Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39833 * 126.46256 * 2 1 4 4 C 1.35447 * 107.86787 * 180.30283 * 3 2 1 5 5 N 1.35538 * 108.87039 * 359.73915 * 4 3 2 6 6 H 0.96995 * 125.67714 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64376 * 0.02562 * 5 4 3 8 8 C 1.46684 * 126.23411 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99911 * 187.33427 * 8 7 5 10 10 N 1.34774 * 119.99647 * 7.33374 * 8 7 5 11 11 C 1.47423 * 125.64938 * 358.17387 * 10 8 7 12 12 C 1.54909 * 104.83187 * 155.83451 * 11 10 8 13 13 C 1.55153 * 101.61869 * 36.98718 * 12 11 10 14 14 H 1.09005 * 110.72024 * 82.87952 * 13 12 11 15 15 N 1.46499 * 110.72187 * 206.15601 * 13 12 11 16 16 C 1.36944 * 119.99864 * 273.54294 * 15 13 12 17 17 H 1.08000 * 119.99614 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00012 * 180.02562 * 16 15 13 19 19 N 1.31610 * 119.99807 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00000 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46904 * 90.00113 * 20 18 16 22 22 H 1.48496 * 109.47083 * 210.00025 * 20 18 16 23 23 H 1.48506 * 109.46781 * 330.00139 * 20 18 16 24 24 C 1.47019 * 125.64399 * 178.12740 * 10 8 7 25 25 H 1.08996 * 109.88687 * 61.52660 * 24 10 8 26 26 C 1.53002 * 109.88522 * 300.51057 * 24 10 8 27 27 H 1.09001 * 109.47033 * 270.13585 * 1 2 3 28 28 H 1.08998 * 109.46650 * 30.13091 * 1 2 3 29 29 H 1.08992 * 109.47306 * 150.13643 * 1 2 3 30 30 H 1.08006 * 126.06687 * 0.06679 * 3 2 1 31 31 H 1.08001 * 125.56558 * 179.70899 * 4 3 2 32 32 H 1.08993 * 110.36766 * 36.99551 * 11 10 8 33 33 H 1.08996 * 110.36527 * 274.66863 * 11 10 8 34 34 H 1.08997 * 111.00688 * 155.08263 * 12 11 10 35 35 H 1.09003 * 111.00315 * 278.89556 * 12 11 10 36 36 H 0.96994 * 120.00275 * 93.54989 * 15 13 12 37 37 H 0.97005 * 119.99974 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.46535 * 61.45926 * 26 24 10 39 39 H 1.08997 * 109.47325 * 181.45531 * 26 24 10 40 40 H 1.08993 * 109.47470 * 301.45838 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3381 1.1246 0.0000 4 6 3.6218 0.6927 -0.0068 5 7 3.6283 -0.6627 -0.0053 6 1 4.4190 -1.2245 -0.0088 7 6 2.3263 -1.1090 0.0021 8 6 1.8897 -2.5093 0.0055 9 8 0.7101 -2.7792 -0.1225 10 7 2.7952 -3.4970 0.1504 11 6 4.2528 -3.3148 0.2759 12 6 4.7485 -4.5821 1.0162 13 6 3.8316 -5.6770 0.4098 14 1 4.2255 -6.0244 -0.5454 15 7 3.6714 -6.7945 1.3434 16 6 4.5863 -7.8134 1.3552 17 1 5.4261 -7.7928 0.6764 18 6 4.4343 -8.8726 2.2395 19 7 5.3138 -9.8515 2.2511 20 14 2.9812 -8.9084 3.4129 21 1 1.8411 -9.6077 2.7678 22 1 3.3649 -9.6278 4.6540 23 1 2.5826 -7.5180 3.7497 24 6 2.4928 -4.9345 0.2103 25 1 2.0239 -5.2539 -0.7204 26 6 1.5594 -5.2213 1.3882 27 1 -0.3633 0.0024 1.0277 28 1 -0.3632 0.8888 -0.5159 29 1 -0.3633 -0.8911 -0.5117 30 1 2.0138 2.1548 0.0010 31 1 4.4973 1.3251 -0.0130 32 1 4.4745 -2.4225 0.8612 33 1 4.7128 -3.2471 -0.7099 34 1 5.7962 -4.7813 0.7912 35 1 4.5921 -4.4929 2.0912 36 1 2.9173 -6.8128 1.9532 37 1 5.2074 -10.5918 2.8688 38 1 0.6215 -4.6840 1.2476 39 1 1.3604 -6.2916 1.4419 40 1 2.0312 -4.8926 2.3141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986217557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = 23.458724 kcal Electronic energy + Delta-G solvation = -21971.393292 eV Core-core repulsion = 18787.084949 eV Total energy + Delta-G solvation = -3184.308344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46354 -40.84190 -38.84870 -36.18264 -33.97517 -33.30480 -32.34680 -31.53497 -30.11187 -27.92639 -26.99897 -25.27311 -24.33139 -22.48137 -21.89452 -20.59071 -20.02502 -19.82091 -18.73949 -17.33831 -17.20585 -16.59355 -16.36403 -15.88276 -15.55051 -15.01920 -14.81250 -14.67958 -14.57360 -14.11161 -13.90573 -13.69641 -13.61201 -13.44657 -13.21359 -13.17115 -13.09109 -12.95307 -12.65462 -12.51526 -12.18543 -12.03836 -11.76813 -11.62529 -11.01505 -10.95407 -9.89993 -9.67075 -9.36096 -9.08457 -8.04692 -5.38438 0.46533 1.35153 1.36821 1.43068 1.75857 1.84488 2.26508 2.32549 2.44817 3.24089 3.39805 3.46580 3.67770 3.81782 4.00464 4.17544 4.21888 4.25161 4.27280 4.31950 4.45556 4.48148 4.53390 4.71296 4.88313 4.89653 4.93271 4.98582 5.08706 5.12546 5.15840 5.23987 5.38609 5.45819 5.75466 5.81695 6.00766 6.19275 6.42715 6.56230 7.03195 7.05938 7.79113 7.97059 9.16297 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.004354 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.804654 B = 6429.448973 C = 6940.121938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.093 4.093 3 C -0.228 4.228 4 C 0.044 3.956 5 N -0.538 5.538 6 H 0.428 0.572 7 C -0.086 4.086 8 C 0.597 3.403 9 O -0.566 6.566 10 N -0.612 5.612 11 C 0.092 3.908 12 C -0.142 4.142 13 C 0.171 3.829 14 H 0.073 0.927 15 N -0.746 5.746 16 C -0.228 4.228 17 H 0.068 0.932 18 C -0.055 4.055 19 N -0.979 5.979 20 Si 0.937 3.063 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.257 1.257 24 C 0.134 3.866 25 H 0.074 0.926 26 C -0.156 4.156 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.162 0.838 31 H 0.215 0.785 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 24.408 -4.717 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.252 4.252 4 C -0.092 4.092 5 N -0.140 5.140 6 H 0.274 0.726 7 C -0.199 4.199 8 C 0.389 3.611 9 O -0.446 6.446 10 N -0.345 5.345 11 C -0.031 4.031 12 C -0.183 4.183 13 C 0.061 3.939 14 H 0.091 0.909 15 N -0.391 5.391 16 C -0.359 4.359 17 H 0.086 0.914 18 C -0.247 4.247 19 N -0.629 5.629 20 Si 0.765 3.235 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.181 1.181 24 C 0.030 3.970 25 H 0.092 0.908 26 C -0.215 4.215 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.180 0.820 31 H 0.231 0.769 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.206 0.794 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.859 24.011 -4.854 24.663 hybrid contribution -0.383 -1.104 0.921 1.488 sum -3.242 22.907 -3.933 23.467 Atomic orbital electron populations 1.20320 0.89691 1.02731 1.01957 1.20273 0.96239 0.91756 1.01961 1.21112 0.92134 0.99033 1.12875 1.22788 1.00572 0.82810 1.03081 1.42822 1.06778 1.08185 1.56261 0.72611 1.19939 0.85507 0.92148 1.22260 1.17092 0.84547 0.83339 0.76141 1.90753 1.17542 1.83535 1.52720 1.48486 1.08089 1.05855 1.72065 1.22749 0.79233 0.99288 1.01820 1.23341 1.01212 0.93729 1.00028 1.21343 0.92103 0.86885 0.93547 0.90892 1.42972 1.29822 1.22890 1.43438 1.19042 1.03399 0.97705 1.15728 0.91391 1.25330 1.00865 0.96810 1.01673 1.69841 1.38826 1.12435 1.41805 0.85695 0.80287 0.78378 0.79161 1.20540 1.22083 1.18146 1.21620 0.96507 0.80129 0.98754 0.90823 1.21974 0.99922 1.01595 0.97969 0.91859 0.90003 0.92434 0.82008 0.76858 0.89006 0.88241 0.88870 0.91726 0.79409 0.93312 0.91812 0.91869 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.09 9.91 71.24 0.71 -1.38 16 2 C -0.09 -2.21 6.21 -19.56 -0.12 -2.33 16 3 C -0.23 -3.84 10.76 22.01 0.24 -3.60 16 4 C 0.04 0.56 11.89 83.48 0.99 1.55 16 5 N -0.54 -8.92 5.39 -183.62 -0.99 -9.91 16 6 H 0.43 5.15 5.19 -92.71 -0.48 4.67 16 7 C -0.09 -2.17 6.85 40.35 0.28 -1.89 16 8 C 0.60 18.43 7.58 86.45 0.66 19.08 16 9 O -0.57 -21.02 13.74 -4.32 -0.06 -21.07 16 10 N -0.61 -17.20 3.08 -792.64 -2.44 -19.64 16 11 C 0.09 1.90 5.47 86.86 0.48 2.38 16 12 C -0.14 -3.97 6.77 31.98 0.22 -3.75 16 13 C 0.17 5.94 3.46 46.20 0.16 6.10 16 14 H 0.07 2.56 8.12 -2.38 -0.02 2.54 16 15 N -0.75 -33.03 4.83 -317.24 -1.53 -34.56 16 16 C -0.23 -12.31 10.46 84.03 0.88 -11.43 16 17 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 18 C -0.05 -3.14 5.50 84.86 0.47 -2.67 16 19 N -0.98 -61.11 13.97 21.65 0.30 -60.80 16 20 Si 0.94 44.82 27.74 68.60 1.90 46.73 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.26 -11.26 6.52 99.48 0.65 -10.61 16 24 C 0.13 4.37 3.47 45.36 0.16 4.52 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 C -0.16 -5.40 7.94 71.98 0.57 -4.83 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.62 6.37 -2.39 -0.02 1.61 16 30 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.09 1.47 5.50 -2.39 -0.01 1.45 16 33 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.37 16.19 2.79 -92.71 -0.26 15.93 16 37 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 38 H 0.06 2.24 6.80 -2.39 -0.02 2.23 16 39 H 0.06 2.26 6.72 -2.39 -0.02 2.24 16 40 H 0.05 1.84 8.06 -2.39 -0.02 1.83 16 Total: -1.00 -72.33 316.61 3.12 -69.21 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.26 Total: 28.30 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.67 Total: 1.76 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -4.66 Total: -124.92 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.73 kcal Total: -72.33 3.12 -69.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986217557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.665 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds