Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39838 * 126.46141 * 2 1 4 4 C 1.35452 * 107.86490 * 180.26547 * 3 2 1 5 5 N 1.35533 * 108.87287 * 359.74009 * 4 3 2 6 6 H 0.96993 * 125.68057 * 180.02562 * 5 4 3 7 7 C 1.37656 * 108.64503 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23626 * 179.97438 * 7 5 4 9 9 O 1.21691 * 120.00250 * 173.56089 * 8 7 5 10 10 N 1.34781 * 119.99846 * 353.56295 * 8 7 5 11 11 C 1.47423 * 125.64537 * 354.34481 * 10 8 7 12 12 C 1.55125 * 104.93984 * 204.04300 * 11 10 8 13 13 C 1.55159 * 101.48573 * 323.21940 * 12 11 10 14 14 H 1.08994 * 110.72306 * 276.83638 * 13 12 11 15 15 N 1.46500 * 110.71645 * 153.73289 * 13 12 11 16 16 C 1.36934 * 119.99593 * 88.84674 * 15 13 12 17 17 H 1.08002 * 120.00283 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99961 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00030 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99876 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47097 * 269.99818 * 20 18 16 22 22 H 1.48503 * 109.47156 * 29.99524 * 20 18 16 23 23 H 1.48506 * 109.47225 * 149.99631 * 20 18 16 24 24 C 1.47013 * 125.64856 * 174.39247 * 10 8 7 25 25 H 1.09004 * 109.88613 * 59.48471 * 24 10 8 26 26 C 1.53003 * 109.88214 * 298.31554 * 24 10 8 27 27 H 1.09005 * 109.46935 * 270.18442 * 1 2 3 28 28 H 1.09000 * 109.46964 * 30.17845 * 1 2 3 29 29 H 1.08993 * 109.47689 * 150.18238 * 1 2 3 30 30 H 1.08003 * 126.06148 * 0.02562 * 3 2 1 31 31 H 1.07993 * 125.56024 * 179.71862 * 4 3 2 32 32 H 1.09001 * 110.37235 * 323.00333 * 11 10 8 33 33 H 1.08994 * 110.36872 * 85.33054 * 11 10 8 34 34 H 1.09004 * 111.16262 * 205.13216 * 12 11 10 35 35 H 1.08994 * 110.93880 * 81.21944 * 12 11 10 36 36 H 0.96996 * 120.00397 * 268.84254 * 15 13 12 37 37 H 0.97001 * 119.99896 * 180.02562 * 19 18 16 38 38 H 1.08990 * 109.47352 * 302.19570 * 26 24 10 39 39 H 1.08999 * 109.46757 * 62.19306 * 26 24 10 40 40 H 1.08998 * 109.46935 * 182.18947 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0060 5 7 3.6284 -0.6626 -0.0039 6 1 4.4190 -1.2245 -0.0068 7 6 2.3262 -1.1090 0.0029 8 6 1.8897 -2.5093 0.0066 9 8 0.7095 -2.7784 0.1309 10 7 2.7959 -3.4980 -0.1275 11 6 4.2327 -3.3150 -0.4023 12 6 4.6861 -4.6440 -1.0615 13 6 3.8432 -5.6824 -0.2750 14 1 4.3263 -5.9363 0.6685 15 7 3.6191 -6.8852 -1.0808 16 6 4.5211 -7.9147 -1.0395 17 1 5.3974 -7.8401 -0.4126 18 6 4.3085 -9.0546 -1.8026 19 7 5.1758 -10.0440 -1.7633 20 14 2.7925 -9.1839 -2.8863 21 1 1.6821 -9.7959 -2.1132 22 1 2.3913 -7.8280 -3.3400 23 1 3.0989 -10.0306 -4.0673 24 6 2.5149 -4.9374 -0.0251 25 1 1.7807 -5.2263 -0.7772 26 6 1.9889 -5.2666 1.3734 27 1 -0.3633 0.0033 1.0277 28 1 -0.3633 0.8884 -0.5166 29 1 -0.3634 -0.8915 -0.5109 30 1 2.0137 2.1548 0.0004 31 1 4.4972 1.3251 -0.0118 32 1 4.3849 -2.4800 -1.0862 33 1 4.7785 -3.1500 0.5266 34 1 5.7526 -4.8133 -0.9126 35 1 4.4342 -4.6587 -2.1218 36 1 2.8319 -6.9524 -1.6434 37 1 5.0274 -10.8404 -2.2969 38 1 2.7208 -4.9568 2.1192 39 1 1.0513 -4.7373 1.5428 40 1 1.8198 -6.3403 1.4545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986217558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = 33.151807 kcal Electronic energy + Delta-G solvation = -21841.216060 eV Core-core repulsion = 18657.328040 eV Total energy + Delta-G solvation = -3183.888020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54667 -39.60779 -37.48017 -34.44504 -32.72429 -31.81165 -31.20063 -30.14643 -29.14393 -26.92035 -25.49030 -23.43638 -22.92097 -21.27713 -20.86779 -19.96767 -19.01019 -17.70603 -17.49937 -16.48587 -15.94457 -15.10872 -14.84231 -14.30314 -14.15173 -13.81936 -13.67964 -13.45363 -13.07169 -12.94765 -12.78636 -12.70506 -12.40979 -12.32657 -12.11425 -11.89169 -11.63893 -11.39752 -11.28435 -10.96011 -10.74178 -10.44923 -10.13038 -9.81467 -9.67770 -9.04585 -8.90820 -8.67919 -8.20559 -7.41219 -5.87527 -3.25362 1.41716 2.60599 2.87895 3.09880 3.32713 3.36334 3.38012 3.41308 4.50586 4.51038 4.69715 4.84215 4.98347 4.99958 5.07532 5.17554 5.23377 5.32499 5.51556 5.56213 5.64544 5.68811 5.74707 5.81385 5.83899 5.91298 6.04592 6.07473 6.25075 6.28580 6.38947 6.43428 6.49513 6.66591 6.70812 6.86575 7.24380 7.57054 7.85654 8.21290 8.30778 9.07115 9.79809 9.97771 11.30053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030937 B = 0.004255 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.855460 B = 6578.347132 C = 6955.673382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.080 4.080 3 C -0.213 4.213 4 C 0.017 3.983 5 N -0.543 5.543 6 H 0.419 0.581 7 C -0.050 4.050 8 C 0.601 3.399 9 O -0.528 6.528 10 N -0.612 5.612 11 C 0.085 3.915 12 C -0.152 4.152 13 C 0.182 3.818 14 H 0.076 0.924 15 N -0.738 5.738 16 C -0.251 4.251 17 H 0.092 0.908 18 C 0.011 3.989 19 N -0.929 5.929 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.277 1.277 23 H -0.290 1.290 24 C 0.126 3.874 25 H 0.077 0.923 26 C -0.155 4.155 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 21.532 4.180 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.237 4.237 4 C -0.119 4.119 5 N -0.144 5.144 6 H 0.261 0.739 7 C -0.163 4.163 8 C 0.391 3.609 9 O -0.405 6.405 10 N -0.346 5.346 11 C -0.038 4.038 12 C -0.193 4.193 13 C 0.070 3.930 14 H 0.094 0.906 15 N -0.379 5.379 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.203 1.203 23 H -0.216 1.216 24 C 0.022 3.978 25 H 0.095 0.905 26 C -0.213 4.213 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.187 0.813 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.867 21.079 4.304 21.704 hybrid contribution -0.343 -0.296 -0.907 1.014 sum -3.210 20.783 3.397 21.301 Atomic orbital electron populations 1.20299 0.89379 1.02606 1.02133 1.19937 0.95846 0.90740 1.02317 1.20777 0.91851 0.98669 1.12414 1.22018 0.99527 0.83283 1.07027 1.42656 1.07650 1.07356 1.56715 0.73904 1.20254 0.83736 0.93457 1.18865 1.16700 0.84921 0.82340 0.76934 1.90796 1.15843 1.82932 1.50908 1.48459 1.08533 1.06809 1.70794 1.22596 0.81655 1.00211 0.99370 1.23576 1.01741 0.92958 1.01039 1.21213 0.90878 0.86176 0.94687 0.90588 1.42695 1.27317 1.16040 1.51892 1.19015 1.02544 0.93323 1.23161 0.88989 1.24657 0.97952 0.96233 0.99732 1.69693 1.36360 1.07287 1.44269 0.86599 0.83839 0.77480 0.80894 1.20822 1.20291 1.21580 1.21943 0.99040 0.78562 0.98231 0.90532 1.22052 1.01327 1.02528 0.95416 0.91572 0.92183 0.90412 0.84131 0.81332 0.91477 0.91469 0.89791 0.90481 0.80289 0.92872 0.92810 0.91939 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.77 36.01 0.35 -0.69 16 2 C -0.08 -1.02 6.21 -104.16 -0.65 -1.67 16 3 C -0.21 -2.17 10.76 -39.98 -0.43 -2.60 16 4 C 0.02 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.54 -5.53 5.37 -9.39 -0.05 -5.58 16 6 H 0.42 3.42 5.35 -40.82 -0.22 3.21 16 7 C -0.05 -0.68 6.82 -81.98 -0.56 -1.24 16 8 C 0.60 9.57 7.56 -12.85 -0.10 9.48 16 9 O -0.53 -9.78 14.16 5.20 0.07 -9.71 16 10 N -0.61 -9.10 3.07 -164.41 -0.50 -9.60 16 11 C 0.09 1.02 5.25 -2.41 -0.01 1.01 16 12 C -0.15 -2.27 6.79 -24.46 -0.17 -2.44 16 13 C 0.18 3.23 3.12 -66.09 -0.21 3.03 16 14 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 15 N -0.74 -16.49 5.04 -51.65 -0.26 -16.75 16 16 C -0.25 -6.70 10.45 -15.06 -0.16 -6.85 16 17 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 18 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 19 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 20 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.13 2.09 3.19 -66.95 -0.21 1.88 16 25 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 26 C -0.16 -2.43 9.10 37.16 0.34 -2.10 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.08 6.64 -51.93 -0.35 0.73 16 30 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 33 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.36 8.21 5.40 -40.82 -0.22 7.99 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.02 7.10 -51.93 -0.37 0.65 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -32.31 321.85 -7.59 -39.90 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.66 Total: 9.52 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.10 Total: -2.03 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.04 Total: -59.43 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.31 -7.59 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986217558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.051 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds