Wall clock time and date at job start Mon Mar 30 2020 01:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39834 * 126.45964 * 2 1 4 4 C 1.35452 * 107.86927 * 180.26298 * 3 2 1 5 5 N 1.35536 * 108.86994 * 359.74134 * 4 3 2 6 6 H 0.96995 * 125.67544 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64177 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23058 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99787 * 187.30843 * 8 7 5 10 10 N 1.34772 * 119.99937 * 7.31319 * 8 7 5 11 11 C 1.47428 * 125.65041 * 358.23840 * 10 8 7 12 12 C 1.54908 * 104.83459 * 155.90682 * 11 10 8 13 13 C 1.55152 * 101.58294 * 37.00259 * 12 11 10 14 14 H 1.09001 * 110.71590 * 83.04461 * 13 12 11 15 15 N 1.46496 * 110.72081 * 206.13488 * 13 12 11 16 16 C 1.36935 * 120.00311 * 271.15924 * 15 13 12 17 17 H 1.07998 * 119.99928 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00216 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47335 * 240.00498 * 20 18 16 23 23 H 1.48503 * 109.46873 * 120.00499 * 20 18 16 24 24 C 1.47323 * 125.61657 * 178.45071 * 10 8 7 25 25 H 1.08997 * 109.85025 * 300.42731 * 24 10 8 26 26 C 1.53001 * 110.05923 * 61.68375 * 24 10 8 27 27 H 1.08997 * 109.47272 * 270.18338 * 1 2 3 28 28 H 1.08994 * 109.46952 * 30.18592 * 1 2 3 29 29 H 1.09000 * 109.46737 * 150.18229 * 1 2 3 30 30 H 1.08009 * 126.06809 * 359.97438 * 3 2 1 31 31 H 1.07997 * 125.56628 * 179.71723 * 4 3 2 32 32 H 1.08999 * 110.36587 * 37.06009 * 11 10 8 33 33 H 1.09006 * 110.45155 * 274.78796 * 11 10 8 34 34 H 1.09004 * 110.99921 * 278.92680 * 12 11 10 35 35 H 1.08999 * 111.00612 * 155.08404 * 12 11 10 36 36 H 0.97008 * 119.99839 * 91.15951 * 15 13 12 37 37 H 0.96998 * 120.00283 * 359.97438 * 19 18 16 38 38 H 1.09004 * 109.47287 * 177.73089 * 26 24 10 39 39 H 1.09004 * 109.47291 * 297.73591 * 26 24 10 40 40 H 1.09003 * 109.47341 * 57.73425 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0038 6 1 4.4191 -1.2243 -0.0067 7 6 2.3263 -1.1089 0.0041 8 6 1.8899 -2.5093 0.0082 9 8 0.7102 -2.7793 -0.1188 10 7 2.7955 -3.4969 0.1527 11 6 4.2531 -3.3145 0.2786 12 6 4.7492 -4.5829 1.0166 13 6 3.8324 -5.6764 0.4075 14 1 4.2282 -6.0237 -0.5469 15 7 3.6723 -6.7962 1.3384 16 6 4.5598 -7.8388 1.3144 17 1 5.3780 -7.8353 0.6095 18 6 4.4084 -8.8996 2.1969 19 7 3.4115 -8.9035 3.0563 20 14 5.6186 -10.3221 2.1637 21 1 6.6397 -10.0790 1.1133 22 1 4.8925 -11.5829 1.8664 23 1 6.2860 -10.4351 3.4855 24 6 2.4925 -4.9376 0.2066 25 1 1.8259 -5.1446 1.0437 26 6 1.8422 -5.3864 -1.1036 27 1 -0.3634 0.0033 1.0276 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8916 -0.5110 30 1 2.0137 2.1549 -0.0004 31 1 4.4972 1.3252 -0.0118 32 1 4.4745 -2.4230 0.8653 33 1 4.7145 -3.2439 -0.7065 34 1 4.5922 -4.4957 2.0918 35 1 5.7970 -4.7814 0.7913 36 1 2.9376 -6.7991 1.9718 37 1 2.7829 -8.1650 3.0733 38 1 1.6590 -6.4604 -1.0691 39 1 0.8969 -4.8607 -1.2388 40 1 2.5073 -5.1579 -1.9364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986217560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:59 Heat of formation + Delta-G solvation = 33.089976 kcal Electronic energy + Delta-G solvation = -21816.787886 eV Core-core repulsion = 18632.897184 eV Total energy + Delta-G solvation = -3183.890701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53925 -39.56110 -37.45090 -34.57613 -32.76986 -31.79190 -31.13485 -29.78458 -28.82454 -26.84362 -25.20147 -23.37972 -23.21734 -21.28514 -21.00458 -19.87047 -19.01218 -17.65412 -17.34730 -16.35438 -15.88464 -15.20976 -14.84342 -14.44398 -13.88728 -13.85561 -13.69306 -13.58745 -13.13405 -12.98772 -12.83357 -12.67650 -12.37191 -12.28243 -12.08364 -11.71169 -11.60245 -11.31351 -11.03793 -10.69716 -10.59195 -10.32435 -10.10851 -9.75830 -9.27946 -9.02109 -8.88572 -8.65897 -8.18154 -7.17236 -6.19989 -3.22484 1.44190 2.62626 2.89051 3.12185 3.40824 3.46487 3.52825 3.61909 4.50007 4.58304 4.71877 4.84466 5.00195 5.06267 5.12005 5.24514 5.26528 5.36433 5.58637 5.60423 5.66884 5.74813 5.83541 5.84702 5.86174 5.93873 6.07238 6.10176 6.28490 6.32064 6.39761 6.47069 6.54194 6.69407 6.74145 6.88959 7.25657 7.59986 7.70919 8.24257 8.65043 9.08850 9.95464 10.08878 11.27844 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.003930 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.730525 B = 7122.101851 C = 7537.920867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.080 4.080 3 C -0.212 4.212 4 C 0.016 3.984 5 N -0.545 5.545 6 H 0.419 0.581 7 C -0.050 4.050 8 C 0.601 3.399 9 O -0.528 6.528 10 N -0.611 5.611 11 C 0.087 3.913 12 C -0.153 4.153 13 C 0.182 3.818 14 H 0.068 0.932 15 N -0.725 5.725 16 C -0.338 4.338 17 H 0.067 0.933 18 C -0.040 4.040 19 N -0.940 5.940 20 Si 1.086 2.914 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.128 3.872 25 H 0.077 0.923 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 18.685 -7.518 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.237 4.237 4 C -0.120 4.120 5 N -0.147 5.147 6 H 0.263 0.737 7 C -0.163 4.163 8 C 0.391 3.609 9 O -0.405 6.405 10 N -0.345 5.345 11 C -0.037 4.037 12 C -0.194 4.194 13 C 0.070 3.930 14 H 0.086 0.914 15 N -0.366 5.366 16 C -0.469 4.469 17 H 0.085 0.915 18 C -0.239 4.239 19 N -0.584 5.584 20 Si 0.917 3.083 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.025 3.975 25 H 0.095 0.905 26 C -0.212 4.212 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.159 0.841 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.203 0.797 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.838 16.913 -7.046 18.414 hybrid contribution 0.104 1.477 -0.448 1.547 sum 1.942 18.390 -7.494 19.953 Atomic orbital electron populations 1.20351 0.89387 1.02950 1.02129 1.19937 0.95862 0.90705 1.02311 1.20780 0.91853 0.98666 1.12386 1.22025 0.99520 0.83362 1.07117 1.42853 1.07704 1.07381 1.56746 0.73719 1.20261 0.83735 0.93484 1.18828 1.16716 0.84981 0.82330 0.76917 1.90781 1.16020 1.82812 1.50900 1.48557 1.06783 1.07045 1.72102 1.22589 0.81249 0.99871 1.00025 1.23564 1.01249 0.93932 1.00678 1.21169 0.90348 0.87344 0.94105 0.91369 1.42359 1.33586 1.20259 1.40433 1.20066 1.07648 0.99818 1.19345 0.91460 1.25810 1.01996 1.00730 0.95317 1.70817 1.15795 1.34153 1.37662 0.83145 0.74385 0.75388 0.75404 1.22064 1.21897 1.21954 1.22000 0.98608 0.78125 0.98779 0.90488 1.22042 1.01030 1.02057 0.96073 0.91716 0.92128 0.89936 0.84139 0.81363 0.91700 0.91376 0.90548 0.90228 0.79692 0.93179 0.91083 0.91678 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.91 36.00 0.36 -0.77 16 2 C -0.08 -1.06 6.21 -104.16 -0.65 -1.71 16 3 C -0.21 -2.27 10.76 -39.98 -0.43 -2.70 16 4 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 5 N -0.54 -5.86 5.39 -9.39 -0.05 -5.91 16 6 H 0.42 3.68 5.19 -40.82 -0.21 3.47 16 7 C -0.05 -0.71 6.85 -81.98 -0.56 -1.27 16 8 C 0.60 9.99 7.62 -12.85 -0.10 9.89 16 9 O -0.53 -10.11 13.80 5.20 0.07 -10.04 16 10 N -0.61 -9.57 3.08 -164.32 -0.51 -10.08 16 11 C 0.09 1.10 5.47 -2.53 -0.01 1.08 16 12 C -0.15 -2.42 6.77 -24.59 -0.17 -2.58 16 13 C 0.18 3.44 3.12 -66.10 -0.21 3.23 16 14 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 15 N -0.72 -17.29 5.23 -51.66 -0.27 -17.56 16 16 C -0.34 -9.05 9.97 -15.06 -0.15 -9.20 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 19 N -0.94 -28.43 13.70 55.49 0.76 -27.67 16 20 Si 1.09 25.23 29.92 -169.99 -5.09 20.15 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.13 2.26 3.23 -66.79 -0.22 2.05 16 25 H 0.08 1.52 7.70 -51.93 -0.40 1.12 16 26 C -0.15 -2.58 9.10 37.16 0.34 -2.24 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 30 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.07 0.70 5.51 -51.93 -0.29 0.41 16 33 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.37 9.28 6.37 -40.82 -0.26 9.02 16 37 H 0.26 7.68 6.77 -40.82 -0.28 7.40 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.13 6.88 -51.93 -0.36 0.77 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -32.41 322.34 -7.85 -40.26 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.54 Total: 11.50 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.09 Total: -5.51 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.07 Total: -61.22 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.41 -7.85 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986217560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.349 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds