Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39834 * 126.45964 * 2 1 4 4 C 1.35452 * 107.86927 * 180.26298 * 3 2 1 5 5 N 1.35536 * 108.86994 * 359.74134 * 4 3 2 6 6 H 0.96995 * 125.67544 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64177 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23058 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99787 * 187.30843 * 8 7 5 10 10 N 1.34772 * 119.99937 * 7.31319 * 8 7 5 11 11 C 1.47428 * 125.65041 * 358.23840 * 10 8 7 12 12 C 1.54908 * 104.83459 * 155.90682 * 11 10 8 13 13 C 1.55152 * 101.58294 * 37.00259 * 12 11 10 14 14 H 1.09001 * 110.71590 * 83.04461 * 13 12 11 15 15 N 1.46496 * 110.72081 * 206.13488 * 13 12 11 16 16 C 1.36935 * 120.00311 * 271.15924 * 15 13 12 17 17 H 1.07998 * 119.99928 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00216 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47335 * 240.00498 * 20 18 16 23 23 H 1.48503 * 109.46873 * 120.00499 * 20 18 16 24 24 C 1.47323 * 125.61657 * 178.45071 * 10 8 7 25 25 H 1.08997 * 109.85025 * 300.42731 * 24 10 8 26 26 C 1.53001 * 110.05923 * 61.68375 * 24 10 8 27 27 H 1.08997 * 109.47272 * 270.18338 * 1 2 3 28 28 H 1.08994 * 109.46952 * 30.18592 * 1 2 3 29 29 H 1.09000 * 109.46737 * 150.18229 * 1 2 3 30 30 H 1.08009 * 126.06809 * 359.97438 * 3 2 1 31 31 H 1.07997 * 125.56628 * 179.71723 * 4 3 2 32 32 H 1.08999 * 110.36587 * 37.06009 * 11 10 8 33 33 H 1.09006 * 110.45155 * 274.78796 * 11 10 8 34 34 H 1.09004 * 110.99921 * 278.92680 * 12 11 10 35 35 H 1.08999 * 111.00612 * 155.08404 * 12 11 10 36 36 H 0.97008 * 119.99839 * 91.15951 * 15 13 12 37 37 H 0.96998 * 120.00283 * 359.97438 * 19 18 16 38 38 H 1.09004 * 109.47287 * 177.73089 * 26 24 10 39 39 H 1.09004 * 109.47291 * 297.73591 * 26 24 10 40 40 H 1.09003 * 109.47341 * 57.73425 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0038 6 1 4.4191 -1.2243 -0.0067 7 6 2.3263 -1.1089 0.0041 8 6 1.8899 -2.5093 0.0082 9 8 0.7102 -2.7793 -0.1188 10 7 2.7955 -3.4969 0.1527 11 6 4.2531 -3.3145 0.2786 12 6 4.7492 -4.5829 1.0166 13 6 3.8324 -5.6764 0.4075 14 1 4.2282 -6.0237 -0.5469 15 7 3.6723 -6.7962 1.3384 16 6 4.5598 -7.8388 1.3144 17 1 5.3780 -7.8353 0.6095 18 6 4.4084 -8.8996 2.1969 19 7 3.4115 -8.9035 3.0563 20 14 5.6186 -10.3221 2.1637 21 1 6.6397 -10.0790 1.1133 22 1 4.8925 -11.5829 1.8664 23 1 6.2860 -10.4351 3.4855 24 6 2.4925 -4.9376 0.2066 25 1 1.8259 -5.1446 1.0437 26 6 1.8422 -5.3864 -1.1036 27 1 -0.3634 0.0033 1.0276 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8916 -0.5110 30 1 2.0137 2.1549 -0.0004 31 1 4.4972 1.3252 -0.0118 32 1 4.4745 -2.4230 0.8653 33 1 4.7145 -3.2439 -0.7065 34 1 4.5922 -4.4957 2.0918 35 1 5.7970 -4.7814 0.7913 36 1 2.9376 -6.7991 1.9718 37 1 2.7829 -8.1650 3.0733 38 1 1.6590 -6.4604 -1.0691 39 1 0.8969 -4.8607 -1.2388 40 1 2.5073 -5.1579 -1.9364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986217560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = 11.785910 kcal Electronic energy + Delta-G solvation = -21817.711699 eV Core-core repulsion = 18632.897184 eV Total energy + Delta-G solvation = -3184.814515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48802 -40.79309 -38.82578 -36.35543 -33.95589 -33.17684 -32.51722 -31.12070 -30.07585 -27.88511 -26.76664 -25.13285 -24.48364 -22.50168 -22.01320 -21.21023 -19.96074 -19.49754 -18.53886 -17.66922 -17.10953 -16.72205 -16.16964 -15.85901 -15.51052 -15.06079 -14.94242 -14.75389 -14.42177 -14.20790 -13.96256 -13.78365 -13.61795 -13.49712 -13.19594 -13.10043 -12.78988 -12.74484 -12.55431 -12.43174 -12.23418 -11.84214 -11.79204 -11.32142 -11.02940 -10.92531 -9.94942 -9.70231 -9.17950 -9.11807 -8.40082 -5.36525 0.42629 1.59664 1.70283 1.71663 1.81411 1.82053 2.22813 2.28115 2.71191 3.31864 3.38862 3.51150 3.69397 3.77376 4.01930 4.11768 4.18037 4.20871 4.23997 4.27149 4.41831 4.42104 4.51841 4.71420 4.85431 4.86450 4.88452 4.96860 5.05181 5.08625 5.13355 5.21485 5.29153 5.43008 5.60174 5.78327 5.97296 6.38877 6.46155 6.53122 6.99753 7.03609 7.91885 8.05652 9.11123 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.003930 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.730525 B = 7122.101851 C = 7537.920867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.092 4.092 3 C -0.227 4.227 4 C 0.046 3.954 5 N -0.538 5.538 6 H 0.428 0.572 7 C -0.088 4.088 8 C 0.594 3.406 9 O -0.568 6.568 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.144 4.144 13 C 0.177 3.823 14 H 0.073 0.927 15 N -0.740 5.740 16 C -0.327 4.327 17 H 0.076 0.924 18 C -0.104 4.104 19 N -0.977 5.977 20 Si 1.133 2.867 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.134 3.866 25 H 0.045 0.955 26 C -0.143 4.143 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.164 0.836 31 H 0.217 0.783 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.357 0.643 37 H 0.243 0.757 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 21.252 -8.826 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.251 4.251 4 C -0.091 4.091 5 N -0.140 5.140 6 H 0.274 0.726 7 C -0.200 4.200 8 C 0.386 3.614 9 O -0.448 6.448 10 N -0.346 5.346 11 C -0.029 4.029 12 C -0.184 4.184 13 C 0.067 3.933 14 H 0.090 0.910 15 N -0.381 5.381 16 C -0.458 4.458 17 H 0.094 0.906 18 C -0.295 4.295 19 N -0.625 5.625 20 Si 0.958 3.042 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.220 1.220 24 C 0.030 3.970 25 H 0.063 0.937 26 C -0.202 4.202 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.182 0.818 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.189 0.811 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.688 19.531 -8.397 21.770 hybrid contribution -0.783 0.850 -0.091 1.159 sum 3.904 20.380 -8.488 22.420 Atomic orbital electron populations 1.20324 0.89736 1.02755 1.01938 1.20283 0.96236 0.91785 1.01861 1.21121 0.92083 0.99020 1.12831 1.22815 1.00617 0.82717 1.02929 1.42808 1.06679 1.08240 1.56310 0.72649 1.19911 0.85625 0.91994 1.22460 1.17170 0.84553 0.83471 0.76161 1.90753 1.17677 1.83592 1.52806 1.48557 1.08172 1.05776 1.72066 1.22739 0.79181 0.99182 1.01790 1.23359 1.01392 0.94104 0.99584 1.21356 0.91657 0.86903 0.93410 0.90954 1.42542 1.32965 1.21388 1.41232 1.20419 1.07367 0.99892 1.18101 0.90600 1.27203 1.03103 1.03704 0.95475 1.70938 1.17332 1.34338 1.39929 0.82552 0.73107 0.72492 0.76072 1.19038 1.22242 1.22024 1.21705 0.97458 0.79864 0.97978 0.93701 1.21927 1.00881 1.01073 0.96275 0.91934 0.89786 0.92573 0.81836 0.76659 0.89067 0.88092 0.92586 0.88529 0.81078 0.94677 0.92204 0.92707 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 9.91 71.24 0.71 -1.53 16 2 C -0.09 -2.32 6.21 -19.56 -0.12 -2.44 16 3 C -0.23 -4.01 10.76 22.01 0.24 -3.78 16 4 C 0.05 0.62 11.89 83.48 0.99 1.61 16 5 N -0.54 -9.54 5.39 -183.62 -0.99 -10.53 16 6 H 0.43 5.61 5.19 -92.71 -0.48 5.13 16 7 C -0.09 -2.36 6.85 40.35 0.28 -2.08 16 8 C 0.59 19.87 7.62 86.45 0.66 20.52 16 9 O -0.57 -22.81 13.80 -4.32 -0.06 -22.87 16 10 N -0.61 -18.88 3.08 -792.00 -2.44 -21.31 16 11 C 0.09 2.12 5.47 86.85 0.47 2.59 16 12 C -0.14 -4.30 6.77 31.98 0.22 -4.09 16 13 C 0.18 6.61 3.12 46.18 0.14 6.76 16 14 H 0.07 2.67 7.81 -2.39 -0.02 2.65 16 15 N -0.74 -36.11 5.23 -317.35 -1.66 -37.77 16 16 C -0.33 -17.51 9.97 84.03 0.84 -16.67 16 17 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.10 -5.88 5.50 84.86 0.47 -5.41 16 19 N -0.98 -60.97 13.70 21.65 0.30 -60.67 16 20 Si 1.13 50.73 29.92 68.60 2.05 52.79 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 C 0.13 4.86 3.23 45.28 0.15 5.01 16 25 H 0.04 1.90 7.70 -2.39 -0.02 1.88 16 26 C -0.14 -4.92 9.10 71.98 0.66 -4.27 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.68 6.37 -2.39 -0.02 1.67 16 30 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.22 0.81 8.06 -2.91 -0.02 0.78 16 32 H 0.09 1.62 5.51 -2.39 -0.01 1.61 16 33 H 0.10 1.71 8.12 -2.38 -0.02 1.69 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 36 H 0.36 18.93 6.37 -92.70 -0.59 18.34 16 37 H 0.24 15.25 6.77 -92.71 -0.63 14.62 16 38 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 1.98 6.88 -2.38 -0.02 1.97 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.94 322.34 3.03 -70.92 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.13 Total: 33.24 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.69 Total: -3.78 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -4.79 Total: -130.29 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.87 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.79 kcal Total: -73.94 3.03 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986217560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.701 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds