Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34489 * 126.82998 * 2 1 4 4 N 1.36452 * 108.85470 * 180.25163 * 3 2 1 5 5 H 0.96996 * 124.85196 * 179.72547 * 4 3 2 6 6 C 1.34660 * 110.29688 * 359.74766 * 4 3 2 7 7 C 1.36770 * 108.39775 * 359.97438 * 6 4 3 8 8 C 1.47262 * 126.94349 * 179.97438 * 7 6 4 9 9 O 1.21620 * 120.00213 * 188.25086 * 8 7 6 10 10 N 1.34782 * 119.99728 * 8.24388 * 8 7 6 11 11 C 1.47523 * 125.63461 * 358.60766 * 10 8 7 12 12 C 1.54905 * 104.78017 * 155.91691 * 11 10 8 13 13 C 1.55153 * 101.62073 * 37.00086 * 12 11 10 14 14 H 1.09007 * 110.71904 * 82.84222 * 13 12 11 15 15 N 1.46496 * 110.72505 * 206.11389 * 13 12 11 16 16 C 1.36933 * 120.00672 * 273.54906 * 15 13 12 17 17 H 1.08010 * 119.99454 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00462 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00222 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47322 * 119.99917 * 20 18 16 23 23 H 1.48506 * 109.47198 * 239.99844 * 20 18 16 24 24 C 1.47020 * 125.64750 * 178.65063 * 10 8 7 25 25 H 1.09004 * 110.00642 * 300.50988 * 24 10 8 26 26 C 1.52994 * 109.88439 * 61.60316 * 24 10 8 27 27 H 1.08998 * 109.47429 * 270.14956 * 1 2 3 28 28 H 1.08998 * 109.47485 * 30.15674 * 1 2 3 29 29 H 1.09002 * 109.46399 * 150.15176 * 1 2 3 30 30 H 1.08000 * 125.57464 * 359.95729 * 3 2 1 31 31 H 1.07997 * 125.80054 * 179.97438 * 6 4 3 32 32 H 1.09000 * 110.41612 * 37.08534 * 11 10 8 33 33 H 1.09000 * 110.37290 * 274.72248 * 11 10 8 34 34 H 1.09001 * 111.00295 * 278.90949 * 12 11 10 35 35 H 1.09001 * 111.00854 * 155.10061 * 12 11 10 36 36 H 0.97003 * 119.99843 * 93.54739 * 15 13 12 37 37 H 0.96995 * 119.99890 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47505 * 177.81309 * 26 24 10 39 39 H 1.09008 * 109.47295 * 297.81109 * 26 24 10 40 40 H 1.09002 * 109.47287 * 57.80836 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0057 5 1 4.3840 1.2415 -0.0107 6 6 3.6657 -0.6901 -0.0038 7 6 2.3865 -1.1740 0.0037 8 6 1.9750 -2.5880 0.0076 9 8 0.8035 -2.8809 -0.1368 10 7 2.8969 -3.5576 0.1711 11 6 4.3485 -3.3459 0.3267 12 6 4.8534 -4.6047 1.0751 13 6 3.9711 -5.7161 0.4478 14 1 4.3915 -6.0534 -0.4997 15 7 3.8142 -6.8389 1.3756 16 6 4.7487 -7.8394 1.4043 17 1 5.6014 -7.8009 0.7424 18 6 4.6003 -8.9029 2.2838 19 7 3.5614 -8.9496 3.0906 20 14 5.8755 -10.2673 2.3233 21 1 6.9379 -9.9809 1.3260 22 1 6.4764 -10.3442 3.6791 23 1 5.2258 -11.5619 1.9957 24 6 2.6223 -5.0010 0.2229 25 1 1.9436 -5.2221 1.0466 26 6 2.0035 -5.4607 -1.0987 27 1 -0.3634 0.0027 1.0276 28 1 -0.3634 0.8885 -0.5162 29 1 -0.3632 -0.8914 -0.5115 30 1 1.9867 2.1059 -0.0007 31 1 4.5665 -1.2859 -0.0077 32 1 4.5410 -2.4505 0.9177 33 1 4.8274 -3.2675 -0.6494 34 1 4.6727 -4.5208 2.1468 35 1 5.9094 -4.7828 0.8719 36 1 3.0482 -6.8737 1.9698 37 1 3.4579 -9.6926 3.7055 38 1 1.8386 -6.5377 -1.0675 39 1 1.0517 -4.9517 -1.2508 40 1 2.6793 -5.2202 -1.9194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987521663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = 33.035374 kcal Electronic energy + Delta-G solvation = -21681.582352 eV Core-core repulsion = 18497.689282 eV Total energy + Delta-G solvation = -3183.893069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29352 -39.43950 -37.10168 -34.11341 -32.45299 -31.91465 -30.92423 -29.83549 -28.59138 -26.60989 -25.23019 -23.57938 -23.13718 -21.22679 -20.37278 -19.51477 -18.73008 -17.58279 -17.18410 -16.24782 -15.74053 -14.83222 -14.74150 -14.29298 -13.91800 -13.70027 -13.54062 -13.25930 -13.15905 -12.79722 -12.67983 -12.59334 -12.34982 -12.08692 -11.75825 -11.50104 -11.30017 -11.03493 -10.98055 -10.81010 -10.55439 -10.20279 -9.96107 -9.74463 -9.39571 -8.92968 -8.69082 -8.35063 -8.22101 -7.00758 -5.79986 -3.10231 1.80710 2.35014 3.06354 3.38005 3.41608 3.47464 3.49568 3.76212 4.56131 4.76250 4.82731 4.97717 5.05528 5.20802 5.36579 5.40602 5.50097 5.51848 5.59633 5.74684 5.78491 5.85772 5.87185 5.99172 6.08508 6.15203 6.18621 6.28363 6.34533 6.52154 6.63090 6.68988 6.73541 6.83787 6.90929 6.97540 7.32730 7.67421 7.95172 8.37385 8.63503 9.48932 10.04258 10.39006 11.42332 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.003868 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.031971 B = 7237.118574 C = 7652.877363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.030 3.970 7 C -0.218 4.218 8 C 0.600 3.400 9 O -0.546 6.546 10 N -0.607 5.607 11 C 0.088 3.912 12 C -0.156 4.156 13 C 0.176 3.824 14 H 0.064 0.936 15 N -0.715 5.715 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.130 3.870 25 H 0.077 0.923 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 20.625 -7.230 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.158 4.158 4 N -0.148 5.148 5 H 0.252 0.748 6 C -0.105 4.105 7 C -0.228 4.228 8 C 0.390 3.610 9 O -0.425 6.425 10 N -0.341 5.341 11 C -0.035 4.035 12 C -0.198 4.198 13 C 0.065 3.935 14 H 0.082 0.918 15 N -0.356 5.356 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.026 3.974 25 H 0.095 0.905 26 C -0.212 4.212 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.084 20.468 -7.338 21.771 hybrid contribution 1.021 -0.451 0.378 1.179 sum 2.105 20.017 -6.960 21.297 Atomic orbital electron populations 1.20203 0.89424 1.02630 1.01894 1.20559 0.95617 0.90359 1.05196 1.21548 0.82611 0.99055 1.12619 1.41550 1.08145 1.06813 1.58272 0.74842 1.22832 0.99483 0.83617 1.04584 1.20406 0.92650 0.92836 1.16913 1.17027 0.84414 0.83292 0.76226 1.90710 1.17369 1.83261 1.51118 1.48390 1.07166 1.06650 1.71873 1.22728 0.81208 0.99806 0.99764 1.23580 1.00832 0.94616 1.00730 1.21240 0.90691 0.87677 0.93933 0.91813 1.42357 1.28572 1.21563 1.43067 1.19246 1.02050 0.99053 1.16962 0.90970 1.24762 0.98109 0.98884 0.98950 1.69678 1.29556 1.32647 1.25839 0.86120 0.80631 0.82181 0.77227 1.20521 1.21869 1.21832 1.21843 0.98553 0.78544 0.98437 0.90539 1.22048 1.01088 1.01825 0.96242 0.91964 0.92554 0.90060 0.81641 0.79788 0.90666 0.91741 0.90592 0.90680 0.77963 0.93439 0.91307 0.91839 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.05 36.01 0.36 -0.66 16 2 C -0.11 -1.42 6.35 -102.54 -0.65 -2.07 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.42 5.90 -12.84 -0.08 -4.49 16 5 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 6 C 0.03 0.32 10.26 -16.84 -0.17 0.14 16 7 C -0.22 -3.11 6.23 -103.35 -0.64 -3.76 16 8 C 0.60 10.45 7.64 -12.59 -0.10 10.36 16 9 O -0.55 -11.11 14.29 5.26 0.08 -11.04 16 10 N -0.61 -9.96 3.07 -164.26 -0.50 -10.47 16 11 C 0.09 1.16 5.29 -2.48 -0.01 1.15 16 12 C -0.16 -2.54 6.76 -24.59 -0.17 -2.71 16 13 C 0.18 3.41 3.12 -66.10 -0.21 3.20 16 14 H 0.06 1.23 7.83 -51.92 -0.41 0.83 16 15 N -0.72 -17.48 5.25 -51.66 -0.27 -17.75 16 16 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.13 2.40 3.22 -66.96 -0.22 2.18 16 25 H 0.08 1.59 7.68 -51.93 -0.40 1.20 16 26 C -0.15 -2.70 9.09 37.15 0.34 -2.36 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.18 6.74 -51.93 -0.35 0.83 16 30 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.19 1.53 4.74 -52.49 -0.25 1.28 16 32 H 0.08 0.83 5.31 -51.93 -0.28 0.55 16 33 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 10.24 7.51 -40.82 -0.31 9.93 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.16 6.86 -51.92 -0.36 0.81 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -33.40 324.48 -7.73 -41.13 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.63 Total: 9.92 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.91 Total: -2.07 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.13 Total: -59.75 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.40 -7.73 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.166 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds