Wall clock time and date at job start Mon Mar 30 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34489 * 126.82998 * 2 1 4 4 N 1.36452 * 108.85470 * 180.25163 * 3 2 1 5 5 H 0.96996 * 124.85196 * 179.72547 * 4 3 2 6 6 C 1.34660 * 110.29688 * 359.74766 * 4 3 2 7 7 C 1.36770 * 108.39775 * 359.97438 * 6 4 3 8 8 C 1.47262 * 126.94349 * 179.97438 * 7 6 4 9 9 O 1.21620 * 120.00213 * 188.25086 * 8 7 6 10 10 N 1.34782 * 119.99728 * 8.24388 * 8 7 6 11 11 C 1.47523 * 125.63461 * 358.60766 * 10 8 7 12 12 C 1.54905 * 104.78017 * 155.91691 * 11 10 8 13 13 C 1.55153 * 101.62073 * 37.00086 * 12 11 10 14 14 H 1.09007 * 110.71904 * 82.84222 * 13 12 11 15 15 N 1.46496 * 110.72505 * 206.11389 * 13 12 11 16 16 C 1.36933 * 120.00672 * 273.54906 * 15 13 12 17 17 H 1.08010 * 119.99454 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00462 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00222 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47322 * 119.99917 * 20 18 16 23 23 H 1.48506 * 109.47198 * 239.99844 * 20 18 16 24 24 C 1.47020 * 125.64750 * 178.65063 * 10 8 7 25 25 H 1.09004 * 110.00642 * 300.50988 * 24 10 8 26 26 C 1.52994 * 109.88439 * 61.60316 * 24 10 8 27 27 H 1.08998 * 109.47429 * 270.14956 * 1 2 3 28 28 H 1.08998 * 109.47485 * 30.15674 * 1 2 3 29 29 H 1.09002 * 109.46399 * 150.15176 * 1 2 3 30 30 H 1.08000 * 125.57464 * 359.95729 * 3 2 1 31 31 H 1.07997 * 125.80054 * 179.97438 * 6 4 3 32 32 H 1.09000 * 110.41612 * 37.08534 * 11 10 8 33 33 H 1.09000 * 110.37290 * 274.72248 * 11 10 8 34 34 H 1.09001 * 111.00295 * 278.90949 * 12 11 10 35 35 H 1.09001 * 111.00854 * 155.10061 * 12 11 10 36 36 H 0.97003 * 119.99843 * 93.54739 * 15 13 12 37 37 H 0.96995 * 119.99890 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47505 * 177.81309 * 26 24 10 39 39 H 1.09008 * 109.47295 * 297.81109 * 26 24 10 40 40 H 1.09002 * 109.47287 * 57.80836 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0057 5 1 4.3840 1.2415 -0.0107 6 6 3.6657 -0.6901 -0.0038 7 6 2.3865 -1.1740 0.0037 8 6 1.9750 -2.5880 0.0076 9 8 0.8035 -2.8809 -0.1368 10 7 2.8969 -3.5576 0.1711 11 6 4.3485 -3.3459 0.3267 12 6 4.8534 -4.6047 1.0751 13 6 3.9711 -5.7161 0.4478 14 1 4.3915 -6.0534 -0.4997 15 7 3.8142 -6.8389 1.3756 16 6 4.7487 -7.8394 1.4043 17 1 5.6014 -7.8009 0.7424 18 6 4.6003 -8.9029 2.2838 19 7 3.5614 -8.9496 3.0906 20 14 5.8755 -10.2673 2.3233 21 1 6.9379 -9.9809 1.3260 22 1 6.4764 -10.3442 3.6791 23 1 5.2258 -11.5619 1.9957 24 6 2.6223 -5.0010 0.2229 25 1 1.9436 -5.2221 1.0466 26 6 2.0035 -5.4607 -1.0987 27 1 -0.3634 0.0027 1.0276 28 1 -0.3634 0.8885 -0.5162 29 1 -0.3632 -0.8914 -0.5115 30 1 1.9867 2.1059 -0.0007 31 1 4.5665 -1.2859 -0.0077 32 1 4.5410 -2.4505 0.9177 33 1 4.8274 -3.2675 -0.6494 34 1 4.6727 -4.5208 2.1468 35 1 5.9094 -4.7828 0.8719 36 1 3.0482 -6.8737 1.9698 37 1 3.4579 -9.6926 3.7055 38 1 1.8386 -6.5377 -1.0675 39 1 1.0517 -4.9517 -1.2508 40 1 2.6793 -5.2202 -1.9194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987521663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:57 Heat of formation + Delta-G solvation = 9.769979 kcal Electronic energy + Delta-G solvation = -21682.591215 eV Core-core repulsion = 18497.689282 eV Total energy + Delta-G solvation = -3184.901932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16983 -40.71791 -38.53227 -35.90729 -33.54796 -33.30658 -32.41139 -31.23316 -29.88457 -27.49436 -26.85964 -24.94628 -24.73904 -22.41520 -21.63617 -20.72868 -19.66543 -19.15255 -18.50075 -17.59062 -17.01837 -16.49677 -16.01599 -15.54172 -15.33621 -15.00531 -14.88010 -14.61161 -14.40147 -14.01595 -13.95713 -13.59622 -13.54349 -13.32263 -13.20581 -13.03220 -12.86421 -12.55382 -12.48700 -12.21591 -12.11596 -12.02258 -11.69069 -11.49696 -10.91786 -10.74179 -9.74749 -9.41237 -9.14587 -9.00647 -7.92218 -5.22419 0.82782 1.50392 1.51416 1.52778 1.61272 2.00517 2.50459 2.57576 2.60925 3.39887 3.62778 3.77975 3.93883 3.97272 4.15056 4.20284 4.28994 4.37772 4.42219 4.47364 4.58899 4.64030 4.69657 4.75561 4.91239 4.93003 4.95301 5.07462 5.15958 5.23528 5.24990 5.35841 5.42341 5.53054 5.57285 5.86796 6.00303 6.28052 6.69885 6.75164 7.33794 7.35543 8.06314 8.30520 9.31790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.003868 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.031971 B = 7237.118574 C = 7652.877363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.154 4.154 3 C -0.005 4.005 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.054 3.946 7 C -0.265 4.265 8 C 0.591 3.409 9 O -0.592 6.592 10 N -0.609 5.609 11 C 0.094 3.906 12 C -0.147 4.147 13 C 0.171 3.829 14 H 0.072 0.928 15 N -0.730 5.730 16 C -0.234 4.234 17 H 0.086 0.914 18 C -0.077 4.077 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.296 1.296 23 H -0.298 1.298 24 C 0.135 3.865 25 H 0.039 0.961 26 C -0.143 4.143 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.204 0.796 31 H 0.211 0.789 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 23.529 -8.515 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 C -0.133 4.133 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.084 4.084 7 C -0.275 4.275 8 C 0.384 3.616 9 O -0.475 6.475 10 N -0.342 5.342 11 C -0.028 4.028 12 C -0.188 4.188 13 C 0.061 3.939 14 H 0.090 0.910 15 N -0.370 5.370 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.269 4.269 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.223 1.223 23 H -0.226 1.226 24 C 0.030 3.970 25 H 0.057 0.943 26 C -0.201 4.201 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.227 0.773 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.277 23.452 -8.668 25.366 hybrid contribution 0.035 -1.220 0.732 1.423 sum 4.312 22.232 -7.935 23.997 Atomic orbital electron populations 1.20111 0.90089 1.02176 1.01357 1.20797 0.95955 0.91300 1.07955 1.21990 0.82375 0.99699 1.09284 1.41590 1.08770 1.06317 1.56084 0.72024 1.23001 0.98625 0.84712 1.02065 1.20333 0.95024 0.91211 1.20957 1.17667 0.83885 0.84759 0.75299 1.90676 1.19344 1.84123 1.53330 1.48426 1.08700 1.05300 1.71764 1.22948 0.78952 0.99235 1.01627 1.23394 1.01192 0.94645 0.99543 1.21433 0.91773 0.87224 0.93427 0.91040 1.42547 1.27754 1.22880 1.43774 1.19679 1.02094 0.98950 1.15832 0.89661 1.25591 1.00261 1.01644 0.99440 1.69852 1.31904 1.33387 1.27242 0.85061 0.78598 0.78805 0.77202 1.18386 1.22330 1.22600 1.21564 0.97490 0.80493 0.97448 0.94273 1.21927 1.00822 1.00837 0.96524 0.92636 0.89849 0.93564 0.77902 0.77303 0.87697 0.88278 0.92772 0.88737 0.79854 0.94174 0.92381 0.93235 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.05 71.24 0.72 -1.25 16 2 C -0.15 -3.72 6.35 -18.51 -0.12 -3.84 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.91 16 4 N -0.53 -5.82 5.90 -194.55 -1.15 -6.96 16 5 H 0.44 1.02 8.96 -92.71 -0.83 0.19 16 6 C 0.05 0.90 10.26 83.92 0.86 1.76 16 7 C -0.26 -7.19 6.23 -19.04 -0.12 -7.31 16 8 C 0.59 20.88 7.64 86.61 0.66 21.54 16 9 O -0.59 -25.66 14.29 -4.09 -0.06 -25.72 16 10 N -0.61 -19.70 3.07 -791.85 -2.43 -22.13 16 11 C 0.09 2.17 5.29 86.83 0.46 2.63 16 12 C -0.15 -4.50 6.76 31.98 0.22 -4.28 16 13 C 0.17 6.55 3.12 46.18 0.14 6.70 16 14 H 0.07 2.65 7.83 -2.38 -0.02 2.63 16 15 N -0.73 -36.46 5.25 -317.34 -1.67 -38.12 16 16 C -0.23 -12.55 9.98 84.03 0.84 -11.71 16 17 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 20 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 C 0.13 5.12 3.22 45.34 0.15 5.26 16 25 H 0.04 1.77 7.68 -2.38 -0.02 1.75 16 26 C -0.14 -5.16 9.09 71.98 0.65 -4.51 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.44 6.74 -2.39 -0.02 1.43 16 30 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.21 2.29 4.74 -2.91 -0.01 2.28 16 32 H 0.11 1.85 5.31 -2.39 -0.01 1.83 16 33 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.37 20.61 7.51 -92.71 -0.70 19.92 16 37 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.91 6.86 -2.38 -0.02 1.90 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.78 324.48 2.46 -75.31 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.45 Total: 27.94 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.91 Total: 1.98 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -4.96 Total: -126.95 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.78 2.46 -75.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.084 kcal (2) G-P(sol) polarization free energy of solvation -77.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds