Wall clock time and date at job start Mon Mar 30 2020 02:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34488 * 126.82946 * 2 1 4 4 N 1.36447 * 108.85372 * 180.25670 * 3 2 1 5 5 H 0.97002 * 124.85532 * 179.73034 * 4 3 2 6 6 C 1.34652 * 110.29860 * 359.74424 * 4 3 2 7 7 C 1.36773 * 108.39993 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94622 * 179.97438 * 7 6 4 9 9 O 1.21623 * 119.99641 * 172.99009 * 8 7 6 10 10 N 1.34775 * 119.99992 * 352.98412 * 8 7 6 11 11 C 1.47423 * 125.64567 * 354.39804 * 10 8 7 12 12 C 1.54919 * 104.82867 * 204.15918 * 11 10 8 13 13 C 1.55157 * 101.58212 * 322.99059 * 12 11 10 14 14 H 1.08992 * 110.86991 * 277.06865 * 13 12 11 15 15 N 1.46496 * 110.71828 * 153.86223 * 13 12 11 16 16 C 1.36935 * 119.99990 * 91.47915 * 15 13 12 17 17 H 1.08009 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00560 * 180.02562 * 16 15 13 19 19 N 1.31629 * 119.99496 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00575 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47035 * 270.00028 * 20 18 16 22 22 H 1.48500 * 109.46959 * 29.99411 * 20 18 16 23 23 H 1.48497 * 109.47274 * 149.99573 * 20 18 16 24 24 C 1.47018 * 125.64822 * 174.43253 * 10 8 7 25 25 H 1.08995 * 109.88728 * 298.32967 * 24 10 8 26 26 C 1.53003 * 109.88043 * 59.49258 * 24 10 8 27 27 H 1.08998 * 109.47192 * 270.14974 * 1 2 3 28 28 H 1.09001 * 109.47313 * 30.15226 * 1 2 3 29 29 H 1.09002 * 109.46660 * 150.14710 * 1 2 3 30 30 H 1.08000 * 125.57698 * 359.96408 * 3 2 1 31 31 H 1.08002 * 125.80468 * 180.02562 * 6 4 3 32 32 H 1.09000 * 110.36787 * 322.99862 * 11 10 8 33 33 H 1.09004 * 110.37203 * 85.32512 * 11 10 8 34 34 H 1.09001 * 111.00240 * 204.91700 * 12 11 10 35 35 H 1.09002 * 110.99815 * 81.06623 * 12 11 10 36 36 H 0.97000 * 120.00057 * 271.47960 * 15 13 12 37 37 H 0.96993 * 119.99614 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47065 * 177.80812 * 26 24 10 39 39 H 1.09002 * 109.46970 * 297.80628 * 26 24 10 40 40 H 1.09000 * 109.47235 * 57.80458 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0058 5 1 4.3840 1.2414 -0.0107 6 6 3.6657 -0.6900 -0.0040 7 6 2.3864 -1.1740 0.0026 8 6 1.9750 -2.5880 0.0061 9 8 0.8020 -2.8796 0.1404 10 7 2.8984 -3.5588 -0.1397 11 6 4.3290 -3.3478 -0.4264 12 6 4.7975 -4.6639 -1.0961 13 6 3.9855 -5.7226 -0.3042 14 1 4.4817 -5.9705 0.6340 15 7 3.7770 -6.9266 -1.1123 16 6 4.6728 -7.9601 -1.0447 17 1 5.5328 -7.8877 -0.3952 18 6 4.4757 -9.1008 -1.8107 19 7 3.4273 -9.1892 -2.6017 20 14 5.6973 -10.5109 -1.7179 21 1 6.7605 -10.3125 -2.7355 22 1 6.3080 -10.5485 -0.3649 23 1 4.9945 -11.7927 -1.9796 24 6 2.6457 -5.0037 -0.0399 25 1 2.2842 -5.2487 0.9588 26 6 1.6135 -5.4250 -1.0878 27 1 -0.3633 0.0027 1.0276 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 1.9868 2.1060 -0.0006 31 1 4.5665 -1.2858 -0.0071 32 1 4.4593 -2.5077 -1.1086 33 1 4.8800 -3.1757 0.4983 34 1 5.8689 -4.8115 -0.9602 35 1 4.5335 -4.6796 -2.1535 36 1 3.0045 -6.9917 -1.6952 37 1 3.2898 -9.9861 -3.1373 38 1 1.4601 -6.5028 -1.0339 39 1 0.6704 -4.9136 -0.8949 40 1 1.9747 -5.1586 -2.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987521668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:01 Heat of formation + Delta-G solvation = 36.886212 kcal Electronic energy + Delta-G solvation = -21777.016377 eV Core-core repulsion = 18593.290292 eV Total energy + Delta-G solvation = -3183.726084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28814 -39.48065 -37.14166 -34.17086 -32.45724 -31.87704 -30.68530 -29.90324 -28.36821 -26.60794 -25.20419 -23.83261 -23.16796 -21.40022 -20.29550 -18.89636 -18.67106 -17.70011 -17.39134 -16.21434 -15.57807 -14.99088 -14.72213 -14.36982 -13.91491 -13.84360 -13.43289 -13.29618 -13.13721 -12.77996 -12.66550 -12.41899 -12.28848 -11.98290 -11.63656 -11.50565 -11.30035 -11.07995 -10.93304 -10.77911 -10.40188 -10.17429 -9.95431 -9.69045 -9.32646 -8.92751 -8.68899 -8.35048 -8.20321 -6.99907 -5.79602 -3.09257 1.80840 2.35020 3.06831 3.39631 3.42242 3.47851 3.49402 3.77105 4.57071 4.77362 4.84895 4.97625 5.08134 5.21340 5.38356 5.39879 5.49228 5.59241 5.63663 5.72184 5.78454 5.87242 5.90530 6.05465 6.13265 6.17591 6.26747 6.31488 6.41290 6.59155 6.67243 6.73525 6.82618 6.84245 6.97935 7.08466 7.32577 7.67620 7.97233 8.38934 8.64937 9.50487 10.06441 10.41511 11.42878 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.003883 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.826836 B = 7209.687622 C = 7738.829742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.033 3.967 7 C -0.218 4.218 8 C 0.599 3.401 9 O -0.544 6.544 10 N -0.608 5.608 11 C 0.091 3.909 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.065 0.935 15 N -0.716 5.716 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.130 3.870 25 H 0.070 0.930 26 C -0.158 4.158 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 21.192 5.141 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C -0.159 4.159 4 N -0.148 5.148 5 H 0.252 0.748 6 C -0.102 4.102 7 C -0.228 4.228 8 C 0.390 3.610 9 O -0.423 6.423 10 N -0.342 5.342 11 C -0.032 4.032 12 C -0.196 4.196 13 C 0.061 3.939 14 H 0.083 0.917 15 N -0.359 5.359 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.218 1.218 24 C 0.026 3.974 25 H 0.088 0.912 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.229 0.771 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.190 21.019 5.251 21.698 hybrid contribution 1.041 -0.483 -0.250 1.175 sum 2.231 20.536 5.002 21.254 Atomic orbital electron populations 1.20163 0.89397 1.02369 1.01888 1.20564 0.95621 0.90386 1.05181 1.21540 0.82590 0.99052 1.12671 1.41534 1.08152 1.06796 1.58285 0.74847 1.22673 0.99386 0.83606 1.04533 1.20427 0.92629 0.92868 1.16896 1.17021 0.84425 0.83277 0.76268 1.90714 1.17088 1.83308 1.51180 1.48392 1.08633 1.06557 1.70633 1.22611 0.81849 0.99649 0.99108 1.23575 1.00962 0.93969 1.01089 1.21185 0.91154 0.87129 0.94413 0.91698 1.42667 1.29771 1.13717 1.49779 1.19258 1.03143 0.94416 1.20758 0.91080 1.24756 0.98098 0.98393 0.99460 1.69666 1.28807 1.29102 1.30267 0.86179 0.80296 0.82073 0.77540 1.21736 1.20729 1.21770 1.21846 0.97701 0.78550 0.99313 0.91241 1.22013 0.98823 1.02463 0.98331 0.91869 0.92596 0.90424 0.81639 0.80099 0.90995 0.91823 0.90688 0.90687 0.77074 0.93385 0.90395 0.91872 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.93 36.01 0.36 -0.62 16 2 C -0.11 -1.42 6.35 -102.54 -0.65 -2.07 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.39 5.90 -12.85 -0.08 -4.46 16 5 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16 6 C 0.03 0.35 10.23 -16.84 -0.17 0.18 16 7 C -0.22 -3.11 6.21 -103.35 -0.64 -3.75 16 8 C 0.60 10.45 7.65 -12.59 -0.10 10.35 16 9 O -0.54 -11.09 14.15 5.26 0.07 -11.02 16 10 N -0.61 -9.99 3.08 -164.33 -0.51 -10.50 16 11 C 0.09 1.20 5.12 -2.52 -0.01 1.19 16 12 C -0.15 -2.52 6.77 -24.58 -0.17 -2.69 16 13 C 0.17 3.37 3.49 -66.10 -0.23 3.14 16 14 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 15 N -0.72 -17.49 4.94 -51.65 -0.25 -17.74 16 16 C -0.24 -6.59 9.96 -15.06 -0.15 -6.74 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 20 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C 0.13 2.41 3.51 -66.95 -0.24 2.17 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 26 C -0.16 -3.14 7.92 37.16 0.29 -2.85 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.13 7.01 -51.93 -0.36 0.77 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.18 1.50 4.82 -52.49 -0.25 1.24 16 32 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 33 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.39 10.17 5.06 -40.82 -0.21 9.96 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 39 H 0.06 1.27 6.61 -51.93 -0.34 0.93 16 40 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -33.43 320.43 -7.75 -41.18 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.52 Total: 10.34 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.00 Total: -2.58 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.11 Total: -59.71 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.43 -7.75 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.064 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds