Wall clock time and date at job start Mon Mar 30 2020 02:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34488 * 126.82946 * 2 1 4 4 N 1.36447 * 108.85372 * 180.25670 * 3 2 1 5 5 H 0.97002 * 124.85532 * 179.73034 * 4 3 2 6 6 C 1.34652 * 110.29860 * 359.74424 * 4 3 2 7 7 C 1.36773 * 108.39993 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94622 * 179.97438 * 7 6 4 9 9 O 1.21623 * 119.99641 * 172.99009 * 8 7 6 10 10 N 1.34775 * 119.99992 * 352.98412 * 8 7 6 11 11 C 1.47423 * 125.64567 * 354.39804 * 10 8 7 12 12 C 1.54919 * 104.82867 * 204.15918 * 11 10 8 13 13 C 1.55157 * 101.58212 * 322.99059 * 12 11 10 14 14 H 1.08992 * 110.86991 * 277.06865 * 13 12 11 15 15 N 1.46496 * 110.71828 * 153.86223 * 13 12 11 16 16 C 1.36935 * 119.99990 * 91.47915 * 15 13 12 17 17 H 1.08009 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00560 * 180.02562 * 16 15 13 19 19 N 1.31629 * 119.99496 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00575 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47035 * 270.00028 * 20 18 16 22 22 H 1.48500 * 109.46959 * 29.99411 * 20 18 16 23 23 H 1.48497 * 109.47274 * 149.99573 * 20 18 16 24 24 C 1.47018 * 125.64822 * 174.43253 * 10 8 7 25 25 H 1.08995 * 109.88728 * 298.32967 * 24 10 8 26 26 C 1.53003 * 109.88043 * 59.49258 * 24 10 8 27 27 H 1.08998 * 109.47192 * 270.14974 * 1 2 3 28 28 H 1.09001 * 109.47313 * 30.15226 * 1 2 3 29 29 H 1.09002 * 109.46660 * 150.14710 * 1 2 3 30 30 H 1.08000 * 125.57698 * 359.96408 * 3 2 1 31 31 H 1.08002 * 125.80468 * 180.02562 * 6 4 3 32 32 H 1.09000 * 110.36787 * 322.99862 * 11 10 8 33 33 H 1.09004 * 110.37203 * 85.32512 * 11 10 8 34 34 H 1.09001 * 111.00240 * 204.91700 * 12 11 10 35 35 H 1.09002 * 110.99815 * 81.06623 * 12 11 10 36 36 H 0.97000 * 120.00057 * 271.47960 * 15 13 12 37 37 H 0.96993 * 119.99614 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47065 * 177.80812 * 26 24 10 39 39 H 1.09002 * 109.46970 * 297.80628 * 26 24 10 40 40 H 1.09000 * 109.47235 * 57.80458 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0058 5 1 4.3840 1.2414 -0.0107 6 6 3.6657 -0.6900 -0.0040 7 6 2.3864 -1.1740 0.0026 8 6 1.9750 -2.5880 0.0061 9 8 0.8020 -2.8796 0.1404 10 7 2.8984 -3.5588 -0.1397 11 6 4.3290 -3.3478 -0.4264 12 6 4.7975 -4.6639 -1.0961 13 6 3.9855 -5.7226 -0.3042 14 1 4.4817 -5.9705 0.6340 15 7 3.7770 -6.9266 -1.1123 16 6 4.6728 -7.9601 -1.0447 17 1 5.5328 -7.8877 -0.3952 18 6 4.4757 -9.1008 -1.8107 19 7 3.4273 -9.1892 -2.6017 20 14 5.6973 -10.5109 -1.7179 21 1 6.7605 -10.3125 -2.7355 22 1 6.3080 -10.5485 -0.3649 23 1 4.9945 -11.7927 -1.9796 24 6 2.6457 -5.0037 -0.0399 25 1 2.2842 -5.2487 0.9588 26 6 1.6135 -5.4250 -1.0878 27 1 -0.3633 0.0027 1.0276 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 1.9868 2.1060 -0.0006 31 1 4.5665 -1.2858 -0.0071 32 1 4.4593 -2.5077 -1.1086 33 1 4.8800 -3.1757 0.4983 34 1 5.8689 -4.8115 -0.9602 35 1 4.5335 -4.6796 -2.1535 36 1 3.0045 -6.9917 -1.6952 37 1 3.2898 -9.9861 -3.1373 38 1 1.4601 -6.5028 -1.0339 39 1 0.6704 -4.9136 -0.8949 40 1 1.9747 -5.1586 -2.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987521668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:00 Heat of formation + Delta-G solvation = 13.922729 kcal Electronic energy + Delta-G solvation = -21778.012148 eV Core-core repulsion = 18593.290292 eV Total energy + Delta-G solvation = -3184.721856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.16064 -40.77559 -38.57872 -35.92259 -33.59317 -33.30272 -32.16217 -31.27080 -29.76065 -27.47970 -26.78854 -25.49494 -24.62703 -22.55308 -21.35847 -20.22336 -19.68252 -19.39672 -18.58575 -17.46792 -17.00137 -16.41137 -16.28006 -15.65864 -15.47924 -14.98596 -14.65491 -14.57771 -14.39593 -14.02969 -13.80195 -13.61035 -13.55543 -13.30264 -13.09759 -12.95474 -12.85880 -12.81534 -12.46792 -12.22911 -12.04532 -12.02995 -11.57644 -11.49642 -10.89531 -10.71768 -9.73519 -9.40702 -9.13791 -8.99036 -7.91610 -5.20906 0.83523 1.50599 1.52281 1.53465 1.60598 2.02824 2.50857 2.57604 2.62398 3.39599 3.66299 3.80353 3.95149 4.00793 4.13545 4.21983 4.30248 4.38184 4.41382 4.48677 4.61844 4.66415 4.70925 4.77088 4.89243 4.92600 4.95815 5.08598 5.16082 5.22567 5.28607 5.35485 5.41243 5.56613 5.57408 5.87283 6.01002 6.29772 6.71350 6.75713 7.35902 7.37322 8.10757 8.34461 9.32296 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.003883 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.826836 B = 7209.687622 C = 7738.829742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.154 4.154 3 C -0.005 4.005 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.057 3.943 7 C -0.265 4.265 8 C 0.591 3.409 9 O -0.591 6.591 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.145 4.145 13 C 0.166 3.834 14 H 0.072 0.928 15 N -0.733 5.733 16 C -0.239 4.239 17 H 0.084 0.916 18 C -0.077 4.077 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.301 1.301 24 C 0.135 3.865 25 H 0.061 0.939 26 C -0.142 4.142 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.204 0.796 31 H 0.208 0.792 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.379 0.621 37 H 0.250 0.750 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 24.228 6.083 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.160 4.160 3 C -0.134 4.134 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.081 4.081 7 C -0.275 4.275 8 C 0.384 3.616 9 O -0.473 6.473 10 N -0.343 5.343 11 C -0.025 4.025 12 C -0.185 4.185 13 C 0.056 3.944 14 H 0.090 0.910 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.214 1.214 22 H -0.191 1.191 23 H -0.228 1.228 24 C 0.030 3.970 25 H 0.079 0.921 26 C -0.201 4.201 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.221 0.779 31 H 0.224 0.776 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.215 0.785 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.286 24.138 6.228 25.294 hybrid contribution 0.090 -1.290 -0.496 1.385 sum 4.376 22.847 5.732 23.958 Atomic orbital electron populations 1.20071 0.90064 1.01789 1.01445 1.20798 0.95948 0.91325 1.07927 1.21981 0.82356 0.99694 1.09347 1.41576 1.08776 1.06306 1.56096 0.72034 1.22857 0.98553 0.84696 1.01966 1.20340 0.94995 0.91218 1.20974 1.17659 0.83882 0.84749 0.75305 1.90680 1.19063 1.84166 1.53386 1.48406 1.10139 1.05121 1.70601 1.22831 0.79817 0.98692 1.01132 1.23383 1.01438 0.94278 0.99439 1.21401 0.92068 0.86383 0.94531 0.90955 1.42855 1.29162 1.15097 1.50344 1.19702 1.03173 0.94667 1.19506 0.89845 1.25577 1.00077 1.01192 1.00041 1.69840 1.31073 1.29533 1.31882 0.85121 0.77988 0.78455 0.78058 1.21393 1.19143 1.22839 1.21594 0.96790 0.80522 0.98086 0.92094 1.21815 0.99071 1.00750 0.98436 0.92344 0.89994 0.94061 0.77915 0.77589 0.88179 0.88173 0.88752 0.92864 0.78510 0.94150 0.92610 0.92761 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.93 71.24 0.71 -1.16 16 2 C -0.15 -3.68 6.35 -18.51 -0.12 -3.80 16 3 C -0.01 -0.08 11.82 83.12 0.98 0.90 16 4 N -0.53 -5.71 5.90 -194.56 -1.15 -6.86 16 5 H 0.44 0.95 8.96 -92.71 -0.83 0.12 16 6 C 0.06 0.95 10.23 83.92 0.86 1.81 16 7 C -0.26 -7.12 6.21 -19.04 -0.12 -7.24 16 8 C 0.59 20.73 7.65 86.62 0.66 21.40 16 9 O -0.59 -25.42 14.15 -4.10 -0.06 -25.48 16 10 N -0.61 -19.58 3.08 -792.06 -2.44 -22.02 16 11 C 0.10 2.24 5.12 86.86 0.44 2.68 16 12 C -0.14 -4.41 6.77 31.99 0.22 -4.20 16 13 C 0.17 6.38 3.49 46.18 0.16 6.54 16 14 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 15 N -0.73 -36.37 4.94 -317.33 -1.57 -37.94 16 16 C -0.24 -12.86 9.96 84.03 0.84 -12.02 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 20 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 24 C 0.13 5.10 3.51 45.34 0.16 5.26 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.14 -6.02 7.92 71.98 0.57 -5.45 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.28 7.01 -2.39 -0.02 1.27 16 30 H 0.20 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.21 2.23 4.82 -2.91 -0.01 2.21 16 32 H 0.10 1.80 5.96 -2.39 -0.01 1.79 16 33 H 0.10 1.67 7.75 -2.38 -0.02 1.65 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.38 20.55 5.06 -92.71 -0.47 20.09 16 37 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.06 2.57 6.76 -2.39 -0.02 2.55 16 39 H 0.05 2.35 6.61 -2.39 -0.02 2.34 16 40 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -77.40 320.43 2.70 -74.70 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.23 Total: 28.72 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.83 Total: 0.83 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -4.87 Total: -126.31 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.40 2.70 -74.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.622 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds