Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34493 * 126.83079 * 2 1 4 4 N 1.36448 * 108.85303 * 180.24535 * 3 2 1 5 5 H 0.96997 * 124.84844 * 179.76915 * 4 3 2 6 6 C 1.34658 * 110.29981 * 359.61329 * 4 3 2 7 7 C 1.36775 * 108.39554 * 0.38269 * 6 4 3 8 8 C 1.47264 * 126.94045 * 179.74988 * 7 6 4 9 9 O 1.21629 * 119.99985 * 171.77200 * 8 7 6 10 10 N 1.34778 * 120.00000 * 351.77082 * 8 7 6 11 11 C 1.47417 * 125.64769 * 1.37359 * 10 8 7 12 12 C 1.54909 * 104.83279 * 204.08924 * 11 10 8 13 13 C 1.55161 * 101.58017 * 322.99375 * 12 11 10 14 14 H 1.09001 * 110.72031 * 276.95525 * 13 12 11 15 15 N 1.46505 * 110.71953 * 153.86615 * 13 12 11 16 16 C 1.36930 * 120.00246 * 86.45382 * 15 13 12 17 17 H 1.07998 * 120.00398 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99936 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47192 * 89.99739 * 20 18 16 22 22 H 1.48498 * 109.46835 * 209.99606 * 20 18 16 23 23 H 1.48499 * 109.47092 * 329.99454 * 20 18 16 24 24 C 1.47023 * 125.64468 * 181.06528 * 10 8 7 25 25 H 1.08994 * 109.88516 * 59.56129 * 24 10 8 26 26 C 1.53002 * 109.88127 * 298.39365 * 24 10 8 27 27 H 1.09001 * 109.46586 * 89.97878 * 1 2 3 28 28 H 1.08998 * 109.47264 * 209.97993 * 1 2 3 29 29 H 1.08997 * 109.47252 * 329.98220 * 1 2 3 30 30 H 1.07997 * 125.57286 * 359.97438 * 3 2 1 31 31 H 1.07999 * 125.80337 * 180.18471 * 6 4 3 32 32 H 1.08994 * 110.37037 * 322.92586 * 11 10 8 33 33 H 1.08998 * 110.36765 * 85.14614 * 11 10 8 34 34 H 1.08998 * 111.00269 * 81.06172 * 12 11 10 35 35 H 1.08999 * 111.00945 * 204.91650 * 12 11 10 36 36 H 0.96998 * 119.99407 * 266.44910 * 15 13 12 37 37 H 0.97006 * 120.00058 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.47263 * 61.45775 * 26 24 10 39 39 H 1.09004 * 109.47072 * 181.45565 * 26 24 10 40 40 H 1.09001 * 109.47150 * 301.45765 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0055 5 1 4.3840 1.2415 -0.0099 6 6 3.6657 -0.6901 -0.0006 7 6 2.3864 -1.1740 -0.0004 8 6 1.9750 -2.5880 -0.0010 9 8 0.8042 -2.8808 0.1501 10 7 2.8959 -3.5577 -0.1689 11 6 4.3456 -3.3466 -0.3331 12 6 4.8472 -4.6057 -1.0834 13 6 3.9686 -5.7165 -0.4497 14 1 4.3962 -6.0550 0.4941 15 7 3.8062 -6.8403 -1.3755 16 6 4.7406 -7.8407 -1.4085 17 1 5.5975 -7.8012 -0.7524 18 6 4.5870 -8.9052 -2.2862 19 7 3.5431 -8.9531 -3.0862 20 14 5.8614 -10.2703 -2.3307 21 1 5.4817 -11.3336 -1.3660 22 1 5.9252 -10.8434 -3.6992 23 1 7.1902 -9.7192 -1.9623 24 6 2.6217 -5.0015 -0.2122 25 1 1.9365 -5.2243 -1.0300 26 6 2.0154 -5.4560 1.1170 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 1.9868 2.1059 -0.0004 31 1 4.5665 -1.2859 -0.0005 32 1 4.5339 -2.4517 -0.9260 33 1 4.8297 -3.2650 0.6401 34 1 4.6601 -4.5229 -2.1540 35 1 5.9043 -4.7832 -0.8856 36 1 3.0368 -6.8756 -1.9650 37 1 3.4355 -9.6972 -3.6992 38 1 1.0711 -4.9373 1.2819 39 1 1.8388 -6.5313 1.0870 40 1 2.7043 -5.2235 1.9290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987521670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = 33.023662 kcal Electronic energy + Delta-G solvation = -21681.321771 eV Core-core repulsion = 18497.428194 eV Total energy + Delta-G solvation = -3183.893577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29455 -39.44248 -37.09919 -34.11393 -32.45313 -31.91409 -30.92422 -29.83420 -28.59254 -26.60974 -25.23104 -23.58250 -23.13500 -21.22902 -20.37213 -19.51285 -18.73014 -17.58199 -17.18346 -16.24948 -15.74057 -14.82983 -14.74303 -14.29305 -13.91652 -13.70022 -13.54448 -13.25639 -13.15524 -12.79658 -12.67849 -12.59514 -12.34930 -12.08466 -11.76081 -11.50138 -11.30065 -11.03071 -10.98345 -10.79335 -10.55900 -10.22378 -9.97120 -9.73815 -9.39646 -8.92390 -8.69043 -8.35010 -8.22068 -7.00706 -5.79709 -3.09960 1.80695 2.35004 3.06388 3.38199 3.42053 3.47458 3.48939 3.76106 4.56249 4.76340 4.82907 4.97765 5.05416 5.20774 5.36667 5.40682 5.50097 5.51758 5.59678 5.74845 5.78465 5.85647 5.87174 5.99147 6.08585 6.15517 6.18682 6.28430 6.34544 6.52189 6.63221 6.68877 6.73554 6.83809 6.90842 6.97713 7.32727 7.67084 7.95293 8.37619 8.63446 9.49123 10.04470 10.39300 11.42537 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.003868 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.963542 B = 7237.258842 C = 7650.788110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.030 3.970 7 C -0.218 4.218 8 C 0.600 3.400 9 O -0.546 6.546 10 N -0.607 5.607 11 C 0.088 3.912 12 C -0.156 4.156 13 C 0.176 3.824 14 H 0.064 0.936 15 N -0.715 5.715 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.130 3.870 25 H 0.077 0.923 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 20.620 7.152 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.158 4.158 4 N -0.148 5.148 5 H 0.252 0.748 6 C -0.105 4.105 7 C -0.228 4.228 8 C 0.390 3.610 9 O -0.425 6.425 10 N -0.341 5.341 11 C -0.035 4.035 12 C -0.197 4.197 13 C 0.064 3.936 14 H 0.082 0.918 15 N -0.355 5.355 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.026 3.974 25 H 0.095 0.905 26 C -0.212 4.212 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.125 20.464 7.246 21.738 hybrid contribution 1.023 -0.454 -0.365 1.177 sum 2.147 20.011 6.880 21.269 Atomic orbital electron populations 1.20204 0.89425 1.02630 1.01899 1.20559 0.95617 0.90359 1.05195 1.21548 0.82612 0.99054 1.12621 1.41548 1.08145 1.06812 1.58267 0.74843 1.22831 0.99484 0.83617 1.04584 1.20405 0.92650 0.92834 1.16916 1.17028 0.84407 0.83292 0.76234 1.90712 1.17409 1.83272 1.51071 1.48367 1.07277 1.06639 1.71779 1.22707 0.81266 0.99814 0.99725 1.23577 1.00840 0.94593 1.00708 1.21243 0.90725 0.87688 0.93909 0.91839 1.42347 1.28240 1.21483 1.43475 1.19198 1.01866 0.99074 1.17257 0.91025 1.24760 0.98080 0.98864 0.98955 1.69666 1.29301 1.32602 1.26161 0.86189 0.80780 0.82303 0.76871 1.21661 1.21786 1.20735 1.21846 0.98611 0.78540 0.98378 0.90544 1.22042 1.01110 1.01852 0.96185 0.91962 0.90057 0.92552 0.81640 0.79790 0.90694 0.91766 0.90584 0.90673 0.77973 0.93385 0.91827 0.91310 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.05 36.01 0.36 -0.66 16 2 C -0.11 -1.42 6.35 -102.54 -0.65 -2.08 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.42 5.90 -12.84 -0.08 -4.50 16 5 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 6 C 0.03 0.32 10.25 -16.84 -0.17 0.14 16 7 C -0.22 -3.11 6.23 -103.35 -0.64 -3.76 16 8 C 0.60 10.46 7.64 -12.59 -0.10 10.36 16 9 O -0.55 -11.12 14.29 5.25 0.08 -11.04 16 10 N -0.61 -9.97 3.06 -164.34 -0.50 -10.47 16 11 C 0.09 1.16 5.29 -2.53 -0.01 1.15 16 12 C -0.16 -2.54 6.77 -24.58 -0.17 -2.71 16 13 C 0.18 3.41 3.12 -66.09 -0.21 3.20 16 14 H 0.06 1.23 7.83 -51.93 -0.41 0.82 16 15 N -0.71 -17.50 5.25 -51.64 -0.27 -17.77 16 16 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.40 3.22 -66.95 -0.22 2.18 16 25 H 0.08 1.59 7.69 -51.93 -0.40 1.20 16 26 C -0.15 -2.70 9.11 37.16 0.34 -2.36 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.18 6.74 -51.93 -0.35 0.83 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.19 1.53 4.74 -52.49 -0.25 1.28 16 32 H 0.08 0.83 5.31 -51.93 -0.28 0.55 16 33 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 10.24 7.51 -40.82 -0.31 9.93 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 1.16 6.84 -51.93 -0.36 0.81 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -33.39 324.48 -7.73 -41.11 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.63 Total: 9.97 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.91 Total: -2.07 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.13 Total: -59.79 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.39 -7.73 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.138 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds