Wall clock time and date at job start Mon Mar 30 2020 02:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34493 * 126.83079 * 2 1 4 4 N 1.36448 * 108.85303 * 180.24535 * 3 2 1 5 5 H 0.96997 * 124.84844 * 179.76915 * 4 3 2 6 6 C 1.34658 * 110.29981 * 359.61329 * 4 3 2 7 7 C 1.36775 * 108.39554 * 0.38269 * 6 4 3 8 8 C 1.47264 * 126.94045 * 179.74988 * 7 6 4 9 9 O 1.21629 * 119.99985 * 171.77200 * 8 7 6 10 10 N 1.34778 * 120.00000 * 351.77082 * 8 7 6 11 11 C 1.47417 * 125.64769 * 1.37359 * 10 8 7 12 12 C 1.54909 * 104.83279 * 204.08924 * 11 10 8 13 13 C 1.55161 * 101.58017 * 322.99375 * 12 11 10 14 14 H 1.09001 * 110.72031 * 276.95525 * 13 12 11 15 15 N 1.46505 * 110.71953 * 153.86615 * 13 12 11 16 16 C 1.36930 * 120.00246 * 86.45382 * 15 13 12 17 17 H 1.07998 * 120.00398 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99936 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47192 * 89.99739 * 20 18 16 22 22 H 1.48498 * 109.46835 * 209.99606 * 20 18 16 23 23 H 1.48499 * 109.47092 * 329.99454 * 20 18 16 24 24 C 1.47023 * 125.64468 * 181.06528 * 10 8 7 25 25 H 1.08994 * 109.88516 * 59.56129 * 24 10 8 26 26 C 1.53002 * 109.88127 * 298.39365 * 24 10 8 27 27 H 1.09001 * 109.46586 * 89.97878 * 1 2 3 28 28 H 1.08998 * 109.47264 * 209.97993 * 1 2 3 29 29 H 1.08997 * 109.47252 * 329.98220 * 1 2 3 30 30 H 1.07997 * 125.57286 * 359.97438 * 3 2 1 31 31 H 1.07999 * 125.80337 * 180.18471 * 6 4 3 32 32 H 1.08994 * 110.37037 * 322.92586 * 11 10 8 33 33 H 1.08998 * 110.36765 * 85.14614 * 11 10 8 34 34 H 1.08998 * 111.00269 * 81.06172 * 12 11 10 35 35 H 1.08999 * 111.00945 * 204.91650 * 12 11 10 36 36 H 0.96998 * 119.99407 * 266.44910 * 15 13 12 37 37 H 0.97006 * 120.00058 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.47263 * 61.45775 * 26 24 10 39 39 H 1.09004 * 109.47072 * 181.45565 * 26 24 10 40 40 H 1.09001 * 109.47150 * 301.45765 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6554 -0.0055 5 1 4.3840 1.2415 -0.0099 6 6 3.6657 -0.6901 -0.0006 7 6 2.3864 -1.1740 -0.0004 8 6 1.9750 -2.5880 -0.0010 9 8 0.8042 -2.8808 0.1501 10 7 2.8959 -3.5577 -0.1689 11 6 4.3456 -3.3466 -0.3331 12 6 4.8472 -4.6057 -1.0834 13 6 3.9686 -5.7165 -0.4497 14 1 4.3962 -6.0550 0.4941 15 7 3.8062 -6.8403 -1.3755 16 6 4.7406 -7.8407 -1.4085 17 1 5.5975 -7.8012 -0.7524 18 6 4.5870 -8.9052 -2.2862 19 7 3.5431 -8.9531 -3.0862 20 14 5.8614 -10.2703 -2.3307 21 1 5.4817 -11.3336 -1.3660 22 1 5.9252 -10.8434 -3.6992 23 1 7.1902 -9.7192 -1.9623 24 6 2.6217 -5.0015 -0.2122 25 1 1.9365 -5.2243 -1.0300 26 6 2.0154 -5.4560 1.1170 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 1.9868 2.1059 -0.0004 31 1 4.5665 -1.2859 -0.0005 32 1 4.5339 -2.4517 -0.9260 33 1 4.8297 -3.2650 0.6401 34 1 4.6601 -4.5229 -2.1540 35 1 5.9043 -4.7832 -0.8856 36 1 3.0368 -6.8756 -1.9650 37 1 3.4355 -9.6972 -3.6992 38 1 1.0711 -4.9373 1.2819 39 1 1.8388 -6.5313 1.0870 40 1 2.7043 -5.2235 1.9290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987521670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:03 Heat of formation + Delta-G solvation = 9.771527 kcal Electronic energy + Delta-G solvation = -21682.330059 eV Core-core repulsion = 18497.428194 eV Total energy + Delta-G solvation = -3184.901865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17174 -40.72102 -38.53033 -35.90862 -33.54855 -33.30709 -32.41226 -31.23253 -29.88606 -27.49464 -26.86013 -24.94730 -24.74133 -22.41810 -21.63526 -20.72829 -19.66581 -19.15184 -18.50109 -17.59101 -17.01923 -16.50051 -16.01389 -15.54542 -15.33139 -15.00698 -14.87706 -14.61327 -14.40055 -14.01330 -13.95953 -13.59628 -13.54284 -13.32211 -13.20852 -13.03794 -12.82795 -12.54964 -12.48836 -12.23593 -12.13937 -12.03377 -11.68801 -11.49883 -10.90558 -10.74282 -9.74748 -9.41299 -9.14587 -9.00613 -7.92009 -5.22234 0.82696 1.50434 1.52372 1.52744 1.60486 2.00636 2.50483 2.57469 2.60996 3.39928 3.62685 3.77888 3.93792 3.97152 4.15030 4.20483 4.29024 4.37464 4.42297 4.47369 4.58878 4.64060 4.69667 4.75537 4.91107 4.92973 4.95262 5.07379 5.15940 5.23424 5.25034 5.35831 5.42190 5.53183 5.57023 5.86748 6.00282 6.28025 6.69939 6.75119 7.33820 7.35457 8.06454 8.30756 9.31794 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.003868 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.963542 B = 7237.258842 C = 7650.788110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.154 4.154 3 C -0.005 4.005 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.054 3.946 7 C -0.265 4.265 8 C 0.591 3.409 9 O -0.592 6.592 10 N -0.609 5.609 11 C 0.094 3.906 12 C -0.147 4.147 13 C 0.171 3.829 14 H 0.071 0.929 15 N -0.730 5.730 16 C -0.236 4.236 17 H 0.085 0.915 18 C -0.077 4.077 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.263 1.263 24 C 0.135 3.865 25 H 0.039 0.961 26 C -0.143 4.143 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.204 0.796 31 H 0.211 0.789 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 23.522 8.392 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 C -0.133 4.133 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.084 4.084 7 C -0.275 4.275 8 C 0.384 3.616 9 O -0.475 6.475 10 N -0.342 5.342 11 C -0.028 4.028 12 C -0.187 4.187 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.370 5.370 16 C -0.367 4.367 17 H 0.103 0.897 18 C -0.269 4.269 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.188 1.188 24 C 0.030 3.970 25 H 0.057 0.943 26 C -0.201 4.201 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.221 0.779 31 H 0.227 0.773 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.333 23.446 8.528 25.322 hybrid contribution 0.033 -1.222 -0.703 1.411 sum 4.366 22.223 7.825 23.961 Atomic orbital electron populations 1.20112 0.90089 1.02183 1.01357 1.20797 0.95955 0.91298 1.07955 1.21991 0.82373 0.99699 1.09283 1.41588 1.08773 1.06315 1.56080 0.72023 1.22999 0.98625 0.84713 1.02068 1.20332 0.95025 0.91207 1.20958 1.17668 0.83875 0.84758 0.75306 1.90679 1.19384 1.84134 1.53284 1.48402 1.08805 1.05290 1.71675 1.22926 0.79034 0.99236 1.01578 1.23390 1.01198 0.94628 0.99515 1.21437 0.91797 0.87235 0.93410 0.91076 1.42537 1.27421 1.22805 1.44189 1.19640 1.01955 0.98987 1.16135 0.89684 1.25593 1.00234 1.01623 0.99434 1.69845 1.31642 1.33321 1.27558 0.85125 0.79166 0.79269 0.76098 1.21722 1.22715 1.18763 1.21568 0.97517 0.80487 0.97421 0.94287 1.21923 1.00888 1.00854 0.96439 0.92628 0.93564 0.89847 0.77899 0.77309 0.87729 0.88298 0.92763 0.88743 0.79869 0.94162 0.93206 0.92389 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.05 71.24 0.72 -1.26 16 2 C -0.15 -3.73 6.35 -18.51 -0.12 -3.84 16 3 C -0.01 -0.07 11.82 83.12 0.98 0.91 16 4 N -0.53 -5.82 5.90 -194.55 -1.15 -6.97 16 5 H 0.44 1.02 8.96 -92.71 -0.83 0.19 16 6 C 0.05 0.90 10.25 83.92 0.86 1.76 16 7 C -0.26 -7.19 6.23 -19.04 -0.12 -7.31 16 8 C 0.59 20.89 7.64 86.62 0.66 21.55 16 9 O -0.59 -25.67 14.29 -4.12 -0.06 -25.73 16 10 N -0.61 -19.71 3.06 -792.08 -2.43 -22.14 16 11 C 0.09 2.18 5.29 86.86 0.46 2.64 16 12 C -0.15 -4.49 6.77 31.99 0.22 -4.28 16 13 C 0.17 6.55 3.12 46.18 0.14 6.70 16 14 H 0.07 2.64 7.83 -2.39 -0.02 2.62 16 15 N -0.73 -36.51 5.25 -317.30 -1.67 -38.17 16 16 C -0.24 -12.65 9.98 84.04 0.84 -11.81 16 17 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 20 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.13 5.12 3.22 45.34 0.15 5.27 16 25 H 0.04 1.76 7.69 -2.39 -0.02 1.74 16 26 C -0.14 -5.16 9.11 71.98 0.66 -4.50 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.44 6.74 -2.39 -0.02 1.43 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.21 2.30 4.74 -2.91 -0.01 2.28 16 32 H 0.11 1.85 5.31 -2.39 -0.01 1.83 16 33 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.37 20.63 7.51 -92.71 -0.70 19.93 16 37 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 38 H 0.05 1.92 6.84 -2.39 -0.02 1.91 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.75 324.48 2.47 -75.29 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.46 Total: 28.13 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.91 Total: 1.93 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -4.96 Total: -127.03 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.75 2.47 -75.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987521670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.057 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds