Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34655 * 125.80611 * 2 1 4 4 H 0.97009 * 124.84912 * 359.97438 * 3 2 1 5 5 C 1.36441 * 110.30291 * 179.97438 * 3 2 1 6 6 C 1.34495 * 108.85683 * 359.97438 * 5 3 2 7 7 C 1.36775 * 125.79923 * 179.97438 * 2 1 3 8 8 C 1.47264 * 126.94203 * 0.03433 * 7 2 1 9 9 O 1.21625 * 119.99733 * 359.97438 * 8 7 2 10 10 N 1.34772 * 119.99846 * 179.97438 * 8 7 2 11 11 C 1.47024 * 125.65051 * 0.02562 * 10 8 7 12 12 C 1.54323 * 107.27244 * 181.02329 * 11 10 8 13 13 H 1.08996 * 110.72041 * 263.65799 * 12 11 10 14 14 N 1.46501 * 110.72043 * 140.55780 * 12 11 10 15 15 C 1.36932 * 119.99729 * 86.45198 * 14 12 11 16 16 H 1.07999 * 120.00130 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99798 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99951 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47125 * 120.00481 * 19 17 15 22 22 H 1.48502 * 109.46756 * 240.00148 * 19 17 15 23 23 C 1.55163 * 102.93951 * 22.19701 * 12 11 10 24 24 C 1.47429 * 125.64629 * 179.72114 * 10 8 7 25 25 H 1.09002 * 110.36474 * 274.74108 * 24 10 8 26 26 C 1.53003 * 110.36604 * 37.06620 * 24 10 8 27 27 H 1.08994 * 109.47002 * 89.97649 * 1 2 3 28 28 H 1.09002 * 109.47565 * 209.98350 * 1 2 3 29 29 H 1.09005 * 109.47097 * 329.98563 * 1 2 3 30 30 H 1.07996 * 125.57564 * 179.97438 * 5 3 2 31 31 H 1.07998 * 126.83460 * 179.74068 * 6 5 3 32 32 H 1.08998 * 109.88266 * 300.44391 * 11 10 8 33 33 H 1.08997 * 109.87944 * 61.61085 * 11 10 8 34 34 H 0.96998 * 120.00077 * 266.46065 * 14 12 11 35 35 H 0.97002 * 119.99674 * 180.02562 * 18 17 15 36 36 H 1.08998 * 111.00266 * 82.57189 * 23 12 11 37 37 H 1.08998 * 110.99877 * 206.38313 * 23 12 11 38 38 H 1.08998 * 109.47020 * 58.55012 * 26 24 10 39 39 H 1.09004 * 109.46812 * 178.54632 * 26 24 10 40 40 H 1.08994 * 109.46877 * 298.54621 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7274 0.0006 6 6 3.6882 -0.6153 0.0015 7 6 2.3071 -1.1093 0.0005 8 6 1.8701 -2.5157 0.0004 9 8 0.6838 -2.7839 0.0003 10 7 2.7848 -3.5055 0.0004 11 6 4.2438 -3.3239 0.0011 12 6 4.8805 -4.7295 -0.0255 13 1 5.1440 -5.0525 0.9816 14 7 6.0567 -4.7493 -0.8986 15 6 7.2829 -4.3939 -0.4036 16 1 7.3830 -4.0993 0.6306 17 6 8.3975 -4.4132 -1.2308 18 7 8.2756 -4.7727 -2.4911 19 14 10.0704 -3.9289 -0.5553 20 1 9.9397 -3.5692 0.8795 21 1 11.0101 -5.0703 -0.6954 22 1 10.5915 -2.7629 -1.3130 23 6 3.7473 -5.6132 -0.6108 24 6 2.4881 -4.9496 0.0062 25 1 2.3326 -5.3008 1.0263 26 6 1.2568 -5.2436 -0.8531 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8901 0.5136 29 1 -0.3633 0.8899 0.5141 30 1 4.4498 1.4058 0.0003 31 1 4.5890 -1.2111 -0.0018 32 1 4.5479 -2.7625 -0.8823 33 1 4.5511 -2.7948 0.9031 34 1 5.9668 -5.0142 -1.8274 35 1 9.0545 -4.7866 -3.0690 36 1 3.7298 -5.5558 -1.6991 37 1 3.8460 -6.6463 -0.2776 38 1 1.4345 -4.9001 -1.8721 39 1 1.0661 -6.3168 -0.8595 40 1 0.3927 -4.7235 -0.4397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988547370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = 28.711112 kcal Electronic energy + Delta-G solvation = -21895.163879 eV Core-core repulsion = 18711.083296 eV Total energy + Delta-G solvation = -3184.080583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15236 -39.38878 -37.02939 -34.09520 -32.19315 -31.50078 -31.29642 -30.12058 -28.33308 -26.38353 -25.22685 -23.94515 -22.82337 -20.90763 -20.46599 -19.83697 -18.06636 -17.43324 -17.10955 -16.11908 -15.55125 -14.95590 -14.77289 -14.29800 -13.69889 -13.54586 -13.52958 -13.34509 -13.06103 -12.78095 -12.58930 -12.55423 -12.52180 -11.90308 -11.77340 -11.56054 -11.43011 -11.15447 -10.94443 -10.61399 -10.56934 -10.24649 -9.96696 -9.72001 -9.22955 -8.93343 -8.69957 -8.25724 -7.92577 -7.05129 -5.82450 -3.12805 1.92169 2.60012 3.15955 3.40158 3.46193 3.48406 3.58576 3.87287 4.54485 4.87776 4.94271 5.11451 5.22703 5.23201 5.35363 5.49454 5.57041 5.57596 5.66222 5.68089 5.79828 5.93060 5.97083 6.00669 6.05831 6.21468 6.23453 6.28707 6.36600 6.54046 6.61174 6.62323 6.84628 6.90867 6.97913 7.10346 7.50354 7.66394 8.08026 8.35219 8.71576 9.47183 10.02320 10.37352 11.39749 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.005327 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.031636 B = 5254.562855 C = 6589.724562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.027 4.027 6 C -0.167 4.167 7 C -0.228 4.228 8 C 0.605 3.395 9 O -0.563 6.563 10 N -0.604 5.604 11 C 0.075 3.925 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.714 5.714 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.136 4.136 24 C 0.138 3.862 25 H 0.070 0.930 26 C -0.162 4.162 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 8.761 5.176 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.153 4.153 6 C -0.191 4.191 7 C -0.238 4.238 8 C 0.396 3.604 9 O -0.445 6.445 10 N -0.336 5.336 11 C -0.051 4.051 12 C 0.056 3.944 13 H 0.082 0.918 14 N -0.354 5.354 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.175 4.175 24 C 0.035 3.965 25 H 0.088 0.912 26 C -0.219 4.219 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.867 8.829 5.265 17.262 hybrid contribution 1.184 0.790 -0.069 1.425 sum -12.683 9.619 5.196 16.745 Atomic orbital electron populations 1.20522 0.87253 1.03845 1.03188 1.20263 0.93500 0.85732 1.02769 1.41577 1.06360 1.08106 1.59099 0.75221 1.21794 0.85398 0.96706 1.11445 1.22835 0.96844 0.93706 1.05678 1.20144 0.93320 0.91992 1.18329 1.16979 0.84324 0.83493 0.75565 1.90611 1.16447 1.84013 1.53475 1.48329 1.07362 1.05624 1.72312 1.23499 0.78099 1.02085 1.01375 1.21241 0.87066 0.90784 0.95264 0.91811 1.42387 1.02457 1.80131 1.10444 1.19303 0.85085 1.37945 0.95327 0.90896 1.24757 0.98017 1.02023 0.95758 1.69676 1.29325 1.53893 1.04838 0.86137 0.84438 0.77722 0.77989 1.20456 1.21845 1.21839 1.23170 0.93767 0.99321 1.01232 1.21863 0.95500 0.80189 0.98960 0.91180 1.22154 0.98885 1.00969 0.99924 0.90749 0.88090 0.92274 0.81476 0.82119 0.90482 0.92155 0.77886 0.93449 0.90541 0.90352 0.92893 0.92625 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.88 36.01 0.36 -0.64 16 2 C 0.10 1.26 7.17 -81.88 -0.59 0.67 16 3 N -0.56 -5.89 5.90 -9.11 -0.05 -5.94 16 4 H 0.41 2.79 8.96 -40.82 -0.37 2.42 16 5 C -0.03 -0.32 11.89 -16.82 -0.20 -0.52 16 6 C -0.17 -2.53 9.39 -37.49 -0.35 -2.88 16 7 C -0.23 -3.69 6.23 -103.35 -0.64 -4.33 16 8 C 0.60 10.79 7.62 -12.59 -0.10 10.69 16 9 O -0.56 -10.55 12.46 5.26 0.07 -10.48 16 10 N -0.60 -10.44 3.24 -164.22 -0.53 -10.98 16 11 C 0.08 1.35 4.74 -3.06 -0.01 1.34 16 12 C 0.17 3.23 3.59 -66.09 -0.24 2.99 16 13 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 14 N -0.71 -17.04 5.18 -51.65 -0.27 -17.31 16 15 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 19 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.14 -2.24 6.12 -24.46 -0.15 -2.39 16 24 C 0.14 2.18 3.78 -66.29 -0.25 1.93 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.16 -2.42 8.71 37.16 0.32 -2.10 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.30 6.46 -51.93 -0.34 0.97 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.16 2.57 4.80 -52.49 -0.25 2.32 16 32 H 0.08 1.52 6.73 -51.93 -0.35 1.17 16 33 H 0.06 1.05 7.01 -51.93 -0.36 0.69 16 34 H 0.39 9.92 7.71 -40.82 -0.31 9.61 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.38 5.88 -51.93 -0.31 1.08 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -31.39 321.95 -7.96 -39.35 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.63 Total: 12.62 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.10 Total: -2.21 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.13 Total: -60.74 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.39 -7.96 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.061 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds