Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34655 * 125.80611 * 2 1 4 4 H 0.97009 * 124.84912 * 359.97438 * 3 2 1 5 5 C 1.36441 * 110.30291 * 179.97438 * 3 2 1 6 6 C 1.34495 * 108.85683 * 359.97438 * 5 3 2 7 7 C 1.36775 * 125.79923 * 179.97438 * 2 1 3 8 8 C 1.47264 * 126.94203 * 0.03433 * 7 2 1 9 9 O 1.21625 * 119.99733 * 359.97438 * 8 7 2 10 10 N 1.34772 * 119.99846 * 179.97438 * 8 7 2 11 11 C 1.47024 * 125.65051 * 0.02562 * 10 8 7 12 12 C 1.54323 * 107.27244 * 181.02329 * 11 10 8 13 13 H 1.08996 * 110.72041 * 263.65799 * 12 11 10 14 14 N 1.46501 * 110.72043 * 140.55780 * 12 11 10 15 15 C 1.36932 * 119.99729 * 86.45198 * 14 12 11 16 16 H 1.07999 * 120.00130 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99798 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99951 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47125 * 120.00481 * 19 17 15 22 22 H 1.48502 * 109.46756 * 240.00148 * 19 17 15 23 23 C 1.55163 * 102.93951 * 22.19701 * 12 11 10 24 24 C 1.47429 * 125.64629 * 179.72114 * 10 8 7 25 25 H 1.09002 * 110.36474 * 274.74108 * 24 10 8 26 26 C 1.53003 * 110.36604 * 37.06620 * 24 10 8 27 27 H 1.08994 * 109.47002 * 89.97649 * 1 2 3 28 28 H 1.09002 * 109.47565 * 209.98350 * 1 2 3 29 29 H 1.09005 * 109.47097 * 329.98563 * 1 2 3 30 30 H 1.07996 * 125.57564 * 179.97438 * 5 3 2 31 31 H 1.07998 * 126.83460 * 179.74068 * 6 5 3 32 32 H 1.08998 * 109.88266 * 300.44391 * 11 10 8 33 33 H 1.08997 * 109.87944 * 61.61085 * 11 10 8 34 34 H 0.96998 * 120.00077 * 266.46065 * 14 12 11 35 35 H 0.97002 * 119.99674 * 180.02562 * 18 17 15 36 36 H 1.08998 * 111.00266 * 82.57189 * 23 12 11 37 37 H 1.08998 * 110.99877 * 206.38313 * 23 12 11 38 38 H 1.08998 * 109.47020 * 58.55012 * 26 24 10 39 39 H 1.09004 * 109.46812 * 178.54632 * 26 24 10 40 40 H 1.08994 * 109.46877 * 298.54621 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7274 0.0006 6 6 3.6882 -0.6153 0.0015 7 6 2.3071 -1.1093 0.0005 8 6 1.8701 -2.5157 0.0004 9 8 0.6838 -2.7839 0.0003 10 7 2.7848 -3.5055 0.0004 11 6 4.2438 -3.3239 0.0011 12 6 4.8805 -4.7295 -0.0255 13 1 5.1440 -5.0525 0.9816 14 7 6.0567 -4.7493 -0.8986 15 6 7.2829 -4.3939 -0.4036 16 1 7.3830 -4.0993 0.6306 17 6 8.3975 -4.4132 -1.2308 18 7 8.2756 -4.7727 -2.4911 19 14 10.0704 -3.9289 -0.5553 20 1 9.9397 -3.5692 0.8795 21 1 11.0101 -5.0703 -0.6954 22 1 10.5915 -2.7629 -1.3130 23 6 3.7473 -5.6132 -0.6108 24 6 2.4881 -4.9496 0.0062 25 1 2.3326 -5.3008 1.0263 26 6 1.2568 -5.2436 -0.8531 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8901 0.5136 29 1 -0.3633 0.8899 0.5141 30 1 4.4498 1.4058 0.0003 31 1 4.5890 -1.2111 -0.0018 32 1 4.5479 -2.7625 -0.8823 33 1 4.5511 -2.7948 0.9031 34 1 5.9668 -5.0142 -1.8274 35 1 9.0545 -4.7866 -3.0690 36 1 3.7298 -5.5558 -1.6991 37 1 3.8460 -6.6463 -0.2776 38 1 1.4345 -4.9001 -1.8721 39 1 1.0661 -6.3168 -0.8595 40 1 0.3927 -4.7235 -0.4397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988547370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = 8.157708 kcal Electronic energy + Delta-G solvation = -21896.055142 eV Core-core repulsion = 18711.083296 eV Total energy + Delta-G solvation = -3184.971846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20869 -40.72084 -38.47608 -35.90425 -33.46119 -33.15457 -32.42457 -31.26140 -30.03595 -27.45892 -26.54301 -25.80107 -24.15647 -22.17147 -21.79931 -21.13331 -19.35701 -19.10791 -18.36260 -17.50280 -16.96008 -16.44050 -16.12638 -15.64090 -15.41309 -15.05092 -14.80241 -14.61491 -14.31094 -14.16554 -13.84783 -13.67796 -13.40070 -13.26951 -13.20176 -12.95253 -12.85311 -12.78325 -12.45767 -12.20866 -12.07438 -11.98402 -11.68956 -11.49511 -10.97320 -10.48255 -9.79376 -9.54801 -9.05989 -9.01778 -7.91633 -5.21610 0.78297 1.51646 1.52386 1.54377 1.62113 2.07723 2.44297 2.57856 2.61463 3.40352 3.58493 3.88062 3.94633 3.94884 4.11812 4.23049 4.32319 4.34124 4.39364 4.52787 4.55549 4.68820 4.75266 4.79023 4.84941 4.91157 4.99242 5.08410 5.15261 5.19387 5.30771 5.34368 5.37027 5.57671 5.64635 5.81033 6.02147 6.29127 6.67375 6.72668 7.36076 7.37599 8.08006 8.32833 9.31787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.005327 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.031636 B = 5254.562855 C = 6589.724562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.103 3.897 3 N -0.535 5.535 4 H 0.434 0.566 5 C -0.007 4.007 6 C -0.203 4.203 7 C -0.271 4.271 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.608 5.608 11 C 0.096 3.904 12 C 0.162 3.838 13 H 0.069 0.931 14 N -0.724 5.724 15 C -0.240 4.240 16 H 0.081 0.919 17 C -0.070 4.070 18 N -0.969 5.969 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.296 1.296 22 H -0.295 1.295 23 C -0.124 4.124 24 C 0.136 3.864 25 H 0.084 0.916 26 C -0.152 4.152 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.202 0.798 31 H 0.143 0.857 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 10.269 6.429 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.134 4.134 6 C -0.226 4.226 7 C -0.281 4.281 8 C 0.389 3.611 9 O -0.462 6.462 10 N -0.341 5.341 11 C -0.030 4.030 12 C 0.052 3.948 13 H 0.087 0.913 14 N -0.363 5.363 15 C -0.371 4.371 16 H 0.099 0.901 17 C -0.263 4.263 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.224 1.224 22 H -0.223 1.223 23 C -0.163 4.163 24 C 0.034 3.966 25 H 0.102 0.898 26 C -0.209 4.209 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.218 0.782 31 H 0.161 0.839 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.598 10.370 6.564 19.071 hybrid contribution 1.295 0.377 -0.425 1.415 sum -13.302 10.747 6.139 18.170 Atomic orbital electron populations 1.20531 0.85629 1.04522 1.03745 1.20544 0.94542 0.85644 1.00989 1.41551 1.05632 1.08758 1.57325 0.72564 1.22202 0.86657 0.96007 1.08557 1.22761 0.96030 0.95265 1.08559 1.20274 0.94545 0.91948 1.21363 1.17355 0.84191 0.84358 0.75185 1.90591 1.16833 1.84456 1.54352 1.48380 1.06829 1.06346 1.72533 1.23079 0.78733 1.00697 1.00508 1.21425 0.86474 0.92066 0.94851 0.91276 1.42514 1.03255 1.80160 1.10415 1.19680 0.85968 1.35958 0.95505 0.90112 1.25513 1.01454 1.03200 0.96101 1.69828 1.29821 1.56150 1.06138 0.85131 0.80157 0.76774 0.78042 1.18782 1.22393 1.22266 1.23081 0.92820 0.99949 1.00432 1.21995 0.95387 0.79432 0.99827 0.89769 1.22050 0.97776 1.02456 0.98643 0.90139 0.90237 0.88731 0.78167 0.83901 0.92674 0.91855 0.79269 0.94088 0.91676 0.88410 0.94278 0.90018 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.88 71.24 0.70 -1.02 16 2 C 0.10 2.55 7.17 41.78 0.30 2.85 16 3 N -0.54 -9.79 5.90 -182.73 -1.08 -10.86 16 4 H 0.43 4.15 8.96 -92.70 -0.83 3.32 16 5 C -0.01 -0.14 11.89 83.12 0.99 0.84 16 6 C -0.20 -6.10 9.39 23.62 0.22 -5.87 16 7 C -0.27 -8.74 6.23 -19.04 -0.12 -8.85 16 8 C 0.60 21.50 7.62 86.62 0.66 22.16 16 9 O -0.58 -21.84 12.46 -4.11 -0.05 -21.89 16 10 N -0.61 -21.22 3.24 -791.73 -2.57 -23.79 16 11 C 0.10 3.51 4.74 86.73 0.41 3.92 16 12 C 0.16 6.20 3.59 46.18 0.17 6.37 16 13 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 14 N -0.72 -35.04 5.18 -317.32 -1.64 -36.68 16 15 C -0.24 -12.66 9.98 84.04 0.84 -11.82 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 18 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 19 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 23 C -0.12 -4.03 6.12 32.07 0.20 -3.83 16 24 C 0.14 4.22 3.78 45.55 0.17 4.39 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.15 -4.44 8.71 71.98 0.63 -3.81 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.98 6.46 -2.39 -0.02 1.97 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.14 4.72 4.80 -2.91 -0.01 4.71 16 32 H 0.05 2.27 6.73 -2.39 -0.02 2.25 16 33 H 0.06 2.26 7.01 -2.39 -0.02 2.24 16 34 H 0.37 19.76 7.71 -92.71 -0.72 19.04 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.06 2.27 7.93 -2.39 -0.02 2.26 16 37 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.07 2.33 5.88 -2.39 -0.01 2.32 16 Total: -1.00 -68.77 321.95 2.13 -66.64 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.47 Total: 35.66 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.63 Total: 1.89 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.00 Total: -129.00 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.77 2.13 -66.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.794 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds