Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34656 * 125.80195 * 2 1 4 4 H 0.96998 * 124.84982 * 359.97438 * 3 2 1 5 5 C 1.36455 * 110.29915 * 180.02562 * 3 2 1 6 6 C 1.34490 * 108.85464 * 359.74475 * 5 3 2 7 7 C 1.36773 * 125.80387 * 180.02562 * 2 1 3 8 8 C 1.47271 * 126.94210 * 359.94094 * 7 2 1 9 9 O 1.21626 * 119.99477 * 0.02562 * 8 7 2 10 10 N 1.34773 * 120.00363 * 179.97438 * 8 7 2 11 11 C 1.47028 * 125.64573 * 0.02942 * 10 8 7 12 12 C 1.54323 * 107.26786 * 178.90251 * 11 10 8 13 13 H 1.08994 * 110.72105 * 96.34796 * 12 11 10 14 14 N 1.46504 * 110.71638 * 219.44526 * 12 11 10 15 15 C 1.36943 * 119.99781 * 273.54735 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47169 * 300.00118 * 19 17 15 23 23 C 1.55150 * 102.94470 * 337.80611 * 12 11 10 24 24 C 1.47424 * 125.65160 * 179.97438 * 10 8 7 25 25 H 1.09000 * 110.36372 * 85.32871 * 24 10 8 26 26 C 1.52999 * 110.36529 * 323.12011 * 24 10 8 27 27 H 1.09008 * 109.47118 * 269.97642 * 1 2 3 28 28 H 1.08995 * 109.47258 * 29.97530 * 1 2 3 29 29 H 1.09000 * 109.47166 * 149.98194 * 1 2 3 30 30 H 1.07997 * 125.57205 * 180.02562 * 5 3 2 31 31 H 1.07997 * 126.83320 * 180.25225 * 6 5 3 32 32 H 1.09000 * 109.88075 * 59.48299 * 11 10 8 33 33 H 1.08994 * 110.01078 * 298.39446 * 11 10 8 34 34 H 0.97000 * 120.00410 * 93.55060 * 14 12 11 35 35 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 36 36 H 1.09000 * 111.00451 * 153.57802 * 23 12 11 37 37 H 1.09002 * 111.00398 * 277.43197 * 23 12 11 38 38 H 1.08997 * 109.47228 * 61.44694 * 26 24 10 39 39 H 1.08994 * 109.47063 * 181.45583 * 26 24 10 40 40 H 1.09004 * 109.46590 * 301.45075 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 0.0047 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0001 9 8 0.6839 -2.7839 0.0007 10 7 2.7850 -3.5055 -0.0010 11 6 4.2440 -3.3238 -0.0023 12 6 4.8806 -4.7294 0.0249 13 1 5.1439 -5.0530 -0.9820 14 7 6.0571 -4.7486 0.8978 15 6 7.2832 -4.3934 0.4022 16 1 7.3830 -4.0995 -0.6323 17 6 8.3989 -4.4172 1.2277 18 7 8.2774 -4.7759 2.4882 19 14 10.0728 -3.9401 0.5496 20 1 10.0249 -2.5420 0.0514 21 1 11.0914 -4.0472 1.6249 22 1 10.4328 -4.8512 -0.5665 23 6 3.7478 -5.6128 0.6110 24 6 2.4884 -4.9496 -0.0001 25 1 2.3289 -5.3047 -1.0182 26 6 1.2587 -5.2400 0.8628 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 4.4497 1.4059 -0.0003 31 1 4.5890 -1.2110 0.0095 32 1 4.5483 -2.7618 0.8807 33 1 4.5531 -2.7942 -0.9033 34 1 5.9675 -5.0130 1.8268 35 1 9.0570 -4.7922 3.0651 36 1 3.8460 -6.6459 0.2779 37 1 3.7305 -5.5547 1.6994 38 1 0.3938 -4.7217 0.4490 39 1 1.0682 -6.3131 0.8742 40 1 1.4384 -4.8921 1.8800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988547372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = 28.822050 kcal Electronic energy + Delta-G solvation = -21895.422844 eV Core-core repulsion = 18711.347071 eV Total energy + Delta-G solvation = -3184.075773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15061 -39.39105 -37.03054 -34.09115 -32.19635 -31.49990 -31.29555 -30.12203 -28.33167 -26.38283 -25.22931 -23.94102 -22.82038 -20.90624 -20.46520 -19.83092 -18.06715 -17.43276 -17.10561 -16.11964 -15.55023 -14.95160 -14.77147 -14.30003 -13.68911 -13.54672 -13.53037 -13.34509 -13.06152 -12.77871 -12.58266 -12.55404 -12.51981 -11.89982 -11.77529 -11.56158 -11.42955 -11.14449 -10.91821 -10.61735 -10.56337 -10.28010 -9.99113 -9.71138 -9.22712 -8.92236 -8.69855 -8.25545 -7.92396 -7.05002 -5.81787 -3.12316 1.92276 2.60159 3.16076 3.41297 3.46109 3.47051 3.58663 3.87374 4.54866 4.87920 4.94736 5.11801 5.22918 5.23320 5.35153 5.49752 5.57280 5.57871 5.66503 5.68227 5.79987 5.93215 5.97171 6.00839 6.06005 6.21518 6.23802 6.28900 6.36850 6.54263 6.61312 6.62601 6.84859 6.91042 6.98028 7.10460 7.50516 7.65686 8.08183 8.35865 8.71674 9.47624 10.02716 10.37785 11.40265 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.005323 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.012334 B = 5259.122568 C = 6592.014783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.027 4.027 6 C -0.167 4.167 7 C -0.228 4.228 8 C 0.605 3.395 9 O -0.563 6.563 10 N -0.603 5.603 11 C 0.075 3.925 12 C 0.169 3.831 13 H 0.064 0.936 14 N -0.714 5.714 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.136 4.136 24 C 0.138 3.862 25 H 0.070 0.930 26 C -0.162 4.162 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 8.758 -5.101 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.153 4.153 6 C -0.191 4.191 7 C -0.238 4.238 8 C 0.396 3.604 9 O -0.445 6.445 10 N -0.336 5.336 11 C -0.051 4.051 12 C 0.057 3.943 13 H 0.082 0.918 14 N -0.354 5.354 15 C -0.378 4.378 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.175 4.175 24 C 0.035 3.965 25 H 0.088 0.912 26 C -0.219 4.219 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.814 8.822 -5.175 17.188 hybrid contribution 1.180 0.790 0.043 1.421 sum -12.634 9.612 -5.132 16.684 Atomic orbital electron populations 1.20521 0.87254 1.03839 1.03192 1.20261 0.93500 0.85732 1.02764 1.41579 1.06360 1.08103 1.59107 0.75224 1.21797 0.85393 0.96707 1.11449 1.22834 0.96846 0.93710 1.05662 1.20143 0.93319 0.91988 1.18335 1.16981 0.84323 0.83492 0.75565 1.90611 1.16448 1.84014 1.53473 1.48324 1.07356 1.05617 1.72307 1.23496 0.78100 1.02087 1.01398 1.21234 0.87063 0.90769 0.95262 0.91817 1.42375 1.02436 1.80171 1.10415 1.19212 0.85072 1.38214 0.95317 0.91013 1.24749 0.97986 1.01972 0.95767 1.69648 1.29521 1.53749 1.04844 0.86280 0.83985 0.78325 0.77638 1.21184 1.21711 1.21192 1.23129 0.93773 0.99339 1.01265 1.21810 0.95499 0.80206 0.98982 0.91223 1.22155 0.98907 1.00980 0.99899 0.90746 0.92275 0.88093 0.81477 0.82116 0.90505 0.92143 0.77880 0.93341 0.90325 0.90567 0.89715 0.92620 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.88 36.00 0.36 -0.64 16 2 C 0.10 1.26 7.17 -81.89 -0.59 0.68 16 3 N -0.56 -5.90 5.90 -9.11 -0.05 -5.96 16 4 H 0.41 2.80 8.96 -40.82 -0.37 2.43 16 5 C -0.03 -0.32 11.89 -16.82 -0.20 -0.52 16 6 C -0.17 -2.53 9.39 -37.50 -0.35 -2.89 16 7 C -0.23 -3.69 6.23 -103.35 -0.64 -4.33 16 8 C 0.60 10.80 7.62 -12.59 -0.10 10.70 16 9 O -0.56 -10.56 12.46 5.25 0.07 -10.49 16 10 N -0.60 -10.45 3.24 -164.37 -0.53 -10.99 16 11 C 0.08 1.35 4.74 -3.06 -0.01 1.34 16 12 C 0.17 3.24 3.59 -66.10 -0.24 3.00 16 13 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 14 N -0.71 -17.05 5.18 -51.65 -0.27 -17.32 16 15 C -0.25 -6.52 9.98 -15.06 -0.15 -6.67 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 19 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 C -0.14 -2.25 6.11 -24.59 -0.15 -2.40 16 24 C 0.14 2.19 3.76 -66.42 -0.25 1.94 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 C -0.16 -2.43 8.71 37.16 0.32 -2.10 16 27 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 1.30 6.47 -51.93 -0.34 0.97 16 30 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.16 2.58 4.79 -52.49 -0.25 2.33 16 32 H 0.08 1.52 6.71 -51.93 -0.35 1.17 16 33 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 34 H 0.39 9.93 7.71 -40.82 -0.31 9.61 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.32 7.92 -51.93 -0.41 0.91 16 38 H 0.08 1.38 5.88 -51.93 -0.31 1.08 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -31.33 321.93 -7.96 -39.29 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.62 Total: 12.75 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.10 Total: -2.22 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.13 Total: -60.78 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.33 -7.96 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.108 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds