Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34656 * 125.80195 * 2 1 4 4 H 0.96998 * 124.84982 * 359.97438 * 3 2 1 5 5 C 1.36455 * 110.29915 * 180.02562 * 3 2 1 6 6 C 1.34490 * 108.85464 * 359.74475 * 5 3 2 7 7 C 1.36773 * 125.80387 * 180.02562 * 2 1 3 8 8 C 1.47271 * 126.94210 * 359.94094 * 7 2 1 9 9 O 1.21626 * 119.99477 * 0.02562 * 8 7 2 10 10 N 1.34773 * 120.00363 * 179.97438 * 8 7 2 11 11 C 1.47028 * 125.64573 * 0.02942 * 10 8 7 12 12 C 1.54323 * 107.26786 * 178.90251 * 11 10 8 13 13 H 1.08994 * 110.72105 * 96.34796 * 12 11 10 14 14 N 1.46504 * 110.71638 * 219.44526 * 12 11 10 15 15 C 1.36943 * 119.99781 * 273.54735 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47169 * 300.00118 * 19 17 15 23 23 C 1.55150 * 102.94470 * 337.80611 * 12 11 10 24 24 C 1.47424 * 125.65160 * 179.97438 * 10 8 7 25 25 H 1.09000 * 110.36372 * 85.32871 * 24 10 8 26 26 C 1.52999 * 110.36529 * 323.12011 * 24 10 8 27 27 H 1.09008 * 109.47118 * 269.97642 * 1 2 3 28 28 H 1.08995 * 109.47258 * 29.97530 * 1 2 3 29 29 H 1.09000 * 109.47166 * 149.98194 * 1 2 3 30 30 H 1.07997 * 125.57205 * 180.02562 * 5 3 2 31 31 H 1.07997 * 126.83320 * 180.25225 * 6 5 3 32 32 H 1.09000 * 109.88075 * 59.48299 * 11 10 8 33 33 H 1.08994 * 110.01078 * 298.39446 * 11 10 8 34 34 H 0.97000 * 120.00410 * 93.55060 * 14 12 11 35 35 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 36 36 H 1.09000 * 111.00451 * 153.57802 * 23 12 11 37 37 H 1.09002 * 111.00398 * 277.43197 * 23 12 11 38 38 H 1.08997 * 109.47228 * 61.44694 * 26 24 10 39 39 H 1.08994 * 109.47063 * 181.45583 * 26 24 10 40 40 H 1.09004 * 109.46590 * 301.45075 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0073 -0.0004 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 0.0047 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0001 9 8 0.6839 -2.7839 0.0007 10 7 2.7850 -3.5055 -0.0010 11 6 4.2440 -3.3238 -0.0023 12 6 4.8806 -4.7294 0.0249 13 1 5.1439 -5.0530 -0.9820 14 7 6.0571 -4.7486 0.8978 15 6 7.2832 -4.3934 0.4022 16 1 7.3830 -4.0995 -0.6323 17 6 8.3989 -4.4172 1.2277 18 7 8.2774 -4.7759 2.4882 19 14 10.0728 -3.9401 0.5496 20 1 10.0249 -2.5420 0.0514 21 1 11.0914 -4.0472 1.6249 22 1 10.4328 -4.8512 -0.5665 23 6 3.7478 -5.6128 0.6110 24 6 2.4884 -4.9496 -0.0001 25 1 2.3289 -5.3047 -1.0182 26 6 1.2587 -5.2400 0.8628 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 4.4497 1.4059 -0.0003 31 1 4.5890 -1.2110 0.0095 32 1 4.5483 -2.7618 0.8807 33 1 4.5531 -2.7942 -0.9033 34 1 5.9675 -5.0130 1.8268 35 1 9.0570 -4.7922 3.0651 36 1 3.8460 -6.6459 0.2779 37 1 3.7305 -5.5547 1.6994 38 1 0.3938 -4.7217 0.4490 39 1 1.0682 -6.3131 0.8742 40 1 1.4384 -4.8921 1.8800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988547372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = 8.325687 kcal Electronic energy + Delta-G solvation = -21896.311633 eV Core-core repulsion = 18711.347071 eV Total energy + Delta-G solvation = -3184.964562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20958 -40.72510 -38.47833 -35.90078 -33.46576 -33.15592 -32.42559 -31.26495 -30.03516 -27.46034 -26.54741 -25.79592 -24.15556 -22.17379 -21.79956 -21.12985 -19.35862 -19.10469 -18.36376 -17.50524 -16.95929 -16.44142 -16.12353 -15.64709 -15.39813 -15.05674 -14.80442 -14.61256 -14.31172 -14.16491 -13.84829 -13.67894 -13.40059 -13.26882 -13.19975 -12.94923 -12.83471 -12.73207 -12.45963 -12.27405 -12.08309 -12.00575 -11.68296 -11.50390 -10.94703 -10.48378 -9.79503 -9.54816 -9.05990 -9.01687 -7.90966 -5.21146 0.78211 1.52289 1.54144 1.54369 1.60323 2.07602 2.44202 2.57908 2.61758 3.40561 3.58920 3.87900 3.94725 3.94856 4.11800 4.22923 4.32279 4.34073 4.39293 4.52920 4.55794 4.68755 4.75209 4.78966 4.84868 4.91111 4.99208 5.08353 5.15220 5.19301 5.30725 5.34286 5.37089 5.57272 5.64501 5.80898 6.02010 6.29349 6.67322 6.72602 7.36225 7.37659 8.08384 8.33296 9.31990 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.005323 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.012334 B = 5259.122568 C = 6592.014783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.103 3.897 3 N -0.535 5.535 4 H 0.434 0.566 5 C -0.007 4.007 6 C -0.203 4.203 7 C -0.271 4.271 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.608 5.608 11 C 0.096 3.904 12 C 0.162 3.838 13 H 0.069 0.931 14 N -0.724 5.724 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.969 5.969 19 Si 0.970 3.030 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.278 1.278 23 C -0.124 4.124 24 C 0.136 3.864 25 H 0.084 0.916 26 C -0.152 4.152 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.201 0.799 31 H 0.143 0.857 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 10.268 -6.331 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.134 4.134 6 C -0.226 4.226 7 C -0.281 4.281 8 C 0.389 3.611 9 O -0.462 6.462 10 N -0.341 5.341 11 C -0.030 4.030 12 C 0.052 3.948 13 H 0.087 0.913 14 N -0.363 5.363 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.262 4.262 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.202 1.202 21 H -0.226 1.226 22 H -0.204 1.204 23 C -0.163 4.163 24 C 0.034 3.966 25 H 0.102 0.898 26 C -0.209 4.209 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.218 0.782 31 H 0.161 0.839 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.526 10.366 -6.451 18.976 hybrid contribution 1.286 0.377 0.390 1.396 sum -13.240 10.743 -6.061 18.095 Atomic orbital electron populations 1.20530 0.85620 1.04523 1.03751 1.20543 0.94544 0.85639 1.00973 1.41552 1.05626 1.08758 1.57332 0.72563 1.22201 0.86656 0.96002 1.08567 1.22758 0.96034 0.95270 1.08552 1.20272 0.94534 0.91948 1.21370 1.17357 0.84190 0.84356 0.75185 1.90591 1.16830 1.84455 1.54347 1.48375 1.06820 1.06339 1.72528 1.23075 0.78739 1.00701 1.00519 1.21416 0.86476 0.92048 0.94848 0.91298 1.42500 1.03235 1.80216 1.10383 1.19606 0.85964 1.36293 0.95540 0.90171 1.25511 1.01450 1.03114 0.96103 1.69809 1.29937 1.56008 1.06133 0.85268 0.79676 0.78387 0.76758 1.20221 1.22582 1.20424 1.23039 0.92823 0.99963 1.00465 1.21941 0.95391 0.79452 0.99850 0.89822 1.22050 0.97793 1.02467 0.98618 0.90130 0.88728 0.90236 0.78179 0.83925 0.92701 0.91861 0.79267 0.94072 0.88385 0.91695 0.90949 0.90013 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.88 71.23 0.70 -1.02 16 2 C 0.10 2.56 7.17 41.78 0.30 2.86 16 3 N -0.54 -9.81 5.90 -182.72 -1.08 -10.89 16 4 H 0.43 4.17 8.96 -92.71 -0.83 3.34 16 5 C -0.01 -0.15 11.89 83.12 0.99 0.84 16 6 C -0.20 -6.12 9.39 23.62 0.22 -5.89 16 7 C -0.27 -8.75 6.23 -19.04 -0.12 -8.87 16 8 C 0.60 21.53 7.62 86.62 0.66 22.19 16 9 O -0.58 -21.85 12.46 -4.11 -0.05 -21.91 16 10 N -0.61 -21.26 3.24 -792.18 -2.57 -23.83 16 11 C 0.10 3.51 4.74 86.73 0.41 3.92 16 12 C 0.16 6.23 3.59 46.18 0.17 6.40 16 13 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 14 N -0.72 -35.10 5.18 -317.33 -1.64 -36.74 16 15 C -0.24 -12.83 9.98 84.03 0.84 -12.00 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 17 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 18 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 19 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.12 -4.04 6.11 31.98 0.20 -3.84 16 24 C 0.14 4.23 3.76 45.46 0.17 4.40 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.15 -4.45 8.71 71.98 0.63 -3.82 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.98 6.47 -2.39 -0.02 1.97 16 30 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.14 4.74 4.79 -2.91 -0.01 4.72 16 32 H 0.05 2.26 6.71 -2.39 -0.02 2.25 16 33 H 0.06 2.26 7.02 -2.39 -0.02 2.24 16 34 H 0.37 19.78 7.71 -92.71 -0.72 19.06 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 38 H 0.07 2.34 5.88 -2.39 -0.01 2.32 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -68.64 321.93 2.13 -66.51 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.47 Total: 36.04 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.63 Total: 1.79 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.01 Total: -129.08 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.64 2.13 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds