Wall clock time and date at job start Mon Mar 30 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34660 * 125.80367 * 2 1 4 4 H 0.96997 * 124.84798 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29782 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85857 * 0.02562 * 5 3 2 7 7 C 1.36769 * 125.79925 * 179.69322 * 2 1 3 8 8 C 1.47267 * 126.94196 * 359.96265 * 7 2 1 9 9 O 1.21623 * 119.99742 * 23.78329 * 8 7 2 10 10 N 1.34777 * 120.00123 * 203.78011 * 8 7 2 11 11 C 1.47425 * 125.64612 * 5.26262 * 10 8 7 12 12 C 1.55128 * 104.72511 * 155.81354 * 11 10 8 13 13 H 1.09000 * 111.19251 * 279.19076 * 12 11 10 14 14 N 1.46491 * 110.94276 * 155.28735 * 12 11 10 15 15 C 1.36931 * 120.00352 * 92.95779 * 14 12 11 16 16 H 1.07999 * 119.99815 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00410 * 180.02562 * 15 14 12 18 18 N 1.31609 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46871 * 90.00350 * 19 17 15 21 21 H 1.48503 * 109.46669 * 209.99985 * 19 17 15 22 22 H 1.48496 * 109.47419 * 329.99925 * 19 17 15 23 23 C 1.55160 * 101.48381 * 37.29396 * 12 11 10 24 24 C 1.47013 * 125.64955 * 185.56407 * 10 8 7 25 25 H 1.08996 * 109.88153 * 61.61227 * 24 10 8 26 26 C 1.53004 * 109.88444 * 300.44343 * 24 10 8 27 27 H 1.09006 * 109.47083 * 90.02150 * 1 2 3 28 28 H 1.08994 * 109.47821 * 210.02481 * 1 2 3 29 29 H 1.09005 * 109.46998 * 330.02834 * 1 2 3 30 30 H 1.08001 * 125.57189 * 180.02562 * 5 3 2 31 31 H 1.07997 * 126.83421 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.36484 * 274.74351 * 11 10 8 33 33 H 1.09006 * 110.36676 * 37.06341 * 11 10 8 34 34 H 0.97001 * 120.00473 * 272.96255 * 14 12 11 35 35 H 0.97008 * 120.00343 * 180.02562 * 18 17 15 36 36 H 1.09001 * 110.72311 * 205.97278 * 23 12 11 37 37 H 1.08996 * 110.71966 * 82.69250 * 23 12 11 38 38 H 1.09000 * 109.47082 * 61.45232 * 26 24 10 39 39 H 1.09004 * 109.47040 * 181.45590 * 26 24 10 40 40 H 1.08995 * 109.46893 * 301.45516 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7274 0.0006 6 6 3.6882 -0.6152 0.0004 7 6 2.3070 -1.1093 0.0059 8 6 1.8701 -2.5156 0.0142 9 8 0.7690 -2.8128 -0.4083 10 7 2.6904 -3.4734 0.4899 11 6 3.9990 -3.2441 1.1291 12 6 4.2283 -4.4948 2.0177 13 1 3.6889 -4.4121 2.9612 14 7 5.6574 -4.7167 2.2507 15 6 6.2596 -4.1908 3.3625 16 1 5.6808 -3.6129 4.0677 17 6 7.6140 -4.4006 3.5831 18 7 8.3194 -5.1044 2.7234 19 14 8.4354 -3.6826 5.0994 20 1 8.3561 -4.6597 6.2148 21 1 9.8598 -3.3892 4.7986 22 1 7.7435 -2.4281 5.4901 23 6 3.6285 -5.6180 1.1309 24 6 2.4313 -4.9200 0.4519 25 1 2.3452 -5.2540 -0.5821 26 6 1.1430 -5.2381 1.2136 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.4498 1.4059 0.0011 31 1 4.5890 -1.2110 0.0011 32 1 4.7810 -3.1638 0.3740 33 1 3.9690 -2.3437 1.7426 34 1 6.1773 -5.2360 1.6175 35 1 9.2658 -5.2513 2.8777 36 1 3.2908 -6.4540 1.7433 37 1 4.3530 -5.9508 0.3877 38 1 0.3042 -4.7316 0.7363 39 1 0.9712 -6.3145 1.2032 40 1 1.2361 -4.8950 2.2440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988547374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:30 Heat of formation + Delta-G solvation = 21.869201 kcal Electronic energy + Delta-G solvation = -21844.069729 eV Core-core repulsion = 18659.692458 eV Total energy + Delta-G solvation = -3184.377271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16933 -39.39424 -37.06365 -34.10249 -32.11473 -31.53998 -31.26132 -30.21403 -28.24127 -26.36698 -25.30543 -23.94437 -22.90622 -20.89116 -20.64847 -19.59022 -18.12775 -17.50574 -17.29980 -15.95517 -15.40895 -15.10379 -14.68495 -14.34449 -13.75496 -13.59439 -13.48830 -13.20129 -12.96059 -12.84886 -12.68932 -12.58036 -12.52812 -12.22787 -11.72568 -11.66724 -11.48981 -11.13428 -10.92641 -10.64215 -10.57491 -10.20482 -9.94387 -9.73123 -9.45744 -8.97839 -8.70173 -8.26128 -7.99332 -7.04513 -5.82538 -3.12630 1.93094 2.56344 3.12509 3.40743 3.46197 3.47721 3.55107 3.77562 4.54608 4.83980 4.92216 5.07899 5.20080 5.25610 5.36500 5.45254 5.53227 5.56691 5.65415 5.68752 5.74964 5.90552 5.96077 5.97755 6.03115 6.17288 6.23187 6.28953 6.35352 6.41148 6.57548 6.66337 6.82037 6.86012 6.94280 7.06711 7.47381 7.66507 8.05524 8.35224 8.67547 9.47184 10.01878 10.37062 11.39608 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.005224 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.210244 B = 5358.636015 C = 6572.873998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.091 3.909 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.024 4.024 6 C -0.159 4.159 7 C -0.225 4.225 8 C 0.604 3.396 9 O -0.562 6.562 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.172 3.828 13 H 0.066 0.934 14 N -0.712 5.712 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.139 4.139 24 C 0.140 3.860 25 H 0.067 0.933 26 C -0.160 4.160 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.168 0.832 31 H 0.151 0.849 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 9.604 -5.729 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 N -0.151 5.151 4 H 0.249 0.751 5 C -0.151 4.151 6 C -0.183 4.183 7 C -0.235 4.235 8 C 0.395 3.605 9 O -0.443 6.443 10 N -0.337 5.337 11 C -0.048 4.048 12 C 0.059 3.941 13 H 0.084 0.916 14 N -0.352 5.352 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.178 4.178 24 C 0.037 3.963 25 H 0.085 0.915 26 C -0.218 4.218 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.460 9.691 -5.797 17.569 hybrid contribution 0.908 0.748 0.596 1.319 sum -12.551 10.439 -5.201 17.134 Atomic orbital electron populations 1.20415 0.87313 1.03330 1.03232 1.20217 0.93454 0.85750 1.03177 1.41530 1.06291 1.08107 1.59205 0.75149 1.21740 0.85457 0.96574 1.11291 1.22372 0.96274 0.93540 1.06129 1.20127 0.93384 0.91946 1.18003 1.17015 0.83175 0.83624 0.76714 1.90682 1.20950 1.83033 1.49618 1.48344 1.20614 1.05873 1.58874 1.23573 0.82765 1.02047 0.96375 1.21362 0.87104 0.90567 0.95024 0.91564 1.42316 1.02938 1.62863 1.27055 1.19262 0.92001 1.26805 0.99567 0.91012 1.24743 0.96525 1.00586 0.98648 1.69657 1.07485 1.44029 1.36633 0.86203 0.78777 0.78665 0.82608 1.21653 1.21753 1.20691 1.23033 0.96255 0.98869 0.99616 1.21459 0.95417 0.80262 0.99190 0.91492 1.22144 0.98020 1.01099 1.00571 0.90480 0.89105 0.92126 0.81442 0.83099 0.91590 0.90939 0.77898 0.93392 0.90309 0.90706 0.91234 0.92273 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.76 36.00 0.35 -0.56 16 2 C 0.09 1.18 7.17 -81.88 -0.59 0.60 16 3 N -0.56 -5.68 5.90 -9.11 -0.05 -5.73 16 4 H 0.41 2.66 8.96 -40.82 -0.37 2.29 16 5 C -0.02 -0.27 11.89 -16.82 -0.20 -0.47 16 6 C -0.16 -2.31 9.20 -37.50 -0.34 -2.66 16 7 C -0.22 -3.55 5.90 -103.35 -0.61 -4.16 16 8 C 0.60 10.71 7.52 -12.59 -0.09 10.61 16 9 O -0.56 -10.75 14.19 5.26 0.07 -10.67 16 10 N -0.60 -10.37 3.08 -164.19 -0.51 -10.88 16 11 C 0.08 1.41 4.93 -2.41 -0.01 1.39 16 12 C 0.17 3.32 3.73 -65.67 -0.24 3.08 16 13 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 14 N -0.71 -17.00 5.24 -51.24 -0.27 -17.26 16 15 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 18 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 19 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.14 -2.28 6.14 -24.89 -0.15 -2.43 16 24 C 0.14 2.23 3.53 -66.95 -0.24 2.00 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.16 -2.35 9.05 37.16 0.34 -2.01 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.14 7.13 -51.93 -0.37 0.77 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.15 2.27 6.15 -52.49 -0.32 1.94 16 32 H 0.07 1.23 7.34 -51.93 -0.38 0.85 16 33 H 0.07 1.33 6.89 -51.93 -0.36 0.98 16 34 H 0.39 9.80 7.76 -40.82 -0.32 9.48 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.08 1.21 7.83 -51.93 -0.41 0.80 16 37 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 38 H 0.07 1.10 6.59 -51.93 -0.34 0.76 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -31.65 326.26 -7.96 -39.61 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.78 Total: 11.39 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.04 Total: -1.63 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.10 Total: -60.31 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.65 -7.96 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.477 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds