Wall clock time and date at job start Mon Mar 30 2020 01:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34660 * 125.80367 * 2 1 4 4 H 0.96997 * 124.84798 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29782 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85857 * 0.02562 * 5 3 2 7 7 C 1.36769 * 125.79925 * 179.69322 * 2 1 3 8 8 C 1.47267 * 126.94196 * 359.96265 * 7 2 1 9 9 O 1.21623 * 119.99742 * 23.78329 * 8 7 2 10 10 N 1.34777 * 120.00123 * 203.78011 * 8 7 2 11 11 C 1.47425 * 125.64612 * 5.26262 * 10 8 7 12 12 C 1.55128 * 104.72511 * 155.81354 * 11 10 8 13 13 H 1.09000 * 111.19251 * 279.19076 * 12 11 10 14 14 N 1.46491 * 110.94276 * 155.28735 * 12 11 10 15 15 C 1.36931 * 120.00352 * 92.95779 * 14 12 11 16 16 H 1.07999 * 119.99815 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00410 * 180.02562 * 15 14 12 18 18 N 1.31609 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46871 * 90.00350 * 19 17 15 21 21 H 1.48503 * 109.46669 * 209.99985 * 19 17 15 22 22 H 1.48496 * 109.47419 * 329.99925 * 19 17 15 23 23 C 1.55160 * 101.48381 * 37.29396 * 12 11 10 24 24 C 1.47013 * 125.64955 * 185.56407 * 10 8 7 25 25 H 1.08996 * 109.88153 * 61.61227 * 24 10 8 26 26 C 1.53004 * 109.88444 * 300.44343 * 24 10 8 27 27 H 1.09006 * 109.47083 * 90.02150 * 1 2 3 28 28 H 1.08994 * 109.47821 * 210.02481 * 1 2 3 29 29 H 1.09005 * 109.46998 * 330.02834 * 1 2 3 30 30 H 1.08001 * 125.57189 * 180.02562 * 5 3 2 31 31 H 1.07997 * 126.83421 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.36484 * 274.74351 * 11 10 8 33 33 H 1.09006 * 110.36676 * 37.06341 * 11 10 8 34 34 H 0.97001 * 120.00473 * 272.96255 * 14 12 11 35 35 H 0.97008 * 120.00343 * 180.02562 * 18 17 15 36 36 H 1.09001 * 110.72311 * 205.97278 * 23 12 11 37 37 H 1.08996 * 110.71966 * 82.69250 * 23 12 11 38 38 H 1.09000 * 109.47082 * 61.45232 * 26 24 10 39 39 H 1.09004 * 109.47040 * 181.45590 * 26 24 10 40 40 H 1.08995 * 109.46893 * 301.45516 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7274 0.0006 6 6 3.6882 -0.6152 0.0004 7 6 2.3070 -1.1093 0.0059 8 6 1.8701 -2.5156 0.0142 9 8 0.7690 -2.8128 -0.4083 10 7 2.6904 -3.4734 0.4899 11 6 3.9990 -3.2441 1.1291 12 6 4.2283 -4.4948 2.0177 13 1 3.6889 -4.4121 2.9612 14 7 5.6574 -4.7167 2.2507 15 6 6.2596 -4.1908 3.3625 16 1 5.6808 -3.6129 4.0677 17 6 7.6140 -4.4006 3.5831 18 7 8.3194 -5.1044 2.7234 19 14 8.4354 -3.6826 5.0994 20 1 8.3561 -4.6597 6.2148 21 1 9.8598 -3.3892 4.7986 22 1 7.7435 -2.4281 5.4901 23 6 3.6285 -5.6180 1.1309 24 6 2.4313 -4.9200 0.4519 25 1 2.3452 -5.2540 -0.5821 26 6 1.1430 -5.2381 1.2136 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.4498 1.4059 0.0011 31 1 4.5890 -1.2110 0.0011 32 1 4.7810 -3.1638 0.3740 33 1 3.9690 -2.3437 1.7426 34 1 6.1773 -5.2360 1.6175 35 1 9.2658 -5.2513 2.8777 36 1 3.2908 -6.4540 1.7433 37 1 4.3530 -5.9508 0.3877 38 1 0.3042 -4.7316 0.7363 39 1 0.9712 -6.3145 1.2032 40 1 1.2361 -4.8950 2.2440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988547374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:29 Heat of formation + Delta-G solvation = 1.276090 kcal Electronic energy + Delta-G solvation = -21844.962713 eV Core-core repulsion = 18659.692458 eV Total energy + Delta-G solvation = -3185.270255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19516 -40.73570 -38.51416 -35.93046 -33.41751 -33.06677 -32.46744 -31.33161 -29.93673 -27.38857 -26.64174 -25.78523 -24.25924 -22.24931 -21.80064 -20.91795 -19.38480 -19.27281 -18.49910 -17.31311 -16.89479 -16.39534 -16.25883 -15.66156 -15.23492 -14.97217 -14.79226 -14.59272 -14.41117 -14.21680 -13.83236 -13.69613 -13.54698 -13.40763 -13.11898 -13.00295 -12.93493 -12.75196 -12.50040 -12.25772 -12.08370 -12.00653 -11.69194 -11.42713 -11.00605 -10.73803 -9.78303 -9.58228 -9.08286 -9.00063 -7.92272 -5.22003 0.81279 1.51648 1.52216 1.54273 1.60647 2.03852 2.42846 2.51207 2.59967 3.39531 3.54973 3.90532 3.93447 4.02279 4.09638 4.16750 4.32008 4.33629 4.39069 4.49969 4.55492 4.67358 4.72595 4.77244 4.85778 4.95658 4.97264 5.06294 5.08196 5.19523 5.23869 5.29337 5.40297 5.53971 5.59309 5.80058 6.01755 6.28637 6.65519 6.71916 7.32490 7.36430 8.07265 8.32860 9.30659 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.005224 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.210244 B = 5358.636015 C = 6572.873998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.098 3.902 3 N -0.535 5.535 4 H 0.434 0.566 5 C -0.003 4.003 6 C -0.194 4.194 7 C -0.269 4.269 8 C 0.597 3.403 9 O -0.582 6.582 10 N -0.607 5.607 11 C 0.099 3.901 12 C 0.166 3.834 13 H 0.062 0.938 14 N -0.721 5.721 15 C -0.243 4.243 16 H 0.076 0.924 17 C -0.067 4.067 18 N -0.966 5.966 19 Si 0.969 3.031 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.126 4.126 24 C 0.138 3.862 25 H 0.070 0.930 26 C -0.151 4.151 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.203 0.797 31 H 0.136 0.864 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 11.426 -5.349 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 N -0.133 5.133 4 H 0.275 0.725 5 C -0.130 4.130 6 C -0.218 4.218 7 C -0.279 4.279 8 C 0.390 3.610 9 O -0.465 6.465 10 N -0.339 5.339 11 C -0.027 4.027 12 C 0.056 3.944 13 H 0.080 0.920 14 N -0.360 5.360 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.260 4.260 18 N -0.616 5.616 19 Si 0.798 3.202 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.194 1.194 23 C -0.165 4.165 24 C 0.035 3.965 25 H 0.088 0.912 26 C -0.209 4.209 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.220 0.780 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.551 11.554 -5.416 19.353 hybrid contribution 1.141 0.240 0.428 1.242 sum -13.409 11.795 -4.988 18.542 Atomic orbital electron populations 1.20439 0.85779 1.03950 1.03819 1.20484 0.94465 0.85703 1.01457 1.41515 1.05622 1.08720 1.57424 0.72518 1.22177 0.86664 0.95894 1.08309 1.22344 0.95414 0.95083 1.08911 1.20225 0.94736 0.91708 1.21184 1.17405 0.82867 0.84542 0.76177 1.90653 1.21692 1.83550 1.50610 1.48370 1.20174 1.06473 1.58916 1.23152 0.83078 1.00828 0.95632 1.21482 0.84912 0.92416 0.95629 0.91978 1.42407 1.04552 1.62769 1.26307 1.19601 0.92225 1.25688 0.99931 0.90590 1.25479 0.97280 1.01724 1.01472 1.69803 1.07350 1.45965 1.38525 0.85214 0.77364 0.78279 0.79338 1.21573 1.22324 1.19434 1.22933 0.96138 0.98291 0.99090 1.21554 0.95765 0.79655 0.99567 0.91161 1.22061 0.96579 1.02544 0.99700 0.89821 0.91285 0.88660 0.78003 0.84648 0.92641 0.91556 0.79010 0.93975 0.88820 0.90851 0.92529 0.89809 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.76 71.23 0.70 -0.91 16 2 C 0.10 2.38 7.17 41.78 0.30 2.68 16 3 N -0.54 -9.33 5.90 -182.72 -1.08 -10.41 16 4 H 0.43 3.83 8.96 -92.71 -0.83 3.00 16 5 C 0.00 -0.05 11.89 83.12 0.99 0.93 16 6 C -0.19 -5.56 9.20 23.62 0.22 -5.35 16 7 C -0.27 -8.44 5.90 -19.04 -0.11 -8.55 16 8 C 0.60 21.43 7.52 86.62 0.65 22.08 16 9 O -0.58 -22.50 14.19 -4.10 -0.06 -22.55 16 10 N -0.61 -21.06 3.08 -791.63 -2.44 -23.49 16 11 C 0.10 3.63 4.93 86.93 0.43 4.05 16 12 C 0.17 6.46 3.73 46.46 0.17 6.63 16 13 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 14 N -0.72 -34.81 5.24 -316.03 -1.66 -36.47 16 15 C -0.24 -12.93 9.96 84.04 0.84 -12.10 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.97 -57.25 13.06 21.65 0.28 -56.97 16 19 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 C -0.13 -4.06 6.14 31.79 0.20 -3.87 16 24 C 0.14 4.33 3.53 45.35 0.16 4.49 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 C -0.15 -4.28 9.05 71.98 0.65 -3.63 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.68 7.13 -2.39 -0.02 1.67 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.14 4.21 6.15 -2.91 -0.02 4.19 16 32 H 0.06 2.14 7.34 -2.39 -0.02 2.12 16 33 H 0.07 2.49 6.89 -2.38 -0.02 2.48 16 34 H 0.38 19.51 7.76 -92.71 -0.72 18.79 16 35 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 36 H 0.09 2.75 7.83 -2.39 -0.02 2.73 16 37 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 38 H 0.06 1.77 6.59 -2.39 -0.02 1.75 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -68.81 326.26 2.24 -66.56 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.49 Total: 33.36 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.65 Total: 3.23 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -4.89 Total: -127.34 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.81 2.24 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.840 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds