Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34652 * 125.80389 * 2 1 4 4 H 0.97002 * 124.85385 * 359.96003 * 3 2 1 5 5 C 1.36441 * 110.29763 * 179.97438 * 3 2 1 6 6 C 1.34487 * 108.85922 * 359.74331 * 5 3 2 7 7 C 1.36767 * 125.79838 * 179.97438 * 2 1 3 8 8 C 1.47272 * 126.94245 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99626 * 34.29911 * 8 7 2 10 10 N 1.34771 * 119.99829 * 214.29564 * 8 7 2 11 11 C 1.47422 * 125.65296 * 355.71012 * 10 8 7 12 12 C 1.54909 * 104.83655 * 155.90513 * 11 10 8 13 13 H 1.08998 * 111.00229 * 155.11969 * 12 11 10 14 14 N 1.46507 * 111.00004 * 278.93250 * 12 11 10 15 15 C 1.36935 * 119.99690 * 273.54607 * 14 12 11 16 16 H 1.08000 * 120.00594 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99730 * 179.72922 * 15 14 12 18 18 N 1.31614 * 120.00268 * 0.26769 * 17 15 14 19 19 Si 1.86800 * 120.00171 * 180.27475 * 17 15 14 20 20 H 1.48506 * 109.47057 * 59.99651 * 19 17 15 21 21 H 1.48497 * 109.47367 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47177 * 299.99884 * 19 17 15 23 23 C 1.55154 * 101.58209 * 37.00416 * 12 11 10 24 24 C 1.47021 * 125.64785 * 175.73985 * 10 8 7 25 25 H 1.09007 * 109.88788 * 300.44891 * 24 10 8 26 26 C 1.53004 * 109.87798 * 61.61023 * 24 10 8 27 27 H 1.08997 * 109.46824 * 270.02539 * 1 2 3 28 28 H 1.09000 * 109.47193 * 30.01654 * 1 2 3 29 29 H 1.08992 * 109.47581 * 150.02302 * 1 2 3 30 30 H 1.08001 * 125.57535 * 180.02562 * 5 3 2 31 31 H 1.08002 * 126.83763 * 180.25157 * 6 5 3 32 32 H 1.08999 * 110.36843 * 37.06056 * 11 10 8 33 33 H 1.09000 * 110.36322 * 274.74268 * 11 10 8 34 34 H 0.96998 * 119.99913 * 93.54571 * 14 12 11 35 35 H 0.97002 * 120.00818 * 180.02562 * 18 17 15 36 36 H 1.09000 * 110.71977 * 82.86639 * 23 12 11 37 37 H 1.08997 * 110.72053 * 206.13789 * 23 12 11 38 38 H 1.08994 * 109.47249 * 58.55016 * 26 24 10 39 39 H 1.09007 * 109.46869 * 178.54728 * 26 24 10 40 40 H 1.09002 * 109.47497 * 298.54365 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0006 5 6 3.6095 0.7273 0.0006 6 6 3.6882 -0.6153 0.0067 7 6 2.3070 -1.1093 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.8585 -2.8386 -0.5913 10 7 2.5912 -3.4448 0.6597 11 6 3.8775 -3.2104 1.3409 12 6 3.9701 -4.3285 2.4090 13 1 5.0083 -4.5364 2.6679 14 7 3.1939 -3.9807 3.6019 15 6 3.7641 -3.2299 4.5949 16 1 4.7862 -2.8943 4.4990 17 6 3.0268 -2.8956 5.7225 18 7 1.7814 -3.3048 5.8396 19 14 3.8021 -1.8648 7.0737 20 1 4.2210 -0.5532 6.5171 21 1 2.8132 -1.6479 8.1600 22 1 4.9884 -2.5732 7.6178 23 6 3.3318 -5.5282 1.6604 24 6 2.2258 -4.8602 0.8166 25 1 1.2678 -4.9411 1.3304 26 6 2.1416 -5.5310 -0.5559 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 4.4498 1.4058 0.0011 31 1 4.5889 -1.2111 0.0124 32 1 3.8816 -2.2298 1.8168 33 1 4.7021 -3.2929 0.6329 34 1 2.2760 -4.2824 3.6882 35 1 1.2660 -3.0709 6.6274 36 1 4.0650 -6.0164 1.0182 37 1 2.9021 -6.2389 2.3663 38 1 3.1014 -5.4398 -1.0644 39 1 1.8957 -6.5856 -0.4304 40 1 1.3677 -5.0459 -1.1507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988547376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = 22.315596 kcal Electronic energy + Delta-G solvation = -22256.879918 eV Core-core repulsion = 19072.522005 eV Total energy + Delta-G solvation = -3184.357914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01554 -39.28180 -36.96923 -33.86942 -31.94363 -31.39503 -31.20292 -30.11185 -28.32700 -26.22900 -25.29702 -23.73921 -22.98389 -20.67613 -20.55582 -19.54985 -17.96382 -17.39756 -17.12022 -16.10895 -15.41890 -14.73182 -14.45397 -14.36342 -13.69249 -13.51870 -13.48957 -13.13276 -13.07911 -12.78220 -12.52348 -12.41294 -12.25275 -12.05368 -11.71454 -11.50640 -11.37832 -11.05877 -10.87632 -10.65017 -10.53994 -10.26953 -9.94520 -9.66604 -9.30320 -8.95686 -8.55685 -8.09319 -7.84737 -6.95647 -5.76946 -3.06249 2.15364 2.68797 3.26316 3.42456 3.46899 3.48067 3.66416 3.93540 4.57533 5.00675 5.01993 5.17459 5.28055 5.35116 5.43255 5.55117 5.62108 5.67905 5.74080 5.79141 5.80339 5.94916 6.00341 6.09138 6.11510 6.14523 6.33635 6.34526 6.38296 6.54568 6.57656 6.76129 6.81205 6.96407 7.03498 7.19810 7.62112 7.68452 8.21647 8.40592 8.84290 9.52124 10.09019 10.43726 11.45221 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.007044 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.921430 B = 3974.076614 C = 5184.152567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.092 3.908 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.024 4.024 6 C -0.161 4.161 7 C -0.217 4.217 8 C 0.608 3.392 9 O -0.564 6.564 10 N -0.591 5.591 11 C 0.073 3.927 12 C 0.166 3.834 13 H 0.068 0.932 14 N -0.711 5.711 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.285 1.285 23 C -0.138 4.138 24 C 0.140 3.860 25 H 0.072 0.928 26 C -0.159 4.159 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 4.774 -13.013 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.025 4.025 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.151 4.151 6 C -0.185 4.185 7 C -0.226 4.226 8 C 0.399 3.601 9 O -0.445 6.445 10 N -0.323 5.323 11 C -0.053 4.053 12 C 0.054 3.946 13 H 0.086 0.914 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.212 1.212 23 C -0.176 4.176 24 C 0.037 3.963 25 H 0.090 0.910 26 C -0.217 4.217 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.478 4.865 -13.203 14.287 hybrid contribution 0.158 1.093 0.946 1.454 sum 2.636 5.958 -12.257 13.881 Atomic orbital electron populations 1.20541 0.87482 1.04049 1.03342 1.20167 0.93459 0.85660 1.03217 1.41478 1.06213 1.08103 1.59257 0.75204 1.21637 0.85563 0.96410 1.11501 1.22091 0.95867 0.93405 1.07187 1.20053 0.93355 0.92009 1.17214 1.16967 0.82001 0.83579 0.77575 1.90665 1.26441 1.81714 1.45647 1.48156 1.22987 1.08597 1.52536 1.23420 0.83693 1.03490 0.94700 1.21369 0.95837 0.90540 0.86865 0.91393 1.42302 1.13789 1.62708 1.16322 1.19167 0.96518 1.25043 0.96566 0.91107 1.24735 0.96068 1.01213 0.98620 1.69654 1.08417 1.50073 1.29573 0.86298 0.78003 0.80238 0.81797 1.21357 1.21769 1.21212 1.23029 0.97565 0.98509 0.98523 1.21439 0.98732 0.80645 0.95526 0.91032 1.22143 1.02198 1.00011 0.97369 0.90609 0.91961 0.88214 0.81678 0.83808 0.89606 0.93200 0.78064 0.93463 0.90825 0.89958 0.93017 0.92306 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.21 36.01 0.37 -0.95 16 2 C 0.09 1.42 7.17 -81.89 -0.59 0.83 16 3 N -0.55 -6.72 5.90 -9.11 -0.05 -6.78 16 4 H 0.41 3.45 8.96 -40.82 -0.37 3.08 16 5 C -0.02 -0.30 11.89 -16.83 -0.20 -0.50 16 6 C -0.16 -2.44 9.11 -37.50 -0.34 -2.78 16 7 C -0.22 -3.85 5.76 -103.35 -0.60 -4.44 16 8 C 0.61 12.07 7.48 -12.59 -0.09 11.98 16 9 O -0.56 -12.09 14.29 5.26 0.08 -12.01 16 10 N -0.59 -11.08 3.06 -164.33 -0.50 -11.58 16 11 C 0.07 1.31 5.10 -2.53 -0.01 1.30 16 12 C 0.17 3.17 3.69 -65.78 -0.24 2.92 16 13 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 14 N -0.71 -17.38 5.27 -51.35 -0.27 -17.65 16 15 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C -0.14 -2.22 6.05 -24.90 -0.15 -2.37 16 24 C 0.14 2.44 3.48 -66.95 -0.23 2.20 16 25 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 26 C -0.16 -2.40 9.10 37.16 0.34 -2.06 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.55 6.52 -51.93 -0.34 1.21 16 30 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.14 2.00 6.73 -52.49 -0.35 1.64 16 32 H 0.09 1.73 6.59 -51.93 -0.34 1.38 16 33 H 0.05 0.76 7.75 -51.93 -0.40 0.36 16 34 H 0.39 10.29 7.82 -40.82 -0.32 9.97 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -33.16 327.12 -7.93 -41.09 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.81 Total: 13.04 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.00 Total: -0.93 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.10 Total: -63.26 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.16 -7.93 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.407 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds