Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34652 * 125.80389 * 2 1 4 4 H 0.97002 * 124.85385 * 359.96003 * 3 2 1 5 5 C 1.36441 * 110.29763 * 179.97438 * 3 2 1 6 6 C 1.34487 * 108.85922 * 359.74331 * 5 3 2 7 7 C 1.36767 * 125.79838 * 179.97438 * 2 1 3 8 8 C 1.47272 * 126.94245 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99626 * 34.29911 * 8 7 2 10 10 N 1.34771 * 119.99829 * 214.29564 * 8 7 2 11 11 C 1.47422 * 125.65296 * 355.71012 * 10 8 7 12 12 C 1.54909 * 104.83655 * 155.90513 * 11 10 8 13 13 H 1.08998 * 111.00229 * 155.11969 * 12 11 10 14 14 N 1.46507 * 111.00004 * 278.93250 * 12 11 10 15 15 C 1.36935 * 119.99690 * 273.54607 * 14 12 11 16 16 H 1.08000 * 120.00594 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99730 * 179.72922 * 15 14 12 18 18 N 1.31614 * 120.00268 * 0.26769 * 17 15 14 19 19 Si 1.86800 * 120.00171 * 180.27475 * 17 15 14 20 20 H 1.48506 * 109.47057 * 59.99651 * 19 17 15 21 21 H 1.48497 * 109.47367 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47177 * 299.99884 * 19 17 15 23 23 C 1.55154 * 101.58209 * 37.00416 * 12 11 10 24 24 C 1.47021 * 125.64785 * 175.73985 * 10 8 7 25 25 H 1.09007 * 109.88788 * 300.44891 * 24 10 8 26 26 C 1.53004 * 109.87798 * 61.61023 * 24 10 8 27 27 H 1.08997 * 109.46824 * 270.02539 * 1 2 3 28 28 H 1.09000 * 109.47193 * 30.01654 * 1 2 3 29 29 H 1.08992 * 109.47581 * 150.02302 * 1 2 3 30 30 H 1.08001 * 125.57535 * 180.02562 * 5 3 2 31 31 H 1.08002 * 126.83763 * 180.25157 * 6 5 3 32 32 H 1.08999 * 110.36843 * 37.06056 * 11 10 8 33 33 H 1.09000 * 110.36322 * 274.74268 * 11 10 8 34 34 H 0.96998 * 119.99913 * 93.54571 * 14 12 11 35 35 H 0.97002 * 120.00818 * 180.02562 * 18 17 15 36 36 H 1.09000 * 110.71977 * 82.86639 * 23 12 11 37 37 H 1.08997 * 110.72053 * 206.13789 * 23 12 11 38 38 H 1.08994 * 109.47249 * 58.55016 * 26 24 10 39 39 H 1.09007 * 109.46869 * 178.54728 * 26 24 10 40 40 H 1.09002 * 109.47497 * 298.54365 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0006 5 6 3.6095 0.7273 0.0006 6 6 3.6882 -0.6153 0.0067 7 6 2.3070 -1.1093 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.8585 -2.8386 -0.5913 10 7 2.5912 -3.4448 0.6597 11 6 3.8775 -3.2104 1.3409 12 6 3.9701 -4.3285 2.4090 13 1 5.0083 -4.5364 2.6679 14 7 3.1939 -3.9807 3.6019 15 6 3.7641 -3.2299 4.5949 16 1 4.7862 -2.8943 4.4990 17 6 3.0268 -2.8956 5.7225 18 7 1.7814 -3.3048 5.8396 19 14 3.8021 -1.8648 7.0737 20 1 4.2210 -0.5532 6.5171 21 1 2.8132 -1.6479 8.1600 22 1 4.9884 -2.5732 7.6178 23 6 3.3318 -5.5282 1.6604 24 6 2.2258 -4.8602 0.8166 25 1 1.2678 -4.9411 1.3304 26 6 2.1416 -5.5310 -0.5559 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 4.4498 1.4058 0.0011 31 1 4.5889 -1.2111 0.0124 32 1 3.8816 -2.2298 1.8168 33 1 4.7021 -3.2929 0.6329 34 1 2.2760 -4.2824 3.6882 35 1 1.2660 -3.0709 6.6274 36 1 4.0650 -6.0164 1.0182 37 1 2.9021 -6.2389 2.3663 38 1 3.1014 -5.4398 -1.0644 39 1 1.8957 -6.5856 -0.4304 40 1 1.3677 -5.0459 -1.1507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988547376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = -0.300739 kcal Electronic energy + Delta-G solvation = -22257.860636 eV Core-core repulsion = 19072.522005 eV Total energy + Delta-G solvation = -3185.338632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14466 -40.69296 -38.50079 -35.73681 -33.30931 -33.02528 -32.47517 -31.30473 -30.06546 -27.38815 -26.63098 -25.69592 -24.36461 -22.01461 -21.77642 -20.92290 -19.39959 -19.10826 -18.45472 -17.58499 -16.89600 -16.29518 -16.03388 -15.60659 -15.34174 -15.14894 -14.81546 -14.60958 -14.30057 -14.16680 -13.71802 -13.56614 -13.44958 -13.36592 -13.19727 -13.07192 -12.81436 -12.65368 -12.49559 -12.25109 -12.20830 -11.97310 -11.61430 -11.46285 -10.98768 -10.72832 -9.71583 -9.54043 -9.04726 -8.90316 -7.90201 -5.18584 0.89409 1.48090 1.50917 1.56622 1.60437 2.06711 2.45567 2.57806 2.59195 3.40914 3.65458 3.92393 3.94689 3.98010 4.13620 4.18310 4.30841 4.39503 4.42169 4.54168 4.63750 4.66999 4.74493 4.82079 4.85040 4.98160 5.00864 5.06158 5.15449 5.20139 5.26238 5.29879 5.40315 5.57137 5.64490 5.84849 6.04960 6.30354 6.70852 6.77663 7.36221 7.37638 8.12400 8.35078 9.33238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.007044 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.921430 B = 3974.076614 C = 5184.152567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.080 3.920 3 N -0.538 5.538 4 H 0.432 0.568 5 C -0.003 4.003 6 C -0.187 4.187 7 C -0.261 4.261 8 C 0.595 3.405 9 O -0.594 6.594 10 N -0.596 5.596 11 C 0.086 3.914 12 C 0.154 3.846 13 H 0.085 0.915 14 N -0.725 5.725 15 C -0.233 4.233 16 H 0.084 0.916 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.970 3.030 20 H -0.279 1.279 21 H -0.302 1.302 22 H -0.274 1.274 23 C -0.121 4.121 24 C 0.133 3.867 25 H 0.038 0.962 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.209 0.791 31 H 0.151 0.849 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.369 0.631 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 5.967 -13.921 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 N -0.135 5.135 4 H 0.272 0.728 5 C -0.131 4.131 6 C -0.211 4.211 7 C -0.271 4.271 8 C 0.387 3.613 9 O -0.478 6.478 10 N -0.327 5.327 11 C -0.040 4.040 12 C 0.044 3.956 13 H 0.103 0.897 14 N -0.363 5.363 15 C -0.364 4.364 16 H 0.101 0.899 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.799 3.201 20 H -0.206 1.206 21 H -0.229 1.229 22 H -0.200 1.200 23 C -0.159 4.159 24 C 0.030 3.970 25 H 0.056 0.944 26 C -0.204 4.204 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.226 0.774 31 H 0.169 0.831 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.020 6.074 -14.148 16.194 hybrid contribution -0.583 0.729 1.141 1.474 sum 4.438 6.803 -13.007 15.335 Atomic orbital electron populations 1.20488 0.86888 1.04650 1.02982 1.20359 0.94210 0.86251 1.03014 1.41486 1.05945 1.08423 1.57652 0.72826 1.22275 0.86433 0.96147 1.08270 1.22275 0.94949 0.94828 1.09024 1.20245 0.95515 0.91445 1.19897 1.17483 0.81720 0.84773 0.77298 1.90627 1.27680 1.82405 1.47054 1.48285 1.23256 1.08997 1.52178 1.23274 0.84395 1.01515 0.94785 1.21693 0.96121 0.92171 0.85588 0.89701 1.42502 1.13445 1.62586 1.17792 1.19619 0.96780 1.23473 0.96568 0.89855 1.25535 0.96661 1.03432 1.01336 1.69835 1.10045 1.52403 1.30006 0.85266 0.77060 0.78967 0.78801 1.20562 1.22906 1.20021 1.22967 0.97527 0.97210 0.98242 1.21530 0.97794 0.80733 0.96926 0.94408 1.22021 1.02224 1.00786 0.95376 0.91367 0.88226 0.90737 0.77405 0.83088 0.91889 0.89661 0.79984 0.94399 0.86912 0.90489 0.91424 0.89931 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.53 10.21 71.24 0.73 -1.81 16 2 C 0.08 2.43 7.17 41.78 0.30 2.73 16 3 N -0.54 -11.69 5.90 -182.73 -1.08 -12.76 16 4 H 0.43 5.80 8.96 -92.71 -0.83 4.97 16 5 C 0.00 -0.07 11.89 83.12 0.99 0.92 16 6 C -0.19 -5.37 9.11 23.62 0.22 -5.15 16 7 C -0.26 -9.30 5.76 -19.04 -0.11 -9.41 16 8 C 0.60 24.34 7.48 86.62 0.65 24.98 16 9 O -0.59 -26.79 14.29 -4.11 -0.06 -26.85 16 10 N -0.60 -22.48 3.06 -792.07 -2.43 -24.90 16 11 C 0.09 2.96 5.10 86.86 0.44 3.40 16 12 C 0.15 5.67 3.69 46.38 0.17 5.84 16 13 H 0.09 2.87 8.13 -2.39 -0.02 2.85 16 14 N -0.72 -35.62 5.27 -316.37 -1.67 -37.29 16 15 C -0.23 -12.49 9.98 84.03 0.84 -11.65 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 18 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 19 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C -0.12 -3.71 6.05 31.78 0.19 -3.51 16 24 C 0.13 4.66 3.48 45.34 0.16 4.82 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 C -0.15 -4.27 9.10 71.98 0.65 -3.61 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 2.43 6.52 -2.39 -0.02 2.41 16 30 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.15 3.91 6.73 -2.91 -0.02 3.89 16 32 H 0.06 2.49 6.59 -2.39 -0.02 2.48 16 33 H 0.09 2.35 7.75 -2.39 -0.02 2.34 16 34 H 0.37 20.34 7.82 -92.71 -0.72 19.61 16 35 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.11 2.61 7.85 -2.39 -0.02 2.59 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.04 1.49 6.75 -2.39 -0.02 1.48 16 Total: -1.00 -75.06 327.12 2.28 -72.78 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.49 Total: 37.57 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.69 Total: 3.57 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -4.89 Total: -134.86 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -75.06 2.28 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988547376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.481 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds