Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39830 * 126.45883 * 2 1 4 4 C 1.35456 * 107.86621 * 180.30125 * 3 2 1 5 5 N 1.35531 * 108.86963 * 359.74365 * 4 3 2 6 6 H 0.97001 * 125.68182 * 179.97438 * 5 4 3 7 7 C 1.37658 * 108.64727 * 359.97438 * 5 4 3 8 8 C 1.46670 * 126.23503 * 180.02562 * 7 5 4 9 9 O 1.21700 * 120.00090 * 173.55978 * 8 7 5 10 10 N 1.34775 * 120.00334 * 353.55577 * 8 7 5 11 11 C 1.47428 * 125.64432 * 354.36859 * 10 8 7 12 12 C 1.54911 * 104.82815 * 204.14595 * 11 10 8 13 13 H 1.08998 * 111.00767 * 204.91546 * 12 11 10 14 14 N 1.46502 * 111.00521 * 81.06700 * 12 11 10 15 15 C 1.36930 * 120.00409 * 92.80156 * 14 12 11 16 16 H 1.07999 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00087 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99650 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47593 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47180 * 120.00330 * 19 17 15 22 22 H 1.48507 * 109.47164 * 240.00015 * 19 17 15 23 23 C 1.55157 * 101.58500 * 322.99255 * 12 11 10 24 24 C 1.47023 * 125.65261 * 174.38803 * 10 8 7 25 25 H 1.09000 * 110.00565 * 59.42945 * 24 10 8 26 26 C 1.53004 * 109.88115 * 298.34292 * 24 10 8 27 27 H 1.09002 * 109.46811 * 270.13575 * 1 2 3 28 28 H 1.08999 * 109.47466 * 30.13265 * 1 2 3 29 29 H 1.08998 * 109.47507 * 150.14174 * 1 2 3 30 30 H 1.08004 * 126.06907 * 0.06690 * 3 2 1 31 31 H 1.08000 * 125.56848 * 179.70388 * 4 3 2 32 32 H 1.08994 * 110.36963 * 85.31224 * 11 10 8 33 33 H 1.08997 * 110.36590 * 322.98116 * 11 10 8 34 34 H 0.97008 * 120.00072 * 272.80236 * 14 12 11 35 35 H 0.97007 * 119.99245 * 180.02562 * 18 17 15 36 36 H 1.08996 * 110.72442 * 153.86610 * 23 12 11 37 37 H 1.09007 * 110.71365 * 276.96190 * 23 12 11 38 38 H 1.09004 * 109.47165 * 302.18758 * 26 24 10 39 39 H 1.09001 * 109.47224 * 62.18953 * 26 24 10 40 40 H 1.09005 * 109.46912 * 182.19088 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2245 -0.0095 7 6 2.3262 -1.1090 0.0031 8 6 1.8898 -2.5093 0.0079 9 8 0.7096 -2.7784 0.1336 10 7 2.7958 -3.4980 -0.1270 11 6 4.2324 -3.3151 -0.4031 12 6 4.6812 -4.6424 -1.0638 13 1 5.7484 -4.8097 -0.9188 14 7 4.3373 -4.6628 -2.4877 15 6 5.2489 -4.2409 -3.4183 16 1 6.2216 -3.8935 -3.1027 17 6 4.9229 -4.2597 -4.7675 18 7 3.7373 -4.6825 -5.1522 19 14 6.1662 -3.6835 -6.0369 20 1 7.4133 -3.2590 -5.3513 21 1 6.4695 -4.7956 -6.9732 22 1 5.6042 -2.5371 -6.7955 23 6 3.8430 -5.6824 -0.2744 24 6 2.5150 -4.9374 -0.0236 25 1 1.7792 -5.2287 -0.7731 26 6 1.9902 -5.2660 1.3756 27 1 -0.3633 0.0024 1.0277 28 1 -0.3634 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5116 30 1 2.0137 2.1548 0.0010 31 1 4.4973 1.3251 -0.0130 32 1 4.7790 -3.1497 0.5252 33 1 4.3839 -2.4805 -1.0875 34 1 3.4638 -4.9751 -2.7714 35 1 3.5097 -4.6960 -6.0951 36 1 3.6758 -6.5777 -0.8733 37 1 4.3302 -5.9355 0.6673 38 1 2.7229 -4.9557 2.1206 39 1 1.0526 -4.7367 1.5455 40 1 1.8212 -6.3398 1.4573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988748646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 26.987194 kcal Electronic energy + Delta-G solvation = -22243.378712 eV Core-core repulsion = 19059.223374 eV Total energy + Delta-G solvation = -3184.155338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23158 -39.36542 -37.24168 -34.08159 -32.63310 -31.57349 -31.40791 -29.18513 -28.56012 -26.76203 -25.52398 -23.86339 -22.94837 -20.94196 -20.60272 -19.52274 -18.71468 -17.45313 -17.17169 -16.25898 -15.63990 -14.94599 -14.56237 -14.30886 -13.79292 -13.72076 -13.51626 -13.24781 -13.00855 -12.80498 -12.67966 -12.46195 -12.29979 -12.07715 -11.90176 -11.71755 -11.37625 -11.20285 -11.03970 -10.84943 -10.72901 -10.35947 -10.07822 -9.81128 -9.56752 -9.12867 -8.60761 -8.37429 -7.89385 -7.13112 -5.89811 -3.21336 1.73820 2.90305 3.21140 3.34597 3.39320 3.42946 3.43929 3.70624 4.45979 4.76108 5.01254 5.13071 5.17515 5.27407 5.35369 5.36817 5.50055 5.52198 5.60882 5.68007 5.79206 5.83792 5.90750 6.03348 6.04068 6.09447 6.12991 6.28826 6.33242 6.36619 6.47196 6.55692 6.62149 6.71527 6.96029 7.16849 7.55592 7.56871 7.88781 8.26731 8.51906 9.38850 9.93209 10.27623 11.31820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.006342 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.612929 B = 4413.742861 C = 5466.317131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.085 4.085 3 C -0.214 4.214 4 C 0.016 3.984 5 N -0.539 5.539 6 H 0.419 0.581 7 C -0.044 4.044 8 C 0.603 3.397 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.054 3.946 12 C 0.172 3.828 13 H 0.076 0.924 14 N -0.709 5.709 15 C -0.254 4.254 16 H 0.073 0.927 17 C -0.006 4.006 18 N -0.924 5.924 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.139 4.139 24 C 0.140 3.860 25 H 0.076 0.924 26 C -0.159 4.159 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.167 0.833 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 5.757 13.472 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.239 4.239 4 C -0.121 4.121 5 N -0.138 5.138 6 H 0.262 0.738 7 C -0.157 4.157 8 C 0.394 3.606 9 O -0.416 6.416 10 N -0.333 5.333 11 C -0.073 4.073 12 C 0.059 3.941 13 H 0.094 0.906 14 N -0.349 5.349 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.178 4.178 24 C 0.037 3.963 25 H 0.094 0.906 26 C -0.217 4.217 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.157 0.843 31 H 0.185 0.815 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.116 5.551 13.405 14.509 hybrid contribution 0.932 0.204 -0.963 1.356 sum 1.049 5.755 12.441 13.748 Atomic orbital electron populations 1.20265 0.89560 1.02580 1.01745 1.19880 0.95729 0.90789 1.02940 1.20719 0.91875 0.98510 1.12752 1.21978 0.99423 0.83412 1.07257 1.42677 1.07769 1.07299 1.56099 0.73785 1.20229 0.83727 0.93507 1.18231 1.16664 0.84814 0.82475 0.76685 1.90759 1.15931 1.83086 1.51775 1.48295 1.08905 1.06094 1.70046 1.23603 0.80981 1.04238 0.98451 1.21286 0.97194 0.89843 0.85769 0.90619 1.42346 1.17210 1.76715 0.98589 1.19249 0.95460 1.36756 0.87006 0.90944 1.24793 0.96874 1.01463 0.97199 1.69680 1.20003 1.51899 1.15494 0.86133 0.80254 0.78022 0.81780 1.20488 1.21675 1.21767 1.23089 0.94864 0.99245 1.00605 1.21465 0.97816 0.79832 0.97201 0.90570 1.22128 1.01849 1.01480 0.96221 0.91893 0.92327 0.90431 0.84332 0.81527 0.92805 0.90360 0.77875 0.93293 0.89588 0.90711 0.92945 0.91667 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.76 36.01 0.35 -0.90 16 2 C -0.08 -1.37 6.21 -104.16 -0.65 -2.02 16 3 C -0.21 -2.91 10.76 -39.98 -0.43 -3.34 16 4 C 0.02 0.20 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -7.70 5.37 -9.39 -0.05 -7.75 16 6 H 0.42 5.36 5.35 -40.82 -0.22 5.14 16 7 C -0.04 -0.76 6.82 -81.98 -0.56 -1.32 16 8 C 0.60 11.49 7.56 -12.86 -0.10 11.39 16 9 O -0.54 -11.28 14.17 5.19 0.07 -11.20 16 10 N -0.60 -10.46 3.06 -164.55 -0.50 -10.96 16 11 C 0.05 0.87 4.94 -2.53 -0.01 0.86 16 12 C 0.17 3.04 3.72 -65.78 -0.24 2.80 16 13 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 14 N -0.71 -16.60 5.23 -51.35 -0.27 -16.87 16 15 C -0.25 -6.61 9.96 -15.06 -0.15 -6.76 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -27.38 13.06 55.49 0.72 -26.65 16 19 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C -0.14 -2.08 6.07 -24.90 -0.15 -2.23 16 24 C 0.14 2.27 3.42 -66.95 -0.23 2.04 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 C -0.16 -2.20 9.10 37.16 0.34 -1.86 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.31 6.65 -51.93 -0.35 0.97 16 30 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.05 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.08 1.38 6.20 -51.93 -0.32 1.06 16 34 H 0.39 10.04 7.86 -40.82 -0.32 9.72 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.91 7.86 -51.92 -0.41 0.51 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.02 7.09 -51.93 -0.37 0.65 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -31.76 325.54 -8.01 -39.77 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.74 Total: 13.74 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.13 Total: -1.61 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.10 Total: -62.23 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.76 -8.01 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988748646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.753 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds