Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39830 * 126.45883 * 2 1 4 4 C 1.35456 * 107.86621 * 180.30125 * 3 2 1 5 5 N 1.35531 * 108.86963 * 359.74365 * 4 3 2 6 6 H 0.97001 * 125.68182 * 179.97438 * 5 4 3 7 7 C 1.37658 * 108.64727 * 359.97438 * 5 4 3 8 8 C 1.46670 * 126.23503 * 180.02562 * 7 5 4 9 9 O 1.21700 * 120.00090 * 173.55978 * 8 7 5 10 10 N 1.34775 * 120.00334 * 353.55577 * 8 7 5 11 11 C 1.47428 * 125.64432 * 354.36859 * 10 8 7 12 12 C 1.54911 * 104.82815 * 204.14595 * 11 10 8 13 13 H 1.08998 * 111.00767 * 204.91546 * 12 11 10 14 14 N 1.46502 * 111.00521 * 81.06700 * 12 11 10 15 15 C 1.36930 * 120.00409 * 92.80156 * 14 12 11 16 16 H 1.07999 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.38818 * 120.00087 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99650 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47593 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47180 * 120.00330 * 19 17 15 22 22 H 1.48507 * 109.47164 * 240.00015 * 19 17 15 23 23 C 1.55157 * 101.58500 * 322.99255 * 12 11 10 24 24 C 1.47023 * 125.65261 * 174.38803 * 10 8 7 25 25 H 1.09000 * 110.00565 * 59.42945 * 24 10 8 26 26 C 1.53004 * 109.88115 * 298.34292 * 24 10 8 27 27 H 1.09002 * 109.46811 * 270.13575 * 1 2 3 28 28 H 1.08999 * 109.47466 * 30.13265 * 1 2 3 29 29 H 1.08998 * 109.47507 * 150.14174 * 1 2 3 30 30 H 1.08004 * 126.06907 * 0.06690 * 3 2 1 31 31 H 1.08000 * 125.56848 * 179.70388 * 4 3 2 32 32 H 1.08994 * 110.36963 * 85.31224 * 11 10 8 33 33 H 1.08997 * 110.36590 * 322.98116 * 11 10 8 34 34 H 0.97008 * 120.00072 * 272.80236 * 14 12 11 35 35 H 0.97007 * 119.99245 * 180.02562 * 18 17 15 36 36 H 1.08996 * 110.72442 * 153.86610 * 23 12 11 37 37 H 1.09007 * 110.71365 * 276.96190 * 23 12 11 38 38 H 1.09004 * 109.47165 * 302.18758 * 26 24 10 39 39 H 1.09001 * 109.47224 * 62.18953 * 26 24 10 40 40 H 1.09005 * 109.46912 * 182.19088 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2245 -0.0095 7 6 2.3262 -1.1090 0.0031 8 6 1.8898 -2.5093 0.0079 9 8 0.7096 -2.7784 0.1336 10 7 2.7958 -3.4980 -0.1270 11 6 4.2324 -3.3151 -0.4031 12 6 4.6812 -4.6424 -1.0638 13 1 5.7484 -4.8097 -0.9188 14 7 4.3373 -4.6628 -2.4877 15 6 5.2489 -4.2409 -3.4183 16 1 6.2216 -3.8935 -3.1027 17 6 4.9229 -4.2597 -4.7675 18 7 3.7373 -4.6825 -5.1522 19 14 6.1662 -3.6835 -6.0369 20 1 7.4133 -3.2590 -5.3513 21 1 6.4695 -4.7956 -6.9732 22 1 5.6042 -2.5371 -6.7955 23 6 3.8430 -5.6824 -0.2744 24 6 2.5150 -4.9374 -0.0236 25 1 1.7792 -5.2287 -0.7731 26 6 1.9902 -5.2660 1.3756 27 1 -0.3633 0.0024 1.0277 28 1 -0.3634 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5116 30 1 2.0137 2.1548 0.0010 31 1 4.4973 1.3251 -0.0130 32 1 4.7790 -3.1497 0.5252 33 1 4.3839 -2.4805 -1.0875 34 1 3.4638 -4.9751 -2.7714 35 1 3.5097 -4.6960 -6.0951 36 1 3.6758 -6.5777 -0.8733 37 1 4.3302 -5.9355 0.6673 38 1 2.7229 -4.9557 2.1206 39 1 1.0526 -4.7367 1.5455 40 1 1.8212 -6.3398 1.4573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988748646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 6.054231 kcal Electronic energy + Delta-G solvation = -22244.286434 eV Core-core repulsion = 19059.223374 eV Total energy + Delta-G solvation = -3185.063059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39206 -40.67269 -38.69034 -35.85979 -33.83733 -33.16527 -32.81014 -30.32000 -30.18629 -27.97996 -26.75314 -25.76033 -24.26081 -22.05421 -21.97837 -20.81095 -19.89207 -19.31773 -18.50664 -17.67372 -16.95230 -16.49840 -16.06565 -15.69172 -15.38580 -15.03921 -14.96817 -14.60708 -14.23716 -14.11014 -13.90895 -13.62194 -13.55249 -13.26447 -13.19371 -13.14048 -12.92888 -12.75108 -12.53359 -12.31345 -12.20055 -12.08041 -11.68194 -11.52052 -11.10878 -10.92247 -9.81825 -9.65666 -9.12841 -8.97564 -7.96737 -5.26606 0.50355 1.46461 1.46823 1.56539 1.84213 1.94226 2.31575 2.38360 2.53612 3.33785 3.49850 3.77371 3.85757 3.92120 4.07721 4.23071 4.25852 4.31766 4.38295 4.43826 4.53955 4.63135 4.68723 4.85740 4.86321 4.87338 4.98377 5.07099 5.12591 5.15349 5.17239 5.31835 5.43353 5.46928 5.51832 5.83649 6.02690 6.23445 6.51389 6.57905 7.12980 7.30045 8.04226 8.26377 9.26821 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.006342 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.612929 B = 4413.742861 C = 5466.317131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.101 4.101 3 C -0.226 4.226 4 C 0.037 3.963 5 N -0.535 5.535 6 H 0.425 0.575 7 C -0.086 4.086 8 C 0.591 3.409 9 O -0.574 6.574 10 N -0.604 5.604 11 C 0.063 3.937 12 C 0.160 3.840 13 H 0.097 0.903 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.089 0.911 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.970 3.030 20 H -0.257 1.257 21 H -0.297 1.297 22 H -0.302 1.302 23 C -0.123 4.123 24 C 0.134 3.866 25 H 0.039 0.961 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.165 0.835 31 H 0.213 0.787 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 7.162 15.379 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C -0.250 4.250 4 C -0.100 4.100 5 N -0.136 5.136 6 H 0.269 0.731 7 C -0.199 4.199 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.336 5.336 11 C -0.063 4.063 12 C 0.049 3.951 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.369 4.369 16 H 0.107 0.893 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.181 1.181 21 H -0.224 1.224 22 H -0.230 1.230 23 C -0.161 4.161 24 C 0.031 3.969 25 H 0.057 0.943 26 C -0.204 4.204 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.183 0.817 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.933 6.952 15.378 17.129 hybrid contribution 0.089 -0.184 -1.453 1.468 sum 3.022 6.767 13.924 15.774 Atomic orbital electron populations 1.20236 0.89513 1.02041 1.02092 1.20292 0.96358 0.91792 1.02544 1.21085 0.91951 0.99018 1.12912 1.22770 1.00667 0.82796 1.03733 1.42670 1.06866 1.08179 1.55855 0.73078 1.20129 0.85431 0.92793 1.21520 1.17085 0.84636 0.83621 0.76361 1.90721 1.17333 1.83820 1.53640 1.48402 1.09405 1.06240 1.69521 1.23535 0.80468 1.02305 0.99945 1.21650 0.98758 0.91564 0.83098 0.88536 1.42565 1.16022 1.76773 1.00953 1.19738 0.96007 1.33734 0.87401 0.89293 1.25594 0.98569 1.03280 0.99503 1.69855 1.22322 1.54998 1.15006 0.85119 0.78926 0.76697 0.79275 1.18063 1.22428 1.23007 1.23020 0.93536 0.97769 1.01803 1.21549 0.97974 0.79711 0.97704 0.94318 1.22016 1.00952 1.02585 0.94844 0.91127 0.90166 0.93506 0.81737 0.77033 0.88351 0.91947 0.80024 0.94318 0.90483 0.86585 0.91086 0.94114 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.46 9.76 71.24 0.70 -1.76 16 2 C -0.10 -3.20 6.21 -19.56 -0.12 -3.32 16 3 C -0.23 -5.54 10.76 22.01 0.24 -5.30 16 4 C 0.04 0.79 11.89 83.48 0.99 1.79 16 5 N -0.54 -14.10 5.37 -183.62 -0.99 -15.08 16 6 H 0.43 9.67 5.35 -92.71 -0.50 9.18 16 7 C -0.09 -2.95 6.82 40.35 0.28 -2.68 16 8 C 0.59 23.10 7.56 86.44 0.65 23.75 16 9 O -0.57 -25.51 14.17 -4.35 -0.06 -25.57 16 10 N -0.60 -20.88 3.06 -792.72 -2.43 -23.31 16 11 C 0.06 1.88 4.94 86.86 0.43 2.31 16 12 C 0.16 5.31 3.72 46.38 0.17 5.48 16 13 H 0.10 2.85 8.09 -2.39 -0.02 2.83 16 14 N -0.73 -33.87 5.23 -316.37 -1.66 -35.52 16 15 C -0.24 -12.17 9.96 84.04 0.84 -11.34 16 16 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 18 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 19 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 23 C -0.12 -3.42 6.07 31.78 0.19 -3.22 16 24 C 0.13 4.33 3.42 45.34 0.16 4.49 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 C -0.15 -3.90 9.10 71.98 0.66 -3.24 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.68 6.65 -2.39 -0.02 1.67 16 30 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.10 2.10 7.85 -2.39 -0.02 2.09 16 33 H 0.06 2.09 6.20 -2.39 -0.01 2.07 16 34 H 0.37 19.76 7.86 -92.70 -0.73 19.03 16 35 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.12 2.32 7.86 -2.38 -0.02 2.30 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.29 7.09 -2.39 -0.02 1.27 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -72.90 325.54 2.65 -70.25 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.17 Total: 38.57 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.64 Total: 3.12 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -4.79 Total: -133.14 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.90 2.65 -70.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988748646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.300 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds