Wall clock time and date at job start Mon Mar 30 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39826 * 126.45813 * 2 1 4 4 C 1.35457 * 107.86709 * 180.26392 * 3 2 1 5 5 N 1.35531 * 108.86865 * 359.74310 * 4 3 2 6 6 H 0.97001 * 125.67741 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64594 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.23468 * 180.02562 * 7 5 4 9 9 O 1.21697 * 120.00029 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00249 * 0.02562 * 8 7 5 11 11 C 1.47028 * 125.64452 * 359.97438 * 10 8 7 12 12 C 1.54323 * 107.26786 * 178.97303 * 11 10 8 13 13 H 1.08994 * 110.72105 * 96.34796 * 12 11 10 14 14 N 1.46504 * 110.71638 * 219.44526 * 12 11 10 15 15 C 1.36943 * 119.99781 * 273.54735 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47169 * 300.00118 * 19 17 15 23 23 C 1.55150 * 102.94470 * 337.80611 * 12 11 10 24 24 C 1.47424 * 125.65282 * 180.02562 * 10 8 7 25 25 H 1.09000 * 110.36372 * 85.25818 * 24 10 8 26 26 C 1.52999 * 110.36529 * 323.04959 * 24 10 8 27 27 H 1.09002 * 109.47190 * 270.18102 * 1 2 3 28 28 H 1.09001 * 109.47356 * 30.18083 * 1 2 3 29 29 H 1.09000 * 109.47088 * 150.18310 * 1 2 3 30 30 H 1.07999 * 126.07152 * 0.02562 * 3 2 1 31 31 H 1.07997 * 125.56471 * 179.71761 * 4 3 2 32 32 H 1.09000 * 109.88075 * 59.55351 * 11 10 8 33 33 H 1.08994 * 110.01078 * 298.46498 * 11 10 8 34 34 H 0.97000 * 120.00410 * 93.55060 * 14 12 11 35 35 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 36 36 H 1.09000 * 111.00451 * 153.57802 * 23 12 11 37 37 H 1.09002 * 111.00398 * 277.43197 * 23 12 11 38 38 H 1.08997 * 109.47228 * 61.44694 * 26 24 10 39 39 H 1.08994 * 109.47063 * 181.45583 * 26 24 10 40 40 H 1.09004 * 109.46590 * 301.45075 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0039 6 1 4.4191 -1.2244 -0.0075 7 6 2.3263 -1.1089 0.0040 8 6 1.8899 -2.5093 0.0091 9 8 0.7026 -2.7766 0.0156 10 7 2.8036 -3.5000 0.0066 11 6 4.2628 -3.3197 -0.0016 12 6 4.8982 -4.7258 0.0247 13 1 5.1566 -5.0512 -0.9829 14 7 6.0787 -4.7449 0.8922 15 6 7.3029 -4.3916 0.3904 16 1 7.3982 -4.0992 -0.6449 17 6 8.4223 -4.4152 1.2108 18 7 8.3063 -4.7720 2.4724 19 14 10.0936 -3.9407 0.5244 20 1 10.0446 -2.5433 0.0243 21 1 11.1169 -4.0472 1.5951 22 1 10.4475 -4.8538 -0.5920 23 6 3.7673 -5.6072 0.6173 24 6 2.5057 -4.9438 0.0105 25 1 2.3415 -5.3000 -1.0065 26 6 1.2795 -5.2320 0.8790 27 1 -0.3634 0.0032 1.0277 28 1 -0.3634 0.8884 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 2.0137 2.1548 0.0004 31 1 4.4972 1.3252 -0.0118 32 1 4.5717 -2.7567 0.8791 33 1 4.5683 -2.7917 -0.9049 34 1 5.9932 -5.0078 1.8220 35 1 9.0885 -4.7881 3.0457 36 1 3.8630 -6.6410 0.2853 37 1 3.7551 -5.5476 1.7057 38 1 0.4133 -4.7134 0.4683 39 1 1.0880 -6.3049 0.8925 40 1 1.4639 -4.8831 1.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988748647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:06 Heat of formation + Delta-G solvation = 9.985725 kcal Electronic energy + Delta-G solvation = -21964.501624 eV Core-core repulsion = 18779.609047 eV Total energy + Delta-G solvation = -3184.892577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42492 -40.71757 -38.68085 -36.01890 -33.84847 -33.24257 -32.89361 -30.32346 -30.11952 -27.98968 -26.65900 -25.86146 -24.03156 -22.23343 -21.89650 -21.06958 -19.89748 -19.25504 -18.34313 -17.69925 -17.12459 -16.49001 -16.25217 -15.63890 -15.46283 -15.07771 -14.71695 -14.63503 -14.38108 -14.30041 -13.88525 -13.61311 -13.50834 -13.34527 -13.16214 -13.09154 -12.92712 -12.80392 -12.48991 -12.40214 -12.19242 -12.14701 -11.77649 -11.58970 -11.04545 -10.68246 -9.82956 -9.67788 -9.13204 -9.08344 -7.97233 -5.28548 0.47309 1.49719 1.51080 1.57303 1.81973 1.86433 2.29708 2.33078 2.54768 3.32786 3.40819 3.73904 3.79580 3.86731 4.10552 4.20482 4.23269 4.24904 4.38330 4.44428 4.47025 4.57658 4.67441 4.78342 4.88098 4.91977 4.96939 5.05588 5.06988 5.17361 5.24806 5.27573 5.44502 5.50651 5.51734 5.82716 6.03482 6.22467 6.43620 6.50156 7.09664 7.30825 8.00721 8.25225 9.25193 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.005347 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.972942 B = 5235.770208 C = 6544.302901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.093 4.093 3 C -0.222 4.222 4 C 0.031 3.969 5 N -0.543 5.543 6 H 0.422 0.578 7 C -0.091 4.091 8 C 0.596 3.404 9 O -0.556 6.556 10 N -0.613 5.613 11 C 0.077 3.923 12 C 0.169 3.831 13 H 0.075 0.925 14 N -0.723 5.723 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.966 5.966 19 Si 0.969 3.031 20 H -0.275 1.275 21 H -0.301 1.301 22 H -0.278 1.278 23 C -0.125 4.125 24 C 0.137 3.863 25 H 0.089 0.911 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 7.212 -6.298 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.246 4.246 4 C -0.106 4.106 5 N -0.143 5.143 6 H 0.266 0.734 7 C -0.204 4.204 8 C 0.388 3.612 9 O -0.437 6.437 10 N -0.346 5.346 11 C -0.050 4.050 12 C 0.058 3.942 13 H 0.093 0.907 14 N -0.362 5.362 15 C -0.379 4.379 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.616 5.616 19 Si 0.798 3.202 20 H -0.201 1.201 21 H -0.227 1.227 22 H -0.204 1.204 23 C -0.163 4.163 24 C 0.035 3.965 25 H 0.107 0.893 26 C -0.212 4.212 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.220 0.780 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.779 6.989 -6.410 15.122 hybrid contribution 1.631 -0.115 0.402 1.683 sum -10.148 6.875 -6.008 13.651 Atomic orbital electron populations 1.20282 0.88830 1.02779 1.02074 1.20297 0.96540 0.91268 1.02090 1.21096 0.91616 0.99283 1.12589 1.22741 1.00817 0.82890 1.04180 1.42864 1.07328 1.08315 1.55839 0.73414 1.20269 0.84985 0.93259 1.21851 1.16984 0.84803 0.83189 0.76205 1.90684 1.16352 1.83338 1.53292 1.48548 1.06529 1.06916 1.72617 1.23133 0.79057 1.02542 1.00249 1.21328 0.86414 0.91093 0.95342 0.90693 1.42520 1.03083 1.80232 1.10408 1.19603 0.85884 1.36876 0.95584 0.89918 1.25514 1.01421 1.02839 0.96086 1.69799 1.29920 1.55607 1.06235 0.85290 0.79703 0.78410 0.76790 1.20116 1.22709 1.20449 1.23067 0.92469 1.00179 1.00604 1.21997 0.95551 0.78726 1.00214 0.89323 1.22069 0.97730 1.02749 0.98630 0.91698 0.89926 0.92143 0.81605 0.77971 0.92502 0.91423 0.79160 0.93974 0.88036 0.91520 0.91041 0.89741 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.83 71.24 0.70 -1.38 16 2 C -0.09 -2.63 6.21 -19.57 -0.12 -2.75 16 3 C -0.22 -5.10 10.76 22.01 0.24 -4.86 16 4 C 0.03 0.68 11.89 83.48 0.99 1.67 16 5 N -0.54 -14.82 5.61 -183.62 -1.03 -15.85 16 6 H 0.42 11.43 4.92 -92.71 -0.46 10.98 16 7 C -0.09 -2.87 6.89 40.35 0.28 -2.60 16 8 C 0.60 20.40 7.60 86.45 0.66 21.06 16 9 O -0.56 -20.57 12.45 -4.34 -0.05 -20.63 16 10 N -0.61 -19.38 3.24 -792.79 -2.57 -21.95 16 11 C 0.08 2.46 4.86 86.73 0.42 2.88 16 12 C 0.17 5.85 3.59 46.18 0.17 6.01 16 13 H 0.08 2.52 8.12 -2.39 -0.02 2.51 16 14 N -0.72 -32.58 5.18 -317.33 -1.64 -34.22 16 15 C -0.25 -12.35 9.98 84.03 0.84 -11.51 16 16 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 17 C -0.07 -3.47 5.50 84.86 0.47 -3.01 16 18 N -0.97 -55.63 13.06 21.65 0.28 -55.35 16 19 Si 0.97 42.81 29.55 68.60 2.03 44.83 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.12 -3.66 6.11 31.99 0.20 -3.47 16 24 C 0.14 3.87 3.76 45.47 0.17 4.04 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 C -0.15 -4.21 8.71 71.98 0.63 -3.58 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.74 6.49 -2.39 -0.02 1.73 16 30 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.06 2.02 6.98 -2.39 -0.02 2.01 16 33 H 0.07 2.02 7.23 -2.39 -0.02 2.00 16 34 H 0.38 18.65 7.71 -92.71 -0.72 17.94 16 35 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.14 7.92 -2.39 -0.02 2.12 16 38 H 0.07 2.19 5.88 -2.39 -0.01 2.18 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -62.80 322.47 2.53 -60.27 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.11 Total: 40.37 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.63 Total: 2.52 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.96 Total: -127.37 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.80 2.53 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988748647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.258 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds