Wall clock time and date at job start Mon Mar 30 2020 01:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39840 * 126.45862 * 2 1 4 4 C 1.35451 * 107.86801 * 180.30463 * 3 2 1 5 5 N 1.35535 * 108.87228 * 359.73588 * 4 3 2 6 6 H 0.96995 * 125.67924 * 180.02562 * 5 4 3 7 7 C 1.37661 * 108.64084 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.23133 * 180.02562 * 7 5 4 9 9 O 1.21694 * 119.99947 * 187.30662 * 8 7 5 10 10 N 1.34772 * 120.00060 * 7.30260 * 8 7 5 11 11 C 1.47430 * 125.64977 * 358.22508 * 10 8 7 12 12 C 1.54912 * 104.83037 * 155.90310 * 11 10 8 13 13 H 1.08996 * 111.00794 * 278.89678 * 12 11 10 14 14 N 1.46499 * 111.00329 * 155.08356 * 12 11 10 15 15 C 1.36939 * 119.99875 * 86.45162 * 14 12 11 16 16 H 1.08001 * 120.00096 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00044 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00179 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47089 * 89.99896 * 19 17 15 21 21 H 1.48500 * 109.47123 * 209.99864 * 19 17 15 22 22 H 1.48498 * 109.47453 * 329.99708 * 19 17 15 23 23 C 1.55161 * 101.58085 * 37.01318 * 12 11 10 24 24 C 1.47028 * 125.64994 * 178.26509 * 10 8 7 25 25 H 1.09003 * 109.88018 * 300.44371 * 24 10 8 26 26 C 1.52997 * 109.88021 * 61.45285 * 24 10 8 27 27 H 1.09006 * 109.46894 * 270.13514 * 1 2 3 28 28 H 1.08996 * 109.47142 * 30.13824 * 1 2 3 29 29 H 1.09000 * 109.47019 * 150.14289 * 1 2 3 30 30 H 1.08003 * 126.06438 * 0.06129 * 3 2 1 31 31 H 1.07998 * 125.56564 * 179.78018 * 4 3 2 32 32 H 1.09000 * 110.36419 * 37.06900 * 11 10 8 33 33 H 1.08994 * 110.36934 * 274.74117 * 11 10 8 34 34 H 0.97003 * 120.00272 * 266.18766 * 14 12 11 35 35 H 0.96998 * 120.00541 * 180.02562 * 18 17 15 36 36 H 1.08996 * 110.72052 * 82.86088 * 23 12 11 37 37 H 1.09003 * 110.71848 * 206.12806 * 23 12 11 38 38 H 1.08997 * 109.47032 * 58.54675 * 26 24 10 39 39 H 1.08999 * 109.47393 * 178.54917 * 26 24 10 40 40 H 1.09003 * 109.47424 * 298.55011 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0069 5 7 3.6285 -0.6624 -0.0053 6 1 4.4191 -1.2243 -0.0088 7 6 2.3263 -1.1089 0.0022 8 6 1.8899 -2.5092 0.0067 9 8 0.7102 -2.7793 -0.1208 10 7 2.7954 -3.4968 0.1520 11 6 4.2530 -3.3144 0.2781 12 6 4.7488 -4.5823 1.0171 13 1 4.5921 -4.4944 2.0922 14 7 6.1571 -4.8494 0.7148 15 6 7.1417 -4.2497 1.4538 16 1 6.8800 -3.5802 2.2599 17 6 8.4762 -4.5023 1.1670 18 7 8.7953 -5.3178 0.1844 19 14 9.8192 -3.6848 2.1756 20 1 10.1625 -4.5476 3.3346 21 1 11.0241 -3.4897 1.3298 22 1 9.3389 -2.3674 2.6643 23 6 3.8322 -5.6762 0.4082 24 6 2.4935 -4.9345 0.2102 25 1 1.8283 -5.1399 1.0490 26 6 1.8357 -5.3814 -1.0969 27 1 -0.3633 0.0024 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 2.0136 2.1549 0.0009 31 1 4.4972 1.3253 -0.0120 32 1 4.4743 -2.4226 0.8645 33 1 4.7133 -3.2453 -0.7074 34 1 6.3922 -5.4539 -0.0065 35 1 9.7277 -5.4946 -0.0159 36 1 4.2266 -6.0218 -0.5473 37 1 3.7129 -6.5090 1.1013 38 1 2.5028 -5.1659 -1.9315 39 1 1.6383 -6.4526 -1.0567 40 1 0.8973 -4.8439 -1.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988748649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:12 Heat of formation + Delta-G solvation = 29.264169 kcal Electronic energy + Delta-G solvation = -21923.304870 eV Core-core repulsion = 18739.248269 eV Total energy + Delta-G solvation = -3184.056601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34619 -39.45602 -37.35122 -34.33733 -32.75264 -31.69202 -31.51094 -29.27411 -28.55235 -26.87823 -25.51565 -24.06946 -22.78755 -21.07911 -20.54028 -19.85756 -18.82520 -17.48046 -17.22763 -16.39685 -15.73845 -15.03014 -14.80887 -14.24923 -13.84603 -13.73502 -13.64239 -13.25264 -13.12276 -12.94172 -12.73757 -12.53160 -12.42622 -12.17807 -12.16630 -11.73076 -11.49550 -11.24201 -11.10112 -10.87244 -10.73510 -10.42183 -10.13396 -9.89556 -9.68222 -9.15457 -8.70148 -8.52854 -8.00290 -7.23653 -5.97928 -3.30092 1.61804 2.81062 3.06070 3.30359 3.35204 3.37276 3.37858 3.54337 4.39324 4.66226 4.94250 5.04403 5.11398 5.17112 5.24471 5.37538 5.42118 5.44765 5.54700 5.69632 5.73252 5.79250 5.84315 5.92708 5.98763 6.01246 6.06968 6.18110 6.26028 6.30794 6.37825 6.45991 6.57547 6.69109 6.86103 7.07456 7.49423 7.50192 7.72085 8.18989 8.35003 9.31467 9.83880 10.19094 11.23642 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005349 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.280126 B = 5233.808433 C = 6595.209789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.084 4.084 3 C -0.216 4.216 4 C 0.020 3.980 5 N -0.540 5.540 6 H 0.424 0.576 7 C -0.052 4.052 8 C 0.602 3.398 9 O -0.538 6.538 10 N -0.611 5.611 11 C 0.061 3.939 12 C 0.175 3.825 13 H 0.067 0.933 14 N -0.711 5.711 15 C -0.256 4.256 16 H 0.072 0.928 17 C -0.004 4.004 18 N -0.927 5.927 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.281 1.281 23 C -0.136 4.136 24 C 0.141 3.859 25 H 0.074 0.926 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 7.077 -1.172 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.241 4.241 4 C -0.117 4.117 5 N -0.142 5.142 6 H 0.270 0.730 7 C -0.166 4.166 8 C 0.392 3.608 9 O -0.417 6.417 10 N -0.345 5.345 11 C -0.066 4.066 12 C 0.062 3.938 13 H 0.085 0.915 14 N -0.351 5.351 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.202 4.202 18 N -0.573 5.573 19 Si 0.739 3.261 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.174 4.174 24 C 0.037 3.963 25 H 0.092 0.908 26 C -0.219 4.219 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.186 0.814 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.232 6.893 -1.140 14.087 hybrid contribution 1.577 0.200 0.273 1.612 sum -10.655 7.093 -0.868 12.830 Atomic orbital electron populations 1.20316 0.89574 1.02751 1.01878 1.19884 0.95675 0.90757 1.02908 1.20741 0.91852 0.98545 1.12920 1.22068 0.99500 0.83549 1.06556 1.43019 1.07982 1.07504 1.55681 0.73004 1.20200 0.83870 0.93408 1.19074 1.16737 0.84845 0.82514 0.76665 1.90743 1.16181 1.83040 1.51690 1.48535 1.07692 1.06463 1.71772 1.23714 0.78769 1.02656 1.01459 1.21259 0.85620 0.90048 0.96843 0.91549 1.42333 0.98228 1.54522 1.40058 1.19229 0.86142 1.21997 1.11299 0.90983 1.24779 0.97264 0.99619 0.98496 1.69654 1.17476 1.38972 1.31228 0.86192 0.81699 0.78916 0.79336 1.21439 1.21609 1.20654 1.23004 0.93576 0.98452 1.02394 1.21513 0.97025 0.79454 0.98264 0.90790 1.22134 1.01656 1.01205 0.96899 0.91938 0.92286 0.90088 0.84285 0.81385 0.91634 0.90978 0.77719 0.93176 0.90211 0.90037 0.92615 0.91812 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.91 36.00 0.36 -0.79 16 2 C -0.08 -1.22 6.21 -104.16 -0.65 -1.87 16 3 C -0.22 -2.71 10.76 -39.98 -0.43 -3.14 16 4 C 0.02 0.24 11.89 -16.91 -0.20 0.04 16 5 N -0.54 -7.52 5.39 -9.39 -0.05 -7.57 16 6 H 0.42 5.77 5.19 -40.82 -0.21 5.56 16 7 C -0.05 -0.83 6.85 -81.98 -0.56 -1.39 16 8 C 0.60 10.27 7.62 -12.86 -0.10 10.18 16 9 O -0.54 -10.01 13.74 5.19 0.07 -9.94 16 10 N -0.61 -9.75 3.07 -164.54 -0.50 -10.25 16 11 C 0.06 0.99 5.16 -2.52 -0.01 0.98 16 12 C 0.17 3.13 3.69 -65.78 -0.24 2.89 16 13 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 14 N -0.71 -15.99 5.28 -51.35 -0.27 -16.26 16 15 C -0.26 -6.47 9.98 -15.06 -0.15 -6.62 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 19 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 C -0.14 -2.04 6.10 -24.90 -0.15 -2.19 16 24 C 0.14 2.07 3.46 -66.95 -0.23 1.83 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.16 -2.19 9.11 37.16 0.34 -1.85 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 30 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.07 1.04 5.51 -51.93 -0.29 0.76 16 33 H 0.07 1.23 8.12 -51.93 -0.42 0.80 16 34 H 0.39 9.34 7.71 -40.82 -0.31 9.03 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.08 1.22 7.71 -51.93 -0.40 0.82 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.03 6.81 -51.93 -0.35 0.67 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -29.32 324.31 -7.96 -37.29 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.67 Total: 13.48 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.13 Total: -2.14 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.10 Total: -59.48 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.32 -7.96 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988748649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.551 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds