Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39840 * 126.45862 * 2 1 4 4 C 1.35451 * 107.86801 * 180.30463 * 3 2 1 5 5 N 1.35535 * 108.87228 * 359.73588 * 4 3 2 6 6 H 0.96995 * 125.67924 * 180.02562 * 5 4 3 7 7 C 1.37661 * 108.64084 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.23133 * 180.02562 * 7 5 4 9 9 O 1.21694 * 119.99947 * 187.30662 * 8 7 5 10 10 N 1.34772 * 120.00060 * 7.30260 * 8 7 5 11 11 C 1.47430 * 125.64977 * 358.22508 * 10 8 7 12 12 C 1.54912 * 104.83037 * 155.90310 * 11 10 8 13 13 H 1.08996 * 111.00794 * 278.89678 * 12 11 10 14 14 N 1.46499 * 111.00329 * 155.08356 * 12 11 10 15 15 C 1.36939 * 119.99875 * 86.45162 * 14 12 11 16 16 H 1.08001 * 120.00096 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00044 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00179 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47089 * 89.99896 * 19 17 15 21 21 H 1.48500 * 109.47123 * 209.99864 * 19 17 15 22 22 H 1.48498 * 109.47453 * 329.99708 * 19 17 15 23 23 C 1.55161 * 101.58085 * 37.01318 * 12 11 10 24 24 C 1.47028 * 125.64994 * 178.26509 * 10 8 7 25 25 H 1.09003 * 109.88018 * 300.44371 * 24 10 8 26 26 C 1.52997 * 109.88021 * 61.45285 * 24 10 8 27 27 H 1.09006 * 109.46894 * 270.13514 * 1 2 3 28 28 H 1.08996 * 109.47142 * 30.13824 * 1 2 3 29 29 H 1.09000 * 109.47019 * 150.14289 * 1 2 3 30 30 H 1.08003 * 126.06438 * 0.06129 * 3 2 1 31 31 H 1.07998 * 125.56564 * 179.78018 * 4 3 2 32 32 H 1.09000 * 110.36419 * 37.06900 * 11 10 8 33 33 H 1.08994 * 110.36934 * 274.74117 * 11 10 8 34 34 H 0.97003 * 120.00272 * 266.18766 * 14 12 11 35 35 H 0.96998 * 120.00541 * 180.02562 * 18 17 15 36 36 H 1.08996 * 110.72052 * 82.86088 * 23 12 11 37 37 H 1.09003 * 110.71848 * 206.12806 * 23 12 11 38 38 H 1.08997 * 109.47032 * 58.54675 * 26 24 10 39 39 H 1.08999 * 109.47393 * 178.54917 * 26 24 10 40 40 H 1.09003 * 109.47424 * 298.55011 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0069 5 7 3.6285 -0.6624 -0.0053 6 1 4.4191 -1.2243 -0.0088 7 6 2.3263 -1.1089 0.0022 8 6 1.8899 -2.5092 0.0067 9 8 0.7102 -2.7793 -0.1208 10 7 2.7954 -3.4968 0.1520 11 6 4.2530 -3.3144 0.2781 12 6 4.7488 -4.5823 1.0171 13 1 4.5921 -4.4944 2.0922 14 7 6.1571 -4.8494 0.7148 15 6 7.1417 -4.2497 1.4538 16 1 6.8800 -3.5802 2.2599 17 6 8.4762 -4.5023 1.1670 18 7 8.7953 -5.3178 0.1844 19 14 9.8192 -3.6848 2.1756 20 1 10.1625 -4.5476 3.3346 21 1 11.0241 -3.4897 1.3298 22 1 9.3389 -2.3674 2.6643 23 6 3.8322 -5.6762 0.4082 24 6 2.4935 -4.9345 0.2102 25 1 1.8283 -5.1399 1.0490 26 6 1.8357 -5.3814 -1.0969 27 1 -0.3633 0.0024 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 2.0136 2.1549 0.0009 31 1 4.4972 1.3253 -0.0120 32 1 4.4743 -2.4226 0.8645 33 1 4.7133 -3.2453 -0.7074 34 1 6.3922 -5.4539 -0.0065 35 1 9.7277 -5.4946 -0.0159 36 1 4.2266 -6.0218 -0.5473 37 1 3.7129 -6.5090 1.1013 38 1 2.5028 -5.1659 -1.9315 39 1 1.6383 -6.4526 -1.0567 40 1 0.8973 -4.8439 -1.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988748649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = 11.622017 kcal Electronic energy + Delta-G solvation = -21924.069891 eV Core-core repulsion = 18739.248269 eV Total energy + Delta-G solvation = -3184.821622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44337 -40.70258 -38.71869 -36.04958 -33.88091 -33.25769 -32.84549 -30.34116 -30.12810 -28.00178 -26.74495 -25.85763 -24.05442 -22.21836 -21.90684 -21.06693 -19.91682 -19.27288 -18.46748 -17.71903 -17.11355 -16.40757 -16.22752 -15.64266 -15.42576 -15.02210 -14.86473 -14.58195 -14.48594 -14.09314 -13.89175 -13.77602 -13.56297 -13.48036 -13.17705 -13.06366 -12.88979 -12.82833 -12.52321 -12.38619 -12.11360 -12.07279 -11.78441 -11.55625 -11.08488 -10.89510 -9.86551 -9.68778 -9.13848 -9.06624 -7.97813 -5.28705 0.46737 1.49084 1.50449 1.57837 1.81646 1.83831 2.26749 2.33167 2.54287 3.32569 3.36863 3.68900 3.82202 3.89552 4.10181 4.16921 4.23692 4.24644 4.35989 4.42873 4.45954 4.52608 4.68262 4.76765 4.88044 4.91429 4.96396 5.01887 5.04311 5.17204 5.21158 5.31789 5.38144 5.45449 5.51178 5.82239 6.02718 6.22538 6.41838 6.49412 7.06736 7.31153 8.00449 8.25722 9.24644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005349 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.280126 B = 5233.808433 C = 6595.209789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.092 4.092 3 C -0.222 4.222 4 C 0.032 3.968 5 N -0.544 5.544 6 H 0.423 0.577 7 C -0.091 4.091 8 C 0.597 3.403 9 O -0.562 6.562 10 N -0.611 5.611 11 C 0.076 3.924 12 C 0.169 3.831 13 H 0.064 0.936 14 N -0.721 5.721 15 C -0.248 4.248 16 H 0.079 0.921 17 C -0.063 4.063 18 N -0.964 5.964 19 Si 0.967 3.033 20 H -0.290 1.290 21 H -0.298 1.298 22 H -0.267 1.267 23 C -0.123 4.123 24 C 0.139 3.861 25 H 0.079 0.921 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.166 0.834 31 H 0.205 0.795 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 8.613 -0.596 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.246 4.246 4 C -0.105 4.105 5 N -0.146 5.146 6 H 0.268 0.732 7 C -0.203 4.203 8 C 0.389 3.611 9 O -0.442 6.442 10 N -0.344 5.344 11 C -0.050 4.050 12 C 0.058 3.942 13 H 0.082 0.918 14 N -0.360 5.360 15 C -0.379 4.379 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.613 5.613 19 Si 0.797 3.203 20 H -0.217 1.217 21 H -0.225 1.225 22 H -0.192 1.192 23 C -0.162 4.162 24 C 0.036 3.964 25 H 0.097 0.903 26 C -0.210 4.210 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.221 0.779 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.615 8.446 -0.542 15.191 hybrid contribution 1.583 -0.215 0.103 1.601 sum -11.032 8.231 -0.439 13.771 Atomic orbital electron populations 1.20310 0.88927 1.02859 1.02163 1.20295 0.96503 0.91291 1.02036 1.21101 0.91635 0.99256 1.12570 1.22759 1.00810 0.82916 1.04009 1.43030 1.07269 1.08329 1.55949 0.73152 1.20194 0.85043 0.93070 1.21990 1.16999 0.84634 0.83246 0.76254 1.90721 1.16974 1.83543 1.52943 1.48544 1.07275 1.06940 1.71647 1.23381 0.79006 1.01852 1.00799 1.21389 0.83945 0.91878 0.97004 0.91812 1.42419 0.99680 1.54323 1.39570 1.19587 0.86752 1.20837 1.10732 0.90289 1.25480 0.99363 1.00921 0.99885 1.69793 1.17227 1.41090 1.33227 0.85242 0.78955 0.78519 0.77619 1.21737 1.22472 1.19183 1.22921 0.92768 0.98021 1.02441 1.21618 0.96888 0.78835 0.99086 0.90318 1.22057 1.00520 1.02495 0.95974 0.91517 0.89925 0.92157 0.81607 0.77864 0.91105 0.91729 0.78856 0.93904 0.90318 0.88513 0.93168 0.89449 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.91 71.24 0.71 -1.42 16 2 C -0.09 -2.56 6.21 -19.56 -0.12 -2.68 16 3 C -0.22 -4.95 10.76 22.01 0.24 -4.71 16 4 C 0.03 0.68 11.89 83.48 0.99 1.67 16 5 N -0.54 -14.36 5.39 -183.62 -0.99 -15.35 16 6 H 0.42 11.02 5.19 -92.71 -0.48 10.54 16 7 C -0.09 -2.81 6.85 40.35 0.28 -2.53 16 8 C 0.60 20.34 7.62 86.45 0.66 21.00 16 9 O -0.56 -21.10 13.74 -4.33 -0.06 -21.16 16 10 N -0.61 -19.23 3.07 -792.71 -2.43 -21.66 16 11 C 0.08 2.44 5.16 86.85 0.45 2.89 16 12 C 0.17 5.91 3.69 46.39 0.17 6.08 16 13 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 14 N -0.72 -32.19 5.28 -316.36 -1.67 -33.86 16 15 C -0.25 -12.35 9.98 84.03 0.84 -11.51 16 16 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 17 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 18 N -0.96 -54.91 13.06 21.65 0.28 -54.62 16 19 Si 0.97 42.78 29.55 68.60 2.03 44.81 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 C -0.12 -3.56 6.10 31.78 0.19 -3.37 16 24 C 0.14 3.94 3.46 45.34 0.16 4.10 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 C -0.15 -4.02 9.11 71.98 0.66 -3.37 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.76 6.37 -2.39 -0.02 1.74 16 30 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.07 2.20 5.51 -2.39 -0.01 2.19 16 33 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.38 18.33 7.71 -92.71 -0.71 17.61 16 35 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.08 2.33 7.71 -2.39 -0.02 2.31 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.60 6.81 -2.39 -0.02 1.58 16 Total: -1.00 -62.66 324.31 2.71 -59.95 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.13 Total: 38.61 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.68 Total: 3.27 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -4.81 Total: -125.49 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -62.66 2.71 -59.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988748649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.577 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds