Wall clock time and date at job start Mon Mar 30 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34485 * 126.83757 * 2 1 4 4 N 1.36445 * 108.85729 * 179.73961 * 3 2 1 5 5 H 0.97004 * 124.84657 * 180.02562 * 4 3 2 6 6 C 1.34651 * 110.30141 * 0.02562 * 4 3 2 7 7 C 1.36774 * 108.39560 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.93940 * 180.02562 * 7 6 4 9 9 O 1.21635 * 119.99785 * 186.90619 * 8 7 6 10 10 N 1.34772 * 120.00232 * 6.90823 * 8 7 6 11 11 C 1.48214 * 119.97315 * 185.31488 * 10 8 7 12 12 C 1.47140 * 110.34766 * 102.45824 * 11 10 8 13 13 C 1.53798 * 111.83577 * 58.29990 * 12 11 10 14 14 N 1.43469 * 107.96121 * 281.67036 * 13 12 11 15 15 C 1.36934 * 118.93927 * 273.62961 * 14 13 12 16 16 H 1.08003 * 119.99855 * 140.80303 * 15 14 13 17 17 C 1.38814 * 120.00308 * 320.80141 * 15 14 13 18 18 N 1.31620 * 119.99853 * 158.45189 * 17 15 14 19 19 Si 1.86799 * 119.99822 * 338.44865 * 17 15 14 20 20 H 1.48503 * 109.46927 * 95.28912 * 19 17 15 21 21 H 1.48494 * 109.47362 * 215.29023 * 19 17 15 22 22 H 1.48499 * 109.47351 * 335.29179 * 19 17 15 23 23 C 1.48861 * 122.11622 * 93.65476 * 14 13 12 24 24 C 1.43616 * 119.97172 * 5.03544 * 10 8 7 25 25 H 1.09003 * 109.47259 * 90.02257 * 1 2 3 26 26 H 1.08997 * 109.47306 * 210.01824 * 1 2 3 27 27 H 1.09005 * 109.46878 * 330.02183 * 1 2 3 28 28 H 1.07999 * 125.56841 * 359.74543 * 3 2 1 29 29 H 1.07999 * 125.80184 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.32886 * 222.73188 * 11 10 8 31 31 H 1.09004 * 109.32013 * 342.36851 * 11 10 8 32 32 H 1.09000 * 109.00467 * 178.90707 * 12 11 10 33 33 H 1.08997 * 109.00559 * 297.76781 * 12 11 10 34 34 H 1.08997 * 109.76501 * 41.29056 * 13 12 11 35 35 H 1.08999 * 109.76309 * 162.00586 * 13 12 11 36 36 H 0.97002 * 119.99475 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47998 * 80.58161 * 23 14 13 38 38 H 1.09000 * 109.47407 * 200.60951 * 23 14 13 39 39 H 1.08993 * 108.87560 * 31.47112 * 24 10 8 40 40 H 1.09005 * 108.87799 * 149.91209 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 0.0059 5 1 4.3840 1.2413 0.0074 6 6 3.6656 -0.6903 0.0092 7 6 2.3863 -1.1741 0.0049 8 6 1.9749 -2.5881 0.0069 9 8 0.8015 -2.8802 -0.1241 10 7 2.8985 -3.5585 0.1539 11 6 2.5020 -4.9819 0.0382 12 6 2.8968 -5.5179 -1.2739 13 6 4.4117 -5.3956 -1.5095 14 7 4.6941 -4.0377 -1.8765 15 6 4.5941 -3.6724 -3.1924 16 1 4.1787 -2.7109 -3.4559 17 6 5.0267 -4.5379 -4.1878 18 7 4.5695 -4.4100 -5.4154 19 14 6.2578 -5.8838 -3.7850 20 1 5.5331 -7.1486 -3.5012 21 1 7.1685 -6.0837 -4.9407 22 1 7.0503 -5.4892 -2.5928 23 6 5.0929 -3.0132 -0.8728 24 6 4.2674 -3.2122 0.4167 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3634 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 1.9868 2.1058 -0.0039 29 1 4.5664 -1.2860 0.0143 30 1 2.9900 -5.5575 0.8247 31 1 1.4207 -5.0651 0.1485 32 1 2.6128 -6.5689 -1.3281 33 1 2.3716 -4.9679 -2.0547 34 1 4.9486 -5.6497 -0.5956 35 1 4.7150 -6.0661 -2.3136 36 1 4.8715 -5.0151 -6.1109 37 1 6.1539 -3.1192 -0.6471 38 1 4.9043 -2.0178 -1.2749 39 1 4.2928 -2.2871 0.9924 40 1 4.7247 -4.0058 1.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989660069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:09 Heat of formation + Delta-G solvation = 74.605877 kcal Electronic energy + Delta-G solvation = -22929.968993 eV Core-core repulsion = 19747.878556 eV Total energy + Delta-G solvation = -3182.090437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18256 -39.21439 -36.99581 -34.40158 -32.99520 -32.19549 -31.52468 -29.29768 -28.09599 -26.26978 -25.72623 -23.75750 -22.88142 -21.24030 -20.09991 -19.51355 -18.40776 -17.49978 -16.62671 -16.21225 -15.70850 -15.23993 -14.80151 -14.48687 -14.00803 -13.86824 -13.16165 -13.11386 -13.02420 -12.76514 -12.63897 -12.45324 -12.22326 -12.05154 -11.84739 -11.57745 -11.25345 -11.00442 -10.88376 -10.64170 -10.40922 -10.06765 -9.76177 -9.57615 -9.23402 -8.51736 -8.39248 -8.03843 -8.01237 -6.76939 -5.97501 -3.40734 2.09071 2.61493 3.30327 3.34279 3.44694 3.48899 3.63122 4.02516 4.51560 4.89061 5.04075 5.08332 5.24548 5.31348 5.42851 5.50939 5.56629 5.61197 5.75697 5.79444 5.91318 5.98153 6.05310 6.08238 6.13967 6.28966 6.35685 6.40166 6.44587 6.50043 6.58598 6.77988 6.99171 7.09641 7.12164 7.27222 7.61443 8.03660 8.11747 8.39852 8.85129 9.04033 9.72675 10.09640 11.18023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.006461 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.370882 B = 4332.947837 C = 4686.031829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.113 4.113 3 C -0.034 4.034 4 N -0.554 5.554 5 H 0.415 0.585 6 C 0.022 3.978 7 C -0.218 4.218 8 C 0.594 3.406 9 O -0.554 6.554 10 N -0.586 5.586 11 C 0.132 3.868 12 C -0.166 4.166 13 C 0.152 3.848 14 N -0.597 5.597 15 C -0.268 4.268 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.286 1.286 21 H -0.303 1.303 22 H -0.272 1.272 23 C 0.109 3.891 24 C 0.075 3.925 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.164 0.836 29 H 0.203 0.797 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 7.372 14.569 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C -0.161 4.161 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.112 4.112 7 C -0.229 4.229 8 C 0.385 3.615 9 O -0.434 6.434 10 N -0.317 5.317 11 C 0.010 3.990 12 C -0.207 4.207 13 C 0.025 3.975 14 N -0.320 5.320 15 C -0.397 4.397 16 H 0.091 0.909 17 C -0.164 4.164 18 N -0.540 5.540 19 Si 0.713 3.287 20 H -0.214 1.214 21 H -0.231 1.231 22 H -0.197 1.197 23 C -0.017 4.017 24 C -0.051 4.051 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.181 0.819 29 H 0.219 0.781 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.459 7.256 14.352 16.089 hybrid contribution 1.271 -0.576 -0.194 1.409 sum 0.812 6.680 14.158 15.676 Atomic orbital electron populations 1.20132 0.89650 1.01876 1.01926 1.20520 0.95455 0.90550 1.05398 1.21492 0.82804 0.98888 1.12908 1.41600 1.08010 1.06956 1.58223 0.74939 1.23635 1.00355 0.83514 1.03722 1.20361 0.92593 0.92891 1.17024 1.17359 0.84901 0.84013 0.75231 1.90678 1.17715 1.83608 1.51357 1.47131 1.07427 1.06273 1.70887 1.20561 1.01009 0.79866 0.97527 1.21737 1.01038 0.99793 0.98151 1.20673 0.92288 0.87176 0.97319 1.43753 1.78978 1.05066 1.04248 1.18759 1.35858 1.05047 0.80015 0.90853 1.25485 0.97772 0.98306 0.94875 1.69879 1.43014 1.39110 1.02048 0.86856 0.82715 0.82014 0.77078 1.21411 1.23121 1.19659 1.22404 0.95198 0.94627 0.89467 1.22160 0.83220 1.01471 0.98288 0.91858 0.90714 0.92829 0.81878 0.78093 0.92277 0.90022 0.92498 0.90218 0.94589 0.93244 0.92760 0.94713 0.91312 0.89802 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.93 36.00 0.36 -0.78 16 2 C -0.11 -1.76 6.35 -102.54 -0.65 -2.41 16 3 C -0.03 -0.41 11.82 -16.83 -0.20 -0.61 16 4 N -0.55 -6.18 5.90 -12.85 -0.08 -6.26 16 5 H 0.41 3.02 8.96 -40.82 -0.37 2.65 16 6 C 0.02 0.31 8.68 -16.84 -0.15 0.17 16 7 C -0.22 -3.80 6.10 -103.35 -0.63 -4.43 16 8 C 0.59 11.81 7.65 -12.59 -0.10 11.71 16 9 O -0.55 -12.50 14.84 5.25 0.08 -12.42 16 10 N -0.59 -10.50 2.47 -178.30 -0.44 -10.94 16 11 C 0.13 2.29 5.73 -5.91 -0.03 2.26 16 12 C -0.17 -3.32 5.64 -29.13 -0.16 -3.48 16 13 C 0.15 3.24 4.55 -5.23 -0.02 3.22 16 14 N -0.60 -13.67 2.10 -172.29 -0.36 -14.03 16 15 C -0.27 -7.43 9.55 -15.06 -0.14 -7.58 16 16 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 17 C 0.04 1.04 5.29 -17.43 -0.09 0.95 16 18 N -0.90 -27.65 13.97 55.49 0.78 -26.88 16 19 Si 0.88 22.07 25.06 -169.99 -4.26 17.82 16 20 H -0.29 -6.99 6.70 56.52 0.38 -6.61 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 1.95 5.97 -2.00 -0.01 1.94 16 24 C 0.07 1.12 4.66 -4.84 -0.02 1.10 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.21 7.00 -51.93 -0.36 0.85 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.20 2.54 2.90 -52.49 -0.15 2.38 16 30 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.08 1.47 7.08 -51.93 -0.37 1.10 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.93 7.91 -51.93 -0.41 1.52 16 34 H 0.04 0.67 7.58 -51.93 -0.39 0.27 16 35 H 0.05 1.17 3.13 -51.93 -0.16 1.01 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.24 5.42 -51.93 -0.28 0.96 16 39 H 0.08 1.05 4.73 -51.93 -0.25 0.80 16 40 H 0.07 0.92 7.73 -51.93 -0.40 0.51 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -35.26 304.69 -6.81 -42.06 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.26 Total: 4.01 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.86 Total: 2.05 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.10 Total: -58.11 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.26 Total: 17.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.26 -6.81 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989660069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.671 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds