Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34490 * 126.83094 * 2 1 4 4 N 1.36440 * 108.85251 * 180.02562 * 3 2 1 5 5 H 0.97002 * 124.84806 * 180.02562 * 4 3 2 6 6 C 1.34656 * 110.30392 * 359.72344 * 4 3 2 7 7 C 1.36777 * 108.39169 * 0.44730 * 6 4 3 8 8 C 1.47258 * 126.94071 * 179.83149 * 7 6 4 9 9 O 1.21625 * 120.00280 * 172.98706 * 8 7 6 10 10 N 1.34785 * 120.00210 * 352.99026 * 8 7 6 11 11 C 1.47423 * 125.64484 * 354.35222 * 10 8 7 12 12 C 1.54916 * 104.82947 * 204.15026 * 11 10 8 13 13 H 1.09007 * 111.00251 * 204.91510 * 12 11 10 14 14 N 1.46497 * 111.03539 * 81.08027 * 12 11 10 15 15 C 1.36933 * 119.99952 * 89.60904 * 14 12 11 16 16 H 1.07994 * 120.00120 * 359.97438 * 15 14 12 17 17 C 1.38820 * 120.00056 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47047 * 60.00246 * 19 17 15 21 21 H 1.48503 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47410 * 300.00111 * 19 17 15 23 23 C 1.55155 * 101.57976 * 322.98630 * 12 11 10 24 24 C 1.47014 * 125.65113 * 174.37362 * 10 8 7 25 25 H 1.09005 * 110.01086 * 59.42855 * 24 10 8 26 26 C 1.52995 * 109.88534 * 298.34137 * 24 10 8 27 27 H 1.09003 * 109.46790 * 269.95522 * 1 2 3 28 28 H 1.08992 * 109.47454 * 29.95906 * 1 2 3 29 29 H 1.08996 * 109.46616 * 149.96039 * 1 2 3 30 30 H 1.07997 * 125.57261 * 0.02562 * 3 2 1 31 31 H 1.08000 * 125.80754 * 180.29966 * 6 4 3 32 32 H 1.08998 * 110.37111 * 85.31018 * 11 10 8 33 33 H 1.08998 * 110.36676 * 322.98616 * 11 10 8 34 34 H 0.96998 * 119.99792 * 269.59864 * 14 12 11 35 35 H 0.96992 * 119.99876 * 180.02562 * 18 17 15 36 36 H 1.09008 * 110.71680 * 153.86354 * 23 12 11 37 37 H 1.08993 * 110.72425 * 276.96549 * 23 12 11 38 38 H 1.09007 * 109.46946 * 302.18664 * 26 24 10 39 39 H 1.09001 * 109.47504 * 62.18540 * 26 24 10 40 40 H 1.09000 * 109.47607 * 182.19305 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0003 6 6 3.6657 -0.6901 0.0051 7 6 2.3864 -1.1740 -0.0005 8 6 1.9750 -2.5879 -0.0008 9 8 0.8007 -2.8797 0.1224 10 7 2.8998 -3.5589 -0.1375 11 6 4.3330 -3.3479 -0.4113 12 6 4.8077 -4.6645 -1.0755 13 1 5.8779 -4.8118 -0.9297 14 7 4.4666 -4.6876 -2.5000 15 6 5.3452 -4.1856 -3.4226 16 1 6.2893 -3.7723 -3.1001 17 6 5.0222 -4.2080 -4.7725 18 7 3.8716 -4.7122 -5.1656 19 14 6.2203 -3.5226 -6.0311 20 1 7.4999 -4.2725 -5.9560 21 1 5.6433 -3.6642 -7.3921 22 1 6.4704 -2.0869 -5.7459 23 6 3.9886 -5.7226 -0.2901 24 6 2.6464 -5.0037 -0.0387 25 1 1.9171 -5.3067 -0.7900 26 6 2.1263 -5.3464 1.3587 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8903 -0.5131 29 1 -0.3632 -0.8896 -0.5144 30 1 1.9868 2.1059 0.0004 31 1 4.5665 -1.2859 0.0106 32 1 4.8754 -3.1749 0.5182 33 1 4.4694 -2.5085 -1.0930 34 1 3.6185 -5.0586 -2.7896 35 1 3.6461 -4.7282 -6.1088 36 1 3.8391 -6.6191 -0.8919 37 1 4.4793 -5.9692 0.6514 38 1 2.8521 -5.0245 2.1056 39 1 1.1787 -4.8355 1.5292 40 1 1.9777 -6.4234 1.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989794218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = 28.392826 kcal Electronic energy + Delta-G solvation = -22158.760118 eV Core-core repulsion = 18974.665733 eV Total energy + Delta-G solvation = -3184.094385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03428 -39.30226 -36.97475 -33.92276 -32.22865 -31.92140 -31.27594 -29.05510 -28.38205 -26.42160 -25.48397 -23.84683 -23.12448 -20.73694 -20.37366 -19.18811 -18.48305 -17.41075 -17.18381 -16.17944 -15.62047 -14.71674 -14.46702 -14.23400 -13.75084 -13.67924 -13.48080 -13.15874 -13.02434 -12.69601 -12.58965 -12.48181 -12.15141 -12.08529 -11.74608 -11.55614 -11.18646 -11.08859 -10.90776 -10.67465 -10.55866 -10.30172 -9.99448 -9.71316 -9.29923 -8.99746 -8.44473 -8.09436 -8.01141 -7.01401 -5.81043 -3.11377 2.07799 2.58426 3.31671 3.39280 3.43526 3.45936 3.62495 4.01587 4.53384 4.95809 5.06724 5.16559 5.21233 5.34102 5.41844 5.55207 5.59101 5.62361 5.72894 5.75772 5.86256 5.94722 6.01338 6.04773 6.05907 6.21794 6.24530 6.29475 6.45883 6.48899 6.50816 6.65920 6.75441 6.92734 7.07287 7.08729 7.57960 7.62691 8.17729 8.36190 8.85546 9.47644 10.04240 10.38643 11.40886 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.006377 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980181 B = 4389.997711 C = 5494.404937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.112 4.112 3 C -0.033 4.033 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.041 3.959 7 C -0.217 4.217 8 C 0.604 3.396 9 O -0.555 6.555 10 N -0.598 5.598 11 C 0.062 3.938 12 C 0.168 3.832 13 H 0.071 0.929 14 N -0.710 5.710 15 C -0.248 4.248 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.927 5.927 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.138 4.138 24 C 0.141 3.859 25 H 0.073 0.927 26 C -0.158 4.158 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.183 0.817 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 7.625 13.628 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C -0.160 4.160 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.095 4.095 7 C -0.227 4.227 8 C 0.395 3.605 9 O -0.435 6.435 10 N -0.330 5.330 11 C -0.064 4.064 12 C 0.056 3.944 13 H 0.089 0.911 14 N -0.350 5.350 15 C -0.379 4.379 16 H 0.089 0.911 17 C -0.205 4.205 18 N -0.574 5.574 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.177 4.177 24 C 0.037 3.963 25 H 0.091 0.909 26 C -0.216 4.216 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.199 0.801 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.187 7.678 13.552 15.577 hybrid contribution 0.851 0.667 -0.952 1.441 sum 1.038 8.345 12.600 15.148 Atomic orbital electron populations 1.20137 0.89573 1.02344 1.01555 1.20523 0.95499 0.90472 1.05406 1.21492 0.82679 0.98930 1.12945 1.41517 1.08068 1.06839 1.58347 0.74935 1.22711 0.99500 0.83502 1.03748 1.20341 0.92591 0.92789 1.16972 1.16982 0.84257 0.83428 0.75826 1.90683 1.17161 1.83521 1.52145 1.48174 1.08922 1.05645 1.70270 1.23617 0.80938 1.03476 0.98412 1.21343 0.96921 0.90464 0.85713 0.91122 1.42315 1.21367 1.72489 0.98842 1.19154 0.98346 1.33247 0.87193 0.91115 1.24767 0.97157 1.01427 0.97130 1.69657 1.22088 1.50274 1.15345 0.86289 0.80245 0.78676 0.81032 1.21186 1.21677 1.21354 1.23049 0.94944 0.99232 1.00486 1.21405 0.97582 0.80365 0.96921 0.90902 1.22120 1.01873 1.01142 0.96478 0.92119 0.92694 0.90472 0.81789 0.80067 0.92958 0.89756 0.77940 0.93315 0.89891 0.90836 0.92987 0.91750 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.93 36.01 0.36 -0.78 16 2 C -0.11 -1.76 6.35 -102.54 -0.65 -2.41 16 3 C -0.03 -0.41 11.82 -16.83 -0.20 -0.61 16 4 N -0.55 -6.25 5.90 -12.85 -0.08 -6.32 16 5 H 0.41 3.07 8.96 -40.82 -0.37 2.71 16 6 C 0.04 0.58 10.23 -16.84 -0.17 0.41 16 7 C -0.22 -3.79 6.22 -103.35 -0.64 -4.43 16 8 C 0.60 12.00 7.58 -12.59 -0.10 11.90 16 9 O -0.56 -12.31 14.69 5.26 0.08 -12.24 16 10 N -0.60 -10.87 3.06 -164.34 -0.50 -11.38 16 11 C 0.06 1.03 4.81 -2.53 -0.01 1.02 16 12 C 0.17 3.07 3.70 -65.78 -0.24 2.83 16 13 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 14 N -0.71 -17.02 5.25 -51.35 -0.27 -17.29 16 15 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 19 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.14 -2.16 6.06 -24.90 -0.15 -2.31 16 24 C 0.14 2.40 3.42 -66.96 -0.23 2.17 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 C -0.16 -2.32 9.10 37.16 0.34 -1.98 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 30 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.18 2.27 4.83 -52.49 -0.25 2.02 16 32 H 0.05 0.71 7.75 -51.93 -0.40 0.30 16 33 H 0.08 1.53 5.96 -51.93 -0.31 1.22 16 34 H 0.39 10.25 7.84 -40.82 -0.32 9.93 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 36 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 38 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 1.07 7.10 -51.93 -0.37 0.70 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -33.55 325.99 -7.82 -41.37 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.72 Total: 12.42 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.95 Total: -1.23 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.12 Total: -62.08 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.55 -7.82 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.760 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds