Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34490 * 126.83094 * 2 1 4 4 N 1.36440 * 108.85251 * 180.02562 * 3 2 1 5 5 H 0.97002 * 124.84806 * 180.02562 * 4 3 2 6 6 C 1.34656 * 110.30392 * 359.72344 * 4 3 2 7 7 C 1.36777 * 108.39169 * 0.44730 * 6 4 3 8 8 C 1.47258 * 126.94071 * 179.83149 * 7 6 4 9 9 O 1.21625 * 120.00280 * 172.98706 * 8 7 6 10 10 N 1.34785 * 120.00210 * 352.99026 * 8 7 6 11 11 C 1.47423 * 125.64484 * 354.35222 * 10 8 7 12 12 C 1.54916 * 104.82947 * 204.15026 * 11 10 8 13 13 H 1.09007 * 111.00251 * 204.91510 * 12 11 10 14 14 N 1.46497 * 111.03539 * 81.08027 * 12 11 10 15 15 C 1.36933 * 119.99952 * 89.60904 * 14 12 11 16 16 H 1.07994 * 120.00120 * 359.97438 * 15 14 12 17 17 C 1.38820 * 120.00056 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47047 * 60.00246 * 19 17 15 21 21 H 1.48503 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47410 * 300.00111 * 19 17 15 23 23 C 1.55155 * 101.57976 * 322.98630 * 12 11 10 24 24 C 1.47014 * 125.65113 * 174.37362 * 10 8 7 25 25 H 1.09005 * 110.01086 * 59.42855 * 24 10 8 26 26 C 1.52995 * 109.88534 * 298.34137 * 24 10 8 27 27 H 1.09003 * 109.46790 * 269.95522 * 1 2 3 28 28 H 1.08992 * 109.47454 * 29.95906 * 1 2 3 29 29 H 1.08996 * 109.46616 * 149.96039 * 1 2 3 30 30 H 1.07997 * 125.57261 * 0.02562 * 3 2 1 31 31 H 1.08000 * 125.80754 * 180.29966 * 6 4 3 32 32 H 1.08998 * 110.37111 * 85.31018 * 11 10 8 33 33 H 1.08998 * 110.36676 * 322.98616 * 11 10 8 34 34 H 0.96998 * 119.99792 * 269.59864 * 14 12 11 35 35 H 0.96992 * 119.99876 * 180.02562 * 18 17 15 36 36 H 1.09008 * 110.71680 * 153.86354 * 23 12 11 37 37 H 1.08993 * 110.72425 * 276.96549 * 23 12 11 38 38 H 1.09007 * 109.46946 * 302.18664 * 26 24 10 39 39 H 1.09001 * 109.47504 * 62.18540 * 26 24 10 40 40 H 1.09000 * 109.47607 * 182.19305 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0765 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2415 -0.0003 6 6 3.6657 -0.6901 0.0051 7 6 2.3864 -1.1740 -0.0005 8 6 1.9750 -2.5879 -0.0008 9 8 0.8007 -2.8797 0.1224 10 7 2.8998 -3.5589 -0.1375 11 6 4.3330 -3.3479 -0.4113 12 6 4.8077 -4.6645 -1.0755 13 1 5.8779 -4.8118 -0.9297 14 7 4.4666 -4.6876 -2.5000 15 6 5.3452 -4.1856 -3.4226 16 1 6.2893 -3.7723 -3.1001 17 6 5.0222 -4.2080 -4.7725 18 7 3.8716 -4.7122 -5.1656 19 14 6.2203 -3.5226 -6.0311 20 1 7.4999 -4.2725 -5.9560 21 1 5.6433 -3.6642 -7.3921 22 1 6.4704 -2.0869 -5.7459 23 6 3.9886 -5.7226 -0.2901 24 6 2.6464 -5.0037 -0.0387 25 1 1.9171 -5.3067 -0.7900 26 6 2.1263 -5.3464 1.3587 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8903 -0.5131 29 1 -0.3632 -0.8896 -0.5144 30 1 1.9868 2.1059 0.0004 31 1 4.5665 -1.2859 0.0106 32 1 4.8754 -3.1749 0.5182 33 1 4.4694 -2.5085 -1.0930 34 1 3.6185 -5.0586 -2.7896 35 1 3.6461 -4.7282 -6.1088 36 1 3.8391 -6.6191 -0.8919 37 1 4.4793 -5.9692 0.6514 38 1 2.8521 -5.0245 2.1056 39 1 1.1787 -4.8355 1.5292 40 1 1.9777 -6.4234 1.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989794218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = 5.022770 kcal Electronic energy + Delta-G solvation = -22159.773520 eV Core-core repulsion = 18974.665733 eV Total energy + Delta-G solvation = -3185.107787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14096 -40.66512 -38.48802 -35.75046 -33.33945 -33.29991 -33.00407 -30.26657 -30.03477 -27.52339 -26.77016 -25.73066 -24.52699 -22.01501 -21.71250 -20.44099 -19.65173 -19.22097 -18.50300 -17.60560 -17.05499 -16.37147 -15.91552 -15.58462 -15.31640 -15.03236 -14.97958 -14.57041 -14.17640 -14.06492 -13.92811 -13.58037 -13.44462 -13.30141 -13.11717 -13.06958 -12.81158 -12.66145 -12.33587 -12.24775 -12.17778 -11.93715 -11.61434 -11.45585 -10.98171 -10.72899 -9.71416 -9.40026 -9.14204 -8.92943 -7.90958 -5.19953 0.85120 1.48247 1.51148 1.52337 1.57152 2.14542 2.51714 2.57872 2.64791 3.40351 3.65629 3.89942 3.97127 4.00391 4.13690 4.19463 4.27069 4.41505 4.49082 4.52887 4.65881 4.71945 4.78531 4.80120 4.90043 4.95116 4.96326 5.11234 5.15595 5.21044 5.27081 5.34125 5.39280 5.56692 5.64396 5.87986 5.99960 6.29308 6.73412 6.76701 7.35343 7.41168 8.11549 8.33806 9.32735 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.006377 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980181 B = 4389.997711 C = 5494.404937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.157 4.157 3 C -0.007 4.007 4 N -0.534 5.534 5 H 0.437 0.563 6 C 0.053 3.947 7 C -0.265 4.265 8 C 0.589 3.411 9 O -0.597 6.597 10 N -0.601 5.601 11 C 0.071 3.929 12 C 0.156 3.844 13 H 0.093 0.907 14 N -0.727 5.727 15 C -0.234 4.234 16 H 0.089 0.911 17 C -0.080 4.080 18 N -0.974 5.974 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.305 1.305 22 H -0.277 1.277 23 C -0.122 4.122 24 C 0.134 3.866 25 H 0.032 0.968 26 C -0.145 4.145 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.206 0.794 31 H 0.199 0.801 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.536 9.464 15.443 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.163 4.163 3 C -0.135 4.135 4 N -0.130 5.130 5 H 0.277 0.723 6 C -0.084 4.084 7 C -0.276 4.276 8 C 0.382 3.618 9 O -0.480 6.480 10 N -0.333 5.333 11 C -0.054 4.054 12 C 0.046 3.954 13 H 0.110 0.890 14 N -0.364 5.364 15 C -0.365 4.365 16 H 0.107 0.893 17 C -0.272 4.272 18 N -0.625 5.625 19 Si 0.801 3.199 20 H -0.199 1.199 21 H -0.232 1.232 22 H -0.204 1.204 23 C -0.160 4.160 24 C 0.030 3.970 25 H 0.051 0.949 26 C -0.203 4.203 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.223 0.777 31 H 0.215 0.785 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.157 9.548 15.431 18.419 hybrid contribution -0.029 0.119 -1.418 1.423 sum 3.128 9.666 14.013 17.309 Atomic orbital electron populations 1.20048 0.89763 1.01616 1.01580 1.20833 0.96123 0.91254 1.08065 1.22006 0.82262 0.99769 1.09492 1.41554 1.08837 1.06195 1.56390 0.72254 1.22806 0.98675 0.84756 1.02212 1.20461 0.94797 0.91984 1.20316 1.17565 0.84001 0.84867 0.75356 1.90640 1.18821 1.84334 1.54244 1.48302 1.09496 1.05769 1.69719 1.23578 0.80286 1.01612 0.99971 1.21706 0.98454 0.92231 0.83049 0.88964 1.42554 1.20267 1.72404 1.01220 1.19669 0.98687 1.30608 0.87569 0.89312 1.25589 0.98871 1.03260 0.99445 1.69850 1.24525 1.53312 1.14796 0.85244 0.78404 0.78433 0.77859 1.19912 1.23236 1.20354 1.22982 0.93557 0.97764 1.01733 1.21484 0.97795 0.80360 0.97315 0.94948 1.22001 1.00853 1.02272 0.95163 0.91782 0.90096 0.94375 0.77681 0.78453 0.88397 0.91206 0.80144 0.94430 0.90811 0.86670 0.91001 0.94424 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 9.93 71.24 0.71 -1.45 16 2 C -0.16 -4.81 6.35 -18.51 -0.12 -4.92 16 3 C -0.01 -0.15 11.82 83.12 0.98 0.83 16 4 N -0.53 -10.10 5.90 -194.56 -1.15 -11.25 16 5 H 0.44 4.45 8.96 -92.71 -0.83 3.62 16 6 C 0.05 1.37 10.23 83.92 0.86 2.23 16 7 C -0.27 -9.22 6.22 -19.04 -0.12 -9.34 16 8 C 0.59 24.21 7.58 86.61 0.66 24.86 16 9 O -0.60 -28.35 14.69 -4.11 -0.06 -28.41 16 10 N -0.60 -21.86 3.06 -792.08 -2.43 -24.29 16 11 C 0.07 2.19 4.81 86.86 0.42 2.60 16 12 C 0.16 5.36 3.70 46.39 0.17 5.53 16 13 H 0.09 2.83 8.11 -2.38 -0.02 2.82 16 14 N -0.73 -34.76 5.25 -316.37 -1.66 -36.42 16 15 C -0.23 -12.17 9.97 84.04 0.84 -11.34 16 16 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 18 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 19 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 C -0.12 -3.58 6.06 31.78 0.19 -3.39 16 24 C 0.13 4.60 3.42 45.34 0.16 4.76 16 25 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 26 C -0.14 -4.15 9.10 71.98 0.66 -3.49 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.40 7.00 -2.39 -0.02 1.38 16 30 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.20 4.29 4.83 -2.91 -0.01 4.28 16 32 H 0.10 2.20 7.75 -2.39 -0.02 2.18 16 33 H 0.07 2.39 5.96 -2.39 -0.01 2.38 16 34 H 0.37 20.17 7.84 -92.71 -0.73 19.44 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.12 2.47 7.86 -2.39 -0.02 2.45 16 38 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.04 1.28 7.10 -2.39 -0.02 1.26 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -78.07 325.99 2.39 -75.68 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.49 Total: 34.87 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.87 Total: 2.87 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -4.95 Total: -132.16 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.07 2.39 -75.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.703 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds