Wall clock time and date at job start Mon Mar 30 2020 02:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34487 * 126.83274 * 2 1 4 4 N 1.36452 * 108.85894 * 180.02562 * 3 2 1 5 5 H 0.96999 * 124.85630 * 180.02562 * 4 3 2 6 6 C 1.34659 * 110.29365 * 359.75325 * 4 3 2 7 7 C 1.36767 * 108.39755 * 0.40618 * 6 4 3 8 8 C 1.47272 * 126.94201 * 179.87401 * 7 6 4 9 9 O 1.21631 * 119.99722 * 214.12413 * 8 7 6 10 10 N 1.34777 * 120.00202 * 34.12290 * 8 7 6 11 11 C 1.47428 * 125.64484 * 355.67460 * 10 8 7 12 12 C 1.54906 * 104.83222 * 155.90625 * 11 10 8 13 13 H 1.09003 * 111.00545 * 155.11643 * 12 11 10 14 14 N 1.46496 * 111.00805 * 278.93806 * 12 11 10 15 15 C 1.36944 * 119.99670 * 273.54554 * 14 12 11 16 16 H 1.08001 * 119.99724 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00050 * 179.72242 * 15 14 12 18 18 N 1.31615 * 119.99876 * 0.27283 * 17 15 14 19 19 Si 1.86794 * 119.99917 * 180.27465 * 17 15 14 20 20 H 1.48503 * 109.47094 * 60.00128 * 19 17 15 21 21 H 1.48503 * 109.47260 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47288 * 300.00065 * 19 17 15 23 23 C 1.55162 * 101.58040 * 37.00693 * 12 11 10 24 24 C 1.47014 * 125.64934 * 175.71477 * 10 8 7 25 25 H 1.08997 * 109.88469 * 300.59301 * 24 10 8 26 26 C 1.52999 * 109.88475 * 61.60672 * 24 10 8 27 27 H 1.08998 * 109.47290 * 269.97681 * 1 2 3 28 28 H 1.09002 * 109.46819 * 29.97256 * 1 2 3 29 29 H 1.09004 * 109.46915 * 149.97594 * 1 2 3 30 30 H 1.08003 * 125.57632 * 0.04350 * 3 2 1 31 31 H 1.08004 * 125.80075 * 180.29191 * 6 4 3 32 32 H 1.09000 * 110.36909 * 37.06804 * 11 10 8 33 33 H 1.08996 * 110.36666 * 274.74283 * 11 10 8 34 34 H 0.96998 * 120.00606 * 93.53880 * 14 12 11 35 35 H 0.97005 * 120.00246 * 180.02562 * 18 17 15 36 36 H 1.09008 * 110.71786 * 82.86270 * 23 12 11 37 37 H 1.09000 * 110.72246 * 206.13238 * 23 12 11 38 38 H 1.09000 * 109.46959 * 58.54024 * 26 24 10 39 39 H 1.08999 * 109.47385 * 178.54316 * 26 24 10 40 40 H 1.09003 * 109.46994 * 298.55201 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3841 1.2414 -0.0003 6 6 3.6657 -0.6901 0.0045 7 6 2.3864 -1.1740 -0.0007 8 6 1.9750 -2.5880 -0.0005 9 8 0.9705 -2.9292 -0.5956 10 7 2.7114 -3.5041 0.6590 11 6 3.9922 -3.2466 1.3422 12 6 4.1030 -4.3626 2.4108 13 1 5.1443 -4.5520 2.6715 14 7 3.3186 -4.0287 3.6022 15 6 3.8737 -3.2675 4.5961 16 1 4.8898 -2.9138 4.5018 17 6 3.1287 -2.9462 5.7224 18 7 1.8906 -3.3776 5.8375 19 14 3.8833 -1.9015 7.0746 20 1 4.2796 -0.5828 6.5185 21 1 2.8888 -1.7020 8.1593 22 1 5.0811 -2.5886 7.6209 23 6 3.4874 -5.5737 1.6613 24 6 2.3710 -4.9257 0.8155 25 1 1.4126 -5.0235 1.3253 26 6 2.3011 -5.5983 -0.5569 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9868 2.1059 0.0007 31 1 4.5665 -1.2859 0.0097 32 1 3.9780 -2.2660 1.8179 33 1 4.8194 -3.3145 0.6357 34 1 2.4062 -4.3466 3.6871 35 1 1.3697 -3.1528 6.6244 36 1 4.2303 -6.0488 1.0205 37 1 3.0693 -6.2919 2.3667 38 1 3.2600 -5.4899 -1.0639 39 1 2.0740 -6.6569 -0.4317 40 1 1.5198 -5.1269 -1.1531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989794220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:17 Heat of formation + Delta-G solvation = 23.140587 kcal Electronic energy + Delta-G solvation = -22227.613376 eV Core-core repulsion = 19043.291236 eV Total energy + Delta-G solvation = -3184.322139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97813 -39.30248 -36.97231 -33.89822 -32.23179 -31.79547 -31.24595 -29.09750 -28.34068 -26.35069 -25.42476 -23.82253 -23.12220 -20.76502 -20.20582 -19.20686 -18.37484 -17.52509 -17.16371 -16.24880 -15.59009 -14.62939 -14.39255 -14.19193 -13.68381 -13.64249 -13.60040 -13.19140 -13.02366 -12.75469 -12.57397 -12.41066 -12.10985 -12.01704 -11.74322 -11.56749 -11.16872 -11.06593 -10.90882 -10.70046 -10.59041 -10.29908 -9.97890 -9.69907 -9.30947 -8.98601 -8.37088 -8.05524 -8.01644 -6.99161 -5.79473 -3.09359 2.16727 2.64439 3.33572 3.40257 3.44510 3.46567 3.54481 3.93416 4.54804 4.97892 5.06275 5.19654 5.24392 5.35498 5.43878 5.57067 5.62230 5.64808 5.75562 5.77536 5.88984 5.96185 6.07560 6.08389 6.09621 6.26271 6.27407 6.33608 6.47861 6.49758 6.53617 6.69382 6.76742 6.94525 7.08468 7.12369 7.61437 7.64574 8.17156 8.37873 8.82964 9.49364 10.05948 10.40425 11.42545 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.007028 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.074229 B = 3983.039132 C = 5201.585561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.113 4.113 3 C -0.029 4.029 4 N -0.554 5.554 5 H 0.414 0.586 6 C 0.043 3.957 7 C -0.210 4.210 8 C 0.606 3.394 9 O -0.556 6.556 10 N -0.595 5.595 11 C 0.068 3.932 12 C 0.168 3.832 13 H 0.068 0.932 14 N -0.711 5.711 15 C -0.246 4.246 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.137 4.137 24 C 0.140 3.860 25 H 0.072 0.928 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 4.265 -12.953 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.156 4.156 4 N -0.148 5.148 5 H 0.250 0.750 6 C -0.092 4.092 7 C -0.220 4.220 8 C 0.396 3.604 9 O -0.435 6.435 10 N -0.328 5.328 11 C -0.058 4.058 12 C 0.055 3.945 13 H 0.086 0.914 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.205 4.205 18 N -0.574 5.574 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.176 4.176 24 C 0.037 3.963 25 H 0.090 0.910 26 C -0.217 4.217 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.573 4.327 -13.152 14.581 hybrid contribution 0.569 0.904 0.950 1.429 sum 5.142 5.231 -12.202 14.237 Atomic orbital electron populations 1.20190 0.89718 1.02425 1.01917 1.20470 0.95417 0.90426 1.05647 1.21465 0.82582 0.98924 1.12668 1.41415 1.08054 1.06654 1.58672 0.74986 1.21993 0.98640 0.83562 1.05044 1.20275 0.92759 0.92751 1.16245 1.17024 0.82099 0.83552 0.77723 1.90680 1.26607 1.81115 1.45126 1.48232 1.23217 1.08572 1.52743 1.23445 0.83958 1.03554 0.94889 1.21335 0.95859 0.90442 0.86816 0.91393 1.42303 1.14517 1.61936 1.16309 1.19140 0.97019 1.24811 0.96700 0.91181 1.24746 0.96099 1.01035 0.98613 1.69653 1.08606 1.49535 1.29648 0.86297 0.77949 0.80227 0.81824 1.21383 1.21686 1.21221 1.23034 0.97491 0.98563 0.98512 1.21431 0.98880 0.80441 0.95542 0.90981 1.22146 1.02193 1.00041 0.97364 0.91861 0.92457 0.90486 0.81755 0.81216 0.89879 0.93253 0.77992 0.93370 0.90813 0.89901 0.93061 0.92263 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.29 36.01 0.37 -0.93 16 2 C -0.11 -1.84 6.35 -102.54 -0.65 -2.49 16 3 C -0.03 -0.37 11.82 -16.82 -0.20 -0.57 16 4 N -0.55 -6.35 5.90 -12.84 -0.08 -6.43 16 5 H 0.41 3.11 8.96 -40.82 -0.37 2.75 16 6 C 0.04 0.60 9.98 -16.84 -0.17 0.43 16 7 C -0.21 -3.70 5.82 -103.35 -0.60 -4.31 16 8 C 0.61 12.00 7.56 -12.59 -0.10 11.91 16 9 O -0.56 -12.22 14.77 5.25 0.08 -12.14 16 10 N -0.60 -10.89 3.06 -164.33 -0.50 -11.39 16 11 C 0.07 1.15 5.06 -2.53 -0.01 1.14 16 12 C 0.17 3.11 3.69 -65.78 -0.24 2.87 16 13 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 14 N -0.71 -17.15 5.27 -51.35 -0.27 -17.42 16 15 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.14 -2.16 6.05 -24.89 -0.15 -2.31 16 24 C 0.14 2.41 3.48 -66.96 -0.23 2.18 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 26 C -0.16 -2.36 9.10 37.16 0.34 -2.02 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.32 6.99 -51.93 -0.36 0.95 16 30 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.17 1.99 6.47 -52.48 -0.34 1.65 16 32 H 0.08 1.57 6.60 -51.93 -0.34 1.23 16 33 H 0.05 0.68 7.73 -51.93 -0.40 0.28 16 34 H 0.39 10.24 7.82 -40.82 -0.32 9.92 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.96 7.85 -51.92 -0.41 0.55 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -33.58 327.96 -7.84 -41.42 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.82 Total: 12.29 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.89 Total: -1.15 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.13 Total: -62.35 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.58 -7.84 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.559 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds