Wall clock time and date at job start Mon Mar 30 2020 02:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34487 * 126.83274 * 2 1 4 4 N 1.36452 * 108.85894 * 180.02562 * 3 2 1 5 5 H 0.96999 * 124.85630 * 180.02562 * 4 3 2 6 6 C 1.34659 * 110.29365 * 359.75325 * 4 3 2 7 7 C 1.36767 * 108.39755 * 0.40618 * 6 4 3 8 8 C 1.47272 * 126.94201 * 179.87401 * 7 6 4 9 9 O 1.21631 * 119.99722 * 214.12413 * 8 7 6 10 10 N 1.34777 * 120.00202 * 34.12290 * 8 7 6 11 11 C 1.47428 * 125.64484 * 355.67460 * 10 8 7 12 12 C 1.54906 * 104.83222 * 155.90625 * 11 10 8 13 13 H 1.09003 * 111.00545 * 155.11643 * 12 11 10 14 14 N 1.46496 * 111.00805 * 278.93806 * 12 11 10 15 15 C 1.36944 * 119.99670 * 273.54554 * 14 12 11 16 16 H 1.08001 * 119.99724 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00050 * 179.72242 * 15 14 12 18 18 N 1.31615 * 119.99876 * 0.27283 * 17 15 14 19 19 Si 1.86794 * 119.99917 * 180.27465 * 17 15 14 20 20 H 1.48503 * 109.47094 * 60.00128 * 19 17 15 21 21 H 1.48503 * 109.47260 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47288 * 300.00065 * 19 17 15 23 23 C 1.55162 * 101.58040 * 37.00693 * 12 11 10 24 24 C 1.47014 * 125.64934 * 175.71477 * 10 8 7 25 25 H 1.08997 * 109.88469 * 300.59301 * 24 10 8 26 26 C 1.52999 * 109.88475 * 61.60672 * 24 10 8 27 27 H 1.08998 * 109.47290 * 269.97681 * 1 2 3 28 28 H 1.09002 * 109.46819 * 29.97256 * 1 2 3 29 29 H 1.09004 * 109.46915 * 149.97594 * 1 2 3 30 30 H 1.08003 * 125.57632 * 0.04350 * 3 2 1 31 31 H 1.08004 * 125.80075 * 180.29191 * 6 4 3 32 32 H 1.09000 * 110.36909 * 37.06804 * 11 10 8 33 33 H 1.08996 * 110.36666 * 274.74283 * 11 10 8 34 34 H 0.96998 * 120.00606 * 93.53880 * 14 12 11 35 35 H 0.97005 * 120.00246 * 180.02562 * 18 17 15 36 36 H 1.09008 * 110.71786 * 82.86270 * 23 12 11 37 37 H 1.09000 * 110.72246 * 206.13238 * 23 12 11 38 38 H 1.09000 * 109.46959 * 58.54024 * 26 24 10 39 39 H 1.08999 * 109.47385 * 178.54316 * 26 24 10 40 40 H 1.09003 * 109.46994 * 298.55201 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3841 1.2414 -0.0003 6 6 3.6657 -0.6901 0.0045 7 6 2.3864 -1.1740 -0.0007 8 6 1.9750 -2.5880 -0.0005 9 8 0.9705 -2.9292 -0.5956 10 7 2.7114 -3.5041 0.6590 11 6 3.9922 -3.2466 1.3422 12 6 4.1030 -4.3626 2.4108 13 1 5.1443 -4.5520 2.6715 14 7 3.3186 -4.0287 3.6022 15 6 3.8737 -3.2675 4.5961 16 1 4.8898 -2.9138 4.5018 17 6 3.1287 -2.9462 5.7224 18 7 1.8906 -3.3776 5.8375 19 14 3.8833 -1.9015 7.0746 20 1 4.2796 -0.5828 6.5185 21 1 2.8888 -1.7020 8.1593 22 1 5.0811 -2.5886 7.6209 23 6 3.4874 -5.5737 1.6613 24 6 2.3710 -4.9257 0.8155 25 1 1.4126 -5.0235 1.3253 26 6 2.3011 -5.5983 -0.5569 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9868 2.1059 0.0007 31 1 4.5665 -1.2859 0.0097 32 1 3.9780 -2.2660 1.8179 33 1 4.8194 -3.3145 0.6357 34 1 2.4062 -4.3466 3.6871 35 1 1.3697 -3.1528 6.6244 36 1 4.2303 -6.0488 1.0205 37 1 3.0693 -6.2919 2.3667 38 1 3.2600 -5.4899 -1.0639 39 1 2.0740 -6.6569 -0.4317 40 1 1.5198 -5.1269 -1.1531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989794220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:17 Heat of formation + Delta-G solvation = -0.159608 kcal Electronic energy + Delta-G solvation = -22228.623748 eV Core-core repulsion = 19043.291236 eV Total energy + Delta-G solvation = -3185.332512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09725 -40.67805 -38.48925 -35.73790 -33.38378 -33.23117 -32.94150 -30.31151 -30.00970 -27.48302 -26.74205 -25.72295 -24.52349 -22.06293 -21.57465 -20.43116 -19.58224 -19.20832 -18.63946 -17.69693 -17.03906 -16.34607 -15.83195 -15.54562 -15.26966 -15.10574 -14.89048 -14.64772 -14.31752 -14.00301 -13.95194 -13.60618 -13.42492 -13.25988 -13.18520 -13.07523 -12.81744 -12.66503 -12.30476 -12.26068 -12.22274 -11.99135 -11.61834 -11.46345 -10.98923 -10.73647 -9.65865 -9.40663 -9.13573 -8.91700 -7.90600 -5.19191 0.95958 1.47639 1.50479 1.52674 1.56427 2.07568 2.45331 2.57969 2.61553 3.40745 3.65688 3.90355 3.97016 4.03872 4.14040 4.18323 4.28776 4.41392 4.50249 4.53091 4.66644 4.73579 4.80516 4.82445 4.85745 4.96321 4.98390 5.09513 5.15468 5.22691 5.28195 5.31821 5.40055 5.56513 5.63840 5.87046 6.01493 6.29810 6.74655 6.76271 7.35820 7.38343 8.12260 8.34299 9.32955 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.007028 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.074229 B = 3983.039132 C = 5201.585561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.162 4.162 3 C -0.006 4.006 4 N -0.535 5.535 5 H 0.437 0.563 6 C 0.059 3.941 7 C -0.261 4.261 8 C 0.593 3.407 9 O -0.595 6.595 10 N -0.599 5.599 11 C 0.077 3.923 12 C 0.155 3.845 13 H 0.088 0.912 14 N -0.726 5.726 15 C -0.233 4.233 16 H 0.086 0.914 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.970 3.030 20 H -0.279 1.279 21 H -0.304 1.304 22 H -0.274 1.274 23 C -0.121 4.121 24 C 0.134 3.866 25 H 0.033 0.967 26 C -0.146 4.146 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.204 0.796 31 H 0.196 0.804 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 5.472 -13.963 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.135 4.135 4 N -0.130 5.130 5 H 0.278 0.722 6 C -0.078 4.078 7 C -0.271 4.271 8 C 0.385 3.615 9 O -0.478 6.478 10 N -0.330 5.330 11 C -0.048 4.048 12 C 0.045 3.955 13 H 0.106 0.894 14 N -0.364 5.364 15 C -0.364 4.364 16 H 0.104 0.896 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.799 3.201 20 H -0.205 1.205 21 H -0.231 1.231 22 H -0.200 1.200 23 C -0.159 4.159 24 C 0.030 3.970 25 H 0.051 0.949 26 C -0.204 4.204 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.212 0.788 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.061 5.548 -14.196 17.242 hybrid contribution -0.437 0.522 1.179 1.362 sum 7.624 6.071 -13.017 16.261 Atomic orbital electron populations 1.20095 0.90179 1.02461 1.00922 1.20781 0.95932 0.91494 1.08590 1.21946 0.82405 0.99657 1.09448 1.41458 1.08656 1.06185 1.56724 0.72249 1.22229 0.98005 0.84661 1.02900 1.20410 0.94991 0.91943 1.19794 1.17552 0.81728 0.84807 0.77376 1.90639 1.28252 1.81907 1.46963 1.48353 1.23618 1.08799 1.52234 1.23381 0.84664 1.01620 0.95108 1.21692 0.96151 0.92136 0.85521 0.89389 1.42534 1.14181 1.61803 1.17932 1.19626 0.97282 1.22978 0.96561 0.89610 1.25557 0.96672 1.03405 1.01433 1.69841 1.10323 1.52083 1.30071 0.85263 0.77007 0.78978 0.78815 1.20502 1.23090 1.19957 1.22972 0.97458 0.97275 0.98196 1.21511 0.97841 0.80697 0.96918 0.94858 1.22022 1.02301 1.00714 0.95384 0.93367 0.89305 0.93512 0.77928 0.78766 0.91757 0.88629 0.80093 0.94432 0.86664 0.90708 0.91069 0.90059 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.52 10.29 71.24 0.73 -1.79 16 2 C -0.16 -5.22 6.35 -18.52 -0.12 -5.34 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.84 16 4 N -0.53 -10.35 5.90 -194.55 -1.15 -11.50 16 5 H 0.44 4.56 8.96 -92.71 -0.83 3.73 16 6 C 0.06 1.51 9.98 83.91 0.84 2.34 16 7 C -0.26 -9.17 5.82 -19.04 -0.11 -9.28 16 8 C 0.59 24.19 7.56 86.62 0.65 24.85 16 9 O -0.59 -27.81 14.77 -4.13 -0.06 -27.87 16 10 N -0.60 -21.77 3.06 -792.08 -2.43 -24.19 16 11 C 0.08 2.45 5.06 86.85 0.44 2.89 16 12 C 0.15 5.41 3.69 46.38 0.17 5.58 16 13 H 0.09 2.78 8.13 -2.39 -0.02 2.76 16 14 N -0.73 -35.00 5.27 -316.37 -1.67 -36.67 16 15 C -0.23 -12.26 9.98 84.03 0.84 -11.42 16 16 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 18 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 19 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.12 -3.55 6.05 31.79 0.19 -3.36 16 24 C 0.13 4.59 3.48 45.34 0.16 4.75 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 C -0.15 -4.19 9.10 71.98 0.65 -3.54 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.73 6.99 -2.38 -0.02 1.71 16 30 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.20 3.79 6.47 -2.91 -0.02 3.77 16 32 H 0.06 2.30 6.60 -2.39 -0.02 2.29 16 33 H 0.10 2.18 7.73 -2.39 -0.02 2.17 16 34 H 0.37 20.17 7.82 -92.71 -0.72 19.45 16 35 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.12 2.49 7.85 -2.38 -0.02 2.47 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.41 6.75 -2.39 -0.02 1.40 16 Total: -1.00 -77.82 327.96 2.42 -75.40 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.49 Total: 34.87 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.90 Total: 2.54 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -4.96 Total: -132.37 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.06 Total: -27.87 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.82 2.42 -75.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.243 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds