Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34483 * 126.83775 * 2 1 4 4 N 1.36438 * 108.85947 * 180.26271 * 3 2 1 5 5 H 0.97005 * 124.85472 * 179.73804 * 4 3 2 6 6 C 1.34658 * 110.30084 * 359.71070 * 4 3 2 7 7 C 1.36774 * 108.39615 * 359.97438 * 6 4 3 8 8 C 1.47255 * 126.94462 * 180.02562 * 7 6 4 9 9 O 1.21624 * 120.00343 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00139 * 0.02615 * 8 7 6 11 11 C 1.47031 * 125.64691 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.26879 * 181.01415 * 11 10 8 13 13 H 1.08997 * 110.72099 * 263.64813 * 12 11 10 14 14 N 1.46502 * 110.71560 * 140.55624 * 12 11 10 15 15 C 1.36935 * 119.99663 * 86.45400 * 14 12 11 16 16 H 1.07999 * 120.00603 * 0.02562 * 15 14 12 17 17 C 1.38822 * 119.99507 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99702 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47009 * 60.00158 * 19 17 15 21 21 H 1.48497 * 109.47150 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47618 * 300.00151 * 19 17 15 23 23 C 1.55156 * 102.94181 * 22.19441 * 12 11 10 24 24 C 1.47422 * 125.65171 * 179.97438 * 10 8 7 25 25 H 1.08998 * 110.37024 * 274.75654 * 24 10 8 26 26 C 1.53006 * 110.45940 * 37.03133 * 24 10 8 27 27 H 1.08996 * 109.47468 * 270.20128 * 1 2 3 28 28 H 1.08997 * 109.47207 * 30.20974 * 1 2 3 29 29 H 1.09002 * 109.47159 * 150.20461 * 1 2 3 30 30 H 1.08007 * 125.56736 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.80511 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.88059 * 61.59780 * 11 10 8 33 33 H 1.08994 * 109.87878 * 300.43060 * 11 10 8 34 34 H 0.97003 * 120.00356 * 266.44967 * 14 12 11 35 35 H 0.97001 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.08999 * 111.00338 * 82.57390 * 23 12 11 37 37 H 1.09000 * 110.99867 * 206.38039 * 23 12 11 38 38 H 1.08993 * 109.46968 * 175.46557 * 26 24 10 39 39 H 1.08995 * 109.46802 * 295.46911 * 26 24 10 40 40 H 1.09003 * 109.46852 * 55.46676 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6110 0.6552 -0.0059 5 1 4.3840 1.2413 -0.0108 6 6 3.6656 -0.6903 -0.0034 7 6 2.3864 -1.1742 0.0048 8 6 1.9749 -2.5880 0.0106 9 8 0.7937 -2.8777 0.0174 10 7 2.9073 -3.5612 0.0084 11 6 4.3628 -3.3534 0.0010 12 6 5.0245 -4.7474 -0.0250 13 1 5.2991 -5.0628 0.9816 14 7 6.1964 -4.7484 -0.9042 15 6 7.4185 -4.3695 -0.4165 16 1 7.5187 -4.0703 0.6164 17 6 8.5290 -4.3711 -1.2495 18 7 8.4071 -4.7362 -2.5081 19 14 10.1961 -3.8535 -0.5844 20 1 10.5841 -4.7521 0.5325 21 1 11.2099 -3.9427 -1.6658 22 1 10.1198 -2.4551 -0.0908 23 6 3.9045 -5.6529 -0.6019 24 6 2.6368 -5.0104 0.0141 25 1 2.4893 -5.3648 1.0343 26 6 1.4090 -5.3286 -0.8417 27 1 -0.3634 0.0036 1.0276 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5107 30 1 1.9868 2.1059 -0.0004 31 1 4.5664 -1.2861 -0.0073 32 1 4.6651 -2.8163 0.9000 33 1 4.6521 -2.7891 -0.8855 34 1 6.1066 -5.0176 -1.8318 35 1 9.1831 -4.7376 -3.0900 36 1 3.8804 -5.5990 -1.6903 37 1 4.0236 -6.6832 -0.2664 38 1 1.2713 -6.4087 -0.8920 39 1 0.5265 -4.8701 -0.3956 40 1 1.5547 -4.9337 -1.8471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989794221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = 28.880368 kcal Electronic energy + Delta-G solvation = -21867.200428 eV Core-core repulsion = 18683.127184 eV Total energy + Delta-G solvation = -3184.073244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11438 -39.41037 -37.03897 -34.15644 -32.32155 -32.06155 -31.38824 -29.11198 -28.35667 -26.49389 -25.44018 -24.06970 -22.88599 -20.88571 -20.39647 -19.43118 -18.54805 -17.40327 -17.22063 -16.22867 -15.77464 -14.87997 -14.69221 -14.18885 -13.78683 -13.64159 -13.53775 -13.24788 -13.10990 -12.85622 -12.66237 -12.57230 -12.22751 -12.00267 -11.82176 -11.60157 -11.27301 -11.19649 -10.99176 -10.69670 -10.64398 -10.34909 -10.05722 -9.78265 -9.26579 -9.00063 -8.54474 -8.17925 -8.12663 -7.13417 -5.89365 -3.20431 1.98774 2.49309 3.24300 3.34607 3.40054 3.41363 3.51309 3.87183 4.47611 4.89159 5.02636 5.12525 5.18254 5.28593 5.31126 5.50592 5.51598 5.59190 5.62139 5.73094 5.90003 5.92360 5.93680 5.96990 6.11902 6.15463 6.17061 6.23317 6.38359 6.47963 6.52129 6.58427 6.77698 6.87328 6.98633 7.02163 7.52191 7.57702 8.02691 8.28137 8.71025 9.39944 9.94807 10.29844 11.32463 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.005300 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.911862 B = 5281.563692 C = 6618.555045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.113 4.113 3 C -0.034 4.034 4 N -0.552 5.552 5 H 0.417 0.583 6 C 0.044 3.956 7 C -0.227 4.227 8 C 0.603 3.397 9 O -0.554 6.554 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.171 3.829 13 H 0.065 0.935 14 N -0.714 5.714 15 C -0.251 4.251 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.136 4.136 24 C 0.139 3.861 25 H 0.070 0.930 26 C -0.159 4.159 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.165 0.835 31 H 0.189 0.811 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 7.870 5.041 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C -0.161 4.161 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.092 4.092 7 C -0.237 4.237 8 C 0.394 3.606 9 O -0.434 6.434 10 N -0.343 5.343 11 C -0.057 4.057 12 C 0.058 3.942 13 H 0.083 0.917 14 N -0.354 5.354 15 C -0.382 4.382 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.213 1.213 23 C -0.175 4.175 24 C 0.036 3.964 25 H 0.088 0.912 26 C -0.216 4.216 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.182 0.818 31 H 0.205 0.795 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.587 7.915 5.111 14.934 hybrid contribution 1.600 0.626 -0.015 1.718 sum -9.986 8.541 5.097 14.094 Atomic orbital electron populations 1.20145 0.89570 1.02312 1.01622 1.20510 0.95430 0.90437 1.05636 1.21523 0.82731 0.98978 1.12868 1.41590 1.08144 1.06973 1.57903 0.74714 1.23023 0.99886 0.83608 1.02730 1.20341 0.92591 0.92729 1.18023 1.17034 0.84394 0.83443 0.75686 1.90639 1.16936 1.83341 1.52521 1.48425 1.06992 1.05904 1.72938 1.23491 0.78731 1.02602 1.00842 1.21205 0.87110 0.90480 0.95357 0.91670 1.42387 1.02991 1.79537 1.10490 1.19205 0.85554 1.38058 0.95354 0.91015 1.24765 0.98053 1.01825 0.95751 1.69649 1.29840 1.53357 1.04724 0.86281 0.83910 0.78345 0.77667 1.21115 1.21643 1.21257 1.23134 0.93652 0.99410 1.01306 1.21799 0.95575 0.80001 0.99041 0.91172 1.22112 0.98778 1.00744 1.00016 0.92145 0.92728 0.90386 0.81780 0.79476 0.92291 0.90680 0.77826 0.93257 0.90520 0.90234 0.92553 0.90013 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.97 36.00 0.36 -0.65 16 2 C -0.11 -1.62 6.35 -102.54 -0.65 -2.27 16 3 C -0.03 -0.38 11.82 -16.83 -0.20 -0.58 16 4 N -0.55 -6.11 5.90 -12.85 -0.08 -6.18 16 5 H 0.42 3.21 8.96 -40.82 -0.37 2.84 16 6 C 0.04 0.61 10.42 -16.84 -0.18 0.43 16 7 C -0.23 -3.66 6.26 -103.35 -0.65 -4.31 16 8 C 0.60 10.78 7.62 -12.60 -0.10 10.69 16 9 O -0.55 -10.79 13.05 5.26 0.07 -10.72 16 10 N -0.61 -10.21 3.24 -164.36 -0.53 -10.75 16 11 C 0.07 1.17 4.75 -3.06 -0.01 1.16 16 12 C 0.17 3.13 3.59 -66.09 -0.24 2.90 16 13 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 14 N -0.71 -16.49 5.18 -51.65 -0.27 -16.75 16 15 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 16 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 19 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.14 -2.17 6.11 -24.58 -0.15 -2.32 16 24 C 0.14 2.15 3.76 -66.42 -0.25 1.90 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 C -0.16 -2.37 8.60 37.16 0.32 -2.05 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.15 6.86 -51.93 -0.36 0.80 16 30 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.19 2.59 4.42 -52.49 -0.23 2.36 16 32 H 0.06 0.94 7.03 -51.93 -0.37 0.57 16 33 H 0.08 1.37 6.76 -51.93 -0.35 1.02 16 34 H 0.39 9.66 7.71 -40.82 -0.31 9.34 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.34 6.09 -51.93 -0.32 1.02 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -30.97 322.96 -7.87 -38.84 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.64 Total: 12.48 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.99 Total: -1.96 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.15 Total: -59.58 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.97 -7.87 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.719 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds