Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34483 * 126.83775 * 2 1 4 4 N 1.36438 * 108.85947 * 180.26271 * 3 2 1 5 5 H 0.97005 * 124.85472 * 179.73804 * 4 3 2 6 6 C 1.34658 * 110.30084 * 359.71070 * 4 3 2 7 7 C 1.36774 * 108.39615 * 359.97438 * 6 4 3 8 8 C 1.47255 * 126.94462 * 180.02562 * 7 6 4 9 9 O 1.21624 * 120.00343 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00139 * 0.02615 * 8 7 6 11 11 C 1.47031 * 125.64691 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.26879 * 181.01415 * 11 10 8 13 13 H 1.08997 * 110.72099 * 263.64813 * 12 11 10 14 14 N 1.46502 * 110.71560 * 140.55624 * 12 11 10 15 15 C 1.36935 * 119.99663 * 86.45400 * 14 12 11 16 16 H 1.07999 * 120.00603 * 0.02562 * 15 14 12 17 17 C 1.38822 * 119.99507 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99702 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47009 * 60.00158 * 19 17 15 21 21 H 1.48497 * 109.47150 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47618 * 300.00151 * 19 17 15 23 23 C 1.55156 * 102.94181 * 22.19441 * 12 11 10 24 24 C 1.47422 * 125.65171 * 179.97438 * 10 8 7 25 25 H 1.08998 * 110.37024 * 274.75654 * 24 10 8 26 26 C 1.53006 * 110.45940 * 37.03133 * 24 10 8 27 27 H 1.08996 * 109.47468 * 270.20128 * 1 2 3 28 28 H 1.08997 * 109.47207 * 30.20974 * 1 2 3 29 29 H 1.09002 * 109.47159 * 150.20461 * 1 2 3 30 30 H 1.08007 * 125.56736 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.80511 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.88059 * 61.59780 * 11 10 8 33 33 H 1.08994 * 109.87878 * 300.43060 * 11 10 8 34 34 H 0.97003 * 120.00356 * 266.44967 * 14 12 11 35 35 H 0.97001 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.08999 * 111.00338 * 82.57390 * 23 12 11 37 37 H 1.09000 * 110.99867 * 206.38039 * 23 12 11 38 38 H 1.08993 * 109.46968 * 175.46557 * 26 24 10 39 39 H 1.08995 * 109.46802 * 295.46911 * 26 24 10 40 40 H 1.09003 * 109.46852 * 55.46676 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6110 0.6552 -0.0059 5 1 4.3840 1.2413 -0.0108 6 6 3.6656 -0.6903 -0.0034 7 6 2.3864 -1.1742 0.0048 8 6 1.9749 -2.5880 0.0106 9 8 0.7937 -2.8777 0.0174 10 7 2.9073 -3.5612 0.0084 11 6 4.3628 -3.3534 0.0010 12 6 5.0245 -4.7474 -0.0250 13 1 5.2991 -5.0628 0.9816 14 7 6.1964 -4.7484 -0.9042 15 6 7.4185 -4.3695 -0.4165 16 1 7.5187 -4.0703 0.6164 17 6 8.5290 -4.3711 -1.2495 18 7 8.4071 -4.7362 -2.5081 19 14 10.1961 -3.8535 -0.5844 20 1 10.5841 -4.7521 0.5325 21 1 11.2099 -3.9427 -1.6658 22 1 10.1198 -2.4551 -0.0908 23 6 3.9045 -5.6529 -0.6019 24 6 2.6368 -5.0104 0.0141 25 1 2.4893 -5.3648 1.0343 26 6 1.4090 -5.3286 -0.8417 27 1 -0.3634 0.0036 1.0276 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5107 30 1 1.9868 2.1059 -0.0004 31 1 4.5664 -1.2861 -0.0073 32 1 4.6651 -2.8163 0.9000 33 1 4.6521 -2.7891 -0.8855 34 1 6.1066 -5.0176 -1.8318 35 1 9.1831 -4.7376 -3.0900 36 1 3.8804 -5.5990 -1.6903 37 1 4.0236 -6.6832 -0.2664 38 1 1.2713 -6.4087 -0.8920 39 1 0.5265 -4.8701 -0.3956 40 1 1.5547 -4.9337 -1.8471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989794221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = 8.893505 kcal Electronic energy + Delta-G solvation = -21868.067124 eV Core-core repulsion = 18683.127184 eV Total energy + Delta-G solvation = -3184.939939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17432 -40.71165 -38.47478 -35.91107 -33.41664 -33.33112 -33.08219 -30.28881 -29.95561 -27.50340 -26.73530 -25.86878 -24.25077 -22.08689 -21.86371 -20.57779 -19.64178 -19.15527 -18.46583 -17.58066 -17.13257 -16.49422 -16.04030 -15.49701 -15.39897 -15.08468 -14.81704 -14.51441 -14.31311 -14.19289 -13.94461 -13.54822 -13.40941 -13.28894 -13.22800 -12.95311 -12.86116 -12.75107 -12.34162 -12.28869 -12.07809 -12.03557 -11.69200 -11.50803 -10.96349 -10.53130 -9.72288 -9.40583 -9.16350 -9.04479 -7.92128 -5.22376 0.80372 1.51597 1.51784 1.53653 1.59610 2.06242 2.48773 2.57489 2.60960 3.39343 3.57741 3.86351 3.91141 3.99681 4.11825 4.21886 4.27106 4.33272 4.47808 4.53568 4.55795 4.68098 4.76336 4.81126 4.87630 4.92292 4.96355 5.13340 5.14284 5.18134 5.33637 5.35043 5.36614 5.56775 5.62151 5.88157 5.99313 6.27992 6.67598 6.68702 7.35573 7.37353 8.07511 8.32103 9.30674 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.005300 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.911862 B = 5281.563692 C = 6618.555045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.149 4.149 3 C -0.009 4.009 4 N -0.537 5.537 5 H 0.435 0.565 6 C 0.043 3.957 7 C -0.263 4.263 8 C 0.594 3.406 9 O -0.579 6.579 10 N -0.611 5.611 11 C 0.085 3.915 12 C 0.165 3.835 13 H 0.072 0.928 14 N -0.724 5.724 15 C -0.242 4.242 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.301 1.301 22 H -0.275 1.275 23 C -0.125 4.125 24 C 0.137 3.863 25 H 0.084 0.916 26 C -0.149 4.149 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.207 0.793 31 H 0.186 0.814 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 9.357 6.351 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.137 4.137 4 N -0.132 5.132 5 H 0.274 0.726 6 C -0.095 4.095 7 C -0.273 4.273 8 C 0.387 3.613 9 O -0.461 6.461 10 N -0.344 5.344 11 C -0.041 4.041 12 C 0.055 3.945 13 H 0.090 0.910 14 N -0.363 5.363 15 C -0.374 4.374 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.206 1.206 21 H -0.228 1.228 22 H -0.201 1.201 23 C -0.163 4.163 24 C 0.034 3.966 25 H 0.102 0.898 26 C -0.207 4.207 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.223 0.777 31 H 0.203 0.797 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.530 9.425 6.470 16.236 hybrid contribution 1.495 0.193 -0.385 1.556 sum -10.034 9.618 6.085 15.173 Atomic orbital electron populations 1.20081 0.89119 1.02170 1.01679 1.20826 0.96257 0.90721 1.07688 1.22085 0.82023 1.00043 1.09519 1.41627 1.09083 1.06183 1.56285 0.72552 1.22882 0.98982 0.84926 1.02702 1.20490 0.94190 0.92408 1.20257 1.17433 0.84191 0.84418 0.75275 1.90618 1.17801 1.83884 1.53797 1.48470 1.06702 1.06425 1.72780 1.23176 0.78820 1.01327 1.00767 1.21384 0.86401 0.91842 0.94921 0.91022 1.42517 1.03780 1.79570 1.10467 1.19614 0.86331 1.35847 0.95606 0.89929 1.25503 1.01405 1.03140 0.96063 1.69809 1.30176 1.55809 1.06018 0.85289 0.79780 0.78449 0.76673 1.20552 1.22809 1.20092 1.23044 0.92747 0.99999 1.00529 1.21925 0.95431 0.79400 0.99830 0.89799 1.22007 0.97756 1.02189 0.98745 0.92014 0.90035 0.93259 0.77656 0.79732 0.91062 0.92136 0.79242 0.94095 0.91638 0.88407 0.89995 0.91543 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 9.97 71.23 0.71 -1.10 16 2 C -0.15 -4.04 6.35 -18.51 -0.12 -4.16 16 3 C -0.01 -0.17 11.82 83.12 0.98 0.81 16 4 N -0.54 -10.42 5.90 -194.56 -1.15 -11.57 16 5 H 0.43 5.27 8.96 -92.70 -0.83 4.44 16 6 C 0.04 1.14 10.42 83.92 0.87 2.02 16 7 C -0.26 -8.39 6.26 -19.04 -0.12 -8.51 16 8 C 0.59 21.46 7.62 86.61 0.66 22.12 16 9 O -0.58 -23.09 13.05 -4.11 -0.05 -23.14 16 10 N -0.61 -20.35 3.24 -792.17 -2.57 -22.92 16 11 C 0.08 2.82 4.75 86.73 0.41 3.23 16 12 C 0.16 5.91 3.59 46.18 0.17 6.07 16 13 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 14 N -0.72 -33.31 5.18 -317.32 -1.64 -34.95 16 15 C -0.24 -12.24 9.98 84.04 0.84 -11.40 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -3.67 5.50 84.87 0.47 -3.20 16 18 N -0.97 -56.32 13.06 21.65 0.28 -56.04 16 19 Si 0.97 43.15 29.55 68.60 2.03 45.18 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 C -0.12 -3.85 6.11 31.98 0.20 -3.66 16 24 C 0.14 4.12 3.76 45.47 0.17 4.29 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 C -0.15 -4.39 8.60 71.98 0.62 -3.77 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.49 6.86 -2.39 -0.02 1.47 16 30 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.19 4.96 4.42 -2.91 -0.01 4.94 16 32 H 0.07 2.19 7.03 -2.39 -0.02 2.17 16 33 H 0.06 2.21 6.76 -2.39 -0.02 2.19 16 34 H 0.38 18.97 7.71 -92.71 -0.72 18.26 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.19 6.09 -2.39 -0.01 2.17 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.40 322.96 2.28 -65.12 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.47 Total: 35.56 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.86 Total: 2.75 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -5.08 Total: -125.47 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.40 2.28 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989794221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds