Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34664 * 125.79741 * 2 1 4 4 H 0.96993 * 124.85669 * 0.07148 * 3 2 1 5 5 C 1.36450 * 110.29344 * 180.29778 * 3 2 1 6 6 C 1.34489 * 108.85622 * 359.74829 * 5 3 2 7 7 C 1.36769 * 125.80244 * 179.86984 * 2 1 3 8 8 C 1.47255 * 126.94036 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00111 * 320.31545 * 8 7 2 10 10 N 1.34784 * 120.00174 * 140.31932 * 8 7 2 11 11 C 1.46928 * 120.62788 * 354.37127 * 10 8 7 12 12 C 1.53192 * 108.89308 * 233.51600 * 11 10 8 13 13 C 1.53074 * 109.29496 * 305.58015 * 12 11 10 14 14 N 1.46500 * 109.43936 * 181.23550 * 13 12 11 15 15 C 1.36932 * 120.00147 * 84.79878 * 14 13 12 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00274 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47010 * 120.00237 * 19 17 15 22 22 H 1.48500 * 109.47029 * 239.99790 * 19 17 15 23 23 C 1.53041 * 109.65882 * 61.15291 * 13 12 11 24 24 C 1.46925 * 120.62976 * 174.35236 * 10 8 7 25 25 H 1.09009 * 109.46724 * 270.13108 * 1 2 3 26 26 H 1.09001 * 109.47501 * 30.12502 * 1 2 3 27 27 H 1.09000 * 109.47476 * 150.13372 * 1 2 3 28 28 H 1.08000 * 125.57282 * 179.73226 * 5 3 2 29 29 H 1.08004 * 126.83388 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.58715 * 353.37940 * 11 10 8 31 31 H 1.09003 * 109.58366 * 113.65692 * 11 10 8 32 32 H 1.09001 * 109.49703 * 65.39096 * 12 11 10 33 33 H 1.08993 * 109.49454 * 185.48513 * 12 11 10 34 34 H 1.08999 * 109.34725 * 301.12895 * 13 12 11 35 35 H 0.97002 * 119.99850 * 264.79344 * 14 13 12 36 36 H 0.96996 * 119.99574 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.49836 * 178.75133 * 23 13 12 38 38 H 1.09000 * 109.52213 * 58.66636 * 23 13 12 39 39 H 1.09002 * 109.58032 * 246.19575 * 24 10 8 40 40 H 1.08999 * 109.58939 * 6.47741 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0010 5 6 3.6095 0.7275 -0.0067 6 6 3.6882 -0.6151 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5155 0.0062 9 8 0.9159 -2.8541 0.6801 10 7 2.5279 -3.4275 -0.7370 11 6 3.6030 -3.0148 -1.6495 12 6 3.3025 -3.5605 -3.0490 13 6 3.0901 -5.0742 -2.9669 14 7 2.8316 -5.6037 -4.3082 15 6 3.8780 -5.9231 -5.1316 16 1 4.8939 -5.7843 -4.7924 17 6 3.6330 -6.4253 -6.4023 18 7 2.3949 -6.5950 -6.8155 19 14 5.0606 -6.8604 -7.5258 20 1 6.3418 -6.5784 -6.8301 21 1 4.9935 -8.3020 -7.8758 22 1 4.9811 -6.0460 -8.7651 23 6 1.8955 -5.3780 -2.0598 24 6 2.1836 -4.8532 -0.6497 25 1 -0.3633 0.0024 1.0278 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3634 -0.8912 -0.5117 28 1 4.4497 1.4061 -0.0122 29 1 4.5890 -1.2109 -0.0092 30 1 3.6547 -1.9266 -1.6848 31 1 4.5542 -3.4146 -1.2979 32 1 2.3997 -3.0889 -3.4372 33 1 4.1404 -3.3438 -3.7116 34 1 3.9851 -5.5427 -2.5578 35 1 1.9191 -5.7281 -4.6129 36 1 2.2239 -6.9463 -7.7033 37 1 1.7329 -6.4551 -2.0209 38 1 1.0047 -4.8896 -2.4548 39 1 3.0187 -5.4049 -0.2181 40 1 1.3004 -4.9782 -0.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990857094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = 19.207665 kcal Electronic energy + Delta-G solvation = -21649.147978 eV Core-core repulsion = 18464.655295 eV Total energy + Delta-G solvation = -3184.492684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37253 -39.37376 -37.08895 -34.37425 -32.20190 -31.71204 -31.34108 -30.24627 -29.10738 -26.55461 -24.86379 -23.09528 -22.91363 -21.44959 -20.82414 -19.78595 -18.21946 -17.73022 -17.00345 -16.20036 -15.49993 -15.10831 -14.74742 -14.40911 -13.85422 -13.81657 -13.56966 -13.48090 -13.24923 -13.12157 -12.83226 -12.70900 -12.55594 -12.16851 -11.81261 -11.68701 -11.40310 -10.91141 -10.80007 -10.74510 -10.38376 -10.16581 -9.75663 -9.65296 -9.60692 -8.93294 -8.76459 -8.37979 -8.17345 -6.93278 -5.74782 -3.03425 1.85307 2.36103 2.97824 3.31718 3.43904 3.49346 3.51779 3.56811 4.60262 4.70610 4.80129 5.01938 5.08776 5.31618 5.39851 5.43795 5.45567 5.52030 5.57100 5.62156 5.78334 5.79999 5.81237 5.86271 5.99594 6.07199 6.16293 6.33484 6.48743 6.51185 6.61142 6.65690 6.75166 6.86959 7.01839 7.13475 7.31637 7.71692 7.76140 8.43788 8.50976 9.54886 10.13538 10.48335 11.48061 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.003969 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.861791 B = 7053.457533 C = 7468.196977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.019 4.019 6 C -0.166 4.166 7 C -0.223 4.223 8 C 0.591 3.409 9 O -0.557 6.557 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.178 3.822 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 C 0.117 3.883 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 15.762 14.909 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.146 4.146 6 C -0.190 4.190 7 C -0.233 4.233 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.332 5.332 11 C -0.019 4.019 12 C -0.190 4.190 13 C 0.068 3.932 14 N -0.365 5.365 15 C -0.368 4.368 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.177 4.177 24 C -0.006 4.006 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.186 0.814 29 H 0.164 0.836 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.291 15.634 15.164 21.782 hybrid contribution 0.577 0.182 -0.995 1.165 sum 0.868 15.816 14.169 21.252 Atomic orbital electron populations 1.20415 0.87298 1.03462 1.03374 1.20212 0.93517 0.85676 1.03244 1.41517 1.06210 1.08233 1.59097 0.74979 1.21708 0.85628 0.96407 1.10865 1.22063 0.95743 0.93443 1.07757 1.20128 0.93461 0.92111 1.17566 1.17436 0.81571 0.84207 0.78742 1.90728 1.28106 1.81027 1.43806 1.47956 1.36597 1.07175 1.41482 1.22036 0.89011 1.00853 0.90021 1.22648 1.02216 0.99869 0.94281 1.20186 0.95158 0.91136 0.86690 1.42456 1.06687 1.76202 1.11192 1.19293 0.87878 1.34940 0.94699 0.91124 1.24739 0.96233 1.02292 0.97759 1.69676 1.17531 1.51770 1.19173 0.86143 0.81579 0.77741 0.80895 1.20558 1.21913 1.21952 1.22183 0.99902 1.01270 0.94305 1.21589 1.01310 0.79793 0.97907 0.90246 0.91747 0.89489 0.81422 0.83579 0.89221 0.92055 0.92408 0.90872 0.93522 0.78309 0.93604 0.90698 0.91903 0.91775 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.88 36.01 0.36 -0.52 16 2 C 0.09 1.04 7.17 -81.88 -0.59 0.45 16 3 N -0.55 -4.64 5.90 -9.10 -0.05 -4.69 16 4 H 0.41 2.01 8.96 -40.82 -0.37 1.65 16 5 C -0.02 -0.16 11.89 -16.82 -0.20 -0.36 16 6 C -0.17 -1.85 8.69 -37.50 -0.33 -2.17 16 7 C -0.22 -3.06 5.32 -103.36 -0.55 -3.61 16 8 C 0.59 9.66 7.31 -12.59 -0.09 9.57 16 9 O -0.56 -10.48 15.79 5.25 0.08 -10.40 16 10 N -0.60 -9.33 2.97 -174.09 -0.52 -9.85 16 11 C 0.10 1.50 5.54 -3.71 -0.02 1.48 16 12 C -0.15 -2.64 5.67 -26.59 -0.15 -2.80 16 13 C 0.18 3.53 2.73 -67.87 -0.19 3.35 16 14 N -0.73 -18.19 5.12 -53.37 -0.27 -18.46 16 15 C -0.24 -6.52 9.92 -15.06 -0.15 -6.67 16 16 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.14 -2.39 5.55 -26.61 -0.15 -2.54 16 24 C 0.12 1.81 6.44 -3.71 -0.02 1.78 16 25 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 28 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.15 1.46 7.47 -52.48 -0.39 1.07 16 30 H 0.09 1.20 4.74 -51.93 -0.25 0.95 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.38 10.33 7.80 -40.82 -0.32 10.02 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.39 6.99 -51.93 -0.36 1.02 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -33.74 326.37 -8.17 -41.91 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.85 Total: 9.41 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.17 Total: -2.56 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.12 Total: -60.56 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.74 -8.17 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990857094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.118 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds