Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34664 * 125.79741 * 2 1 4 4 H 0.96993 * 124.85669 * 0.07148 * 3 2 1 5 5 C 1.36450 * 110.29344 * 180.29778 * 3 2 1 6 6 C 1.34489 * 108.85622 * 359.74829 * 5 3 2 7 7 C 1.36769 * 125.80244 * 179.86984 * 2 1 3 8 8 C 1.47255 * 126.94036 * 359.97438 * 7 2 1 9 9 O 1.21631 * 120.00111 * 320.31545 * 8 7 2 10 10 N 1.34784 * 120.00174 * 140.31932 * 8 7 2 11 11 C 1.46928 * 120.62788 * 354.37127 * 10 8 7 12 12 C 1.53192 * 108.89308 * 233.51600 * 11 10 8 13 13 C 1.53074 * 109.29496 * 305.58015 * 12 11 10 14 14 N 1.46500 * 109.43936 * 181.23550 * 13 12 11 15 15 C 1.36932 * 120.00147 * 84.79878 * 14 13 12 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00274 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47010 * 120.00237 * 19 17 15 22 22 H 1.48500 * 109.47029 * 239.99790 * 19 17 15 23 23 C 1.53041 * 109.65882 * 61.15291 * 13 12 11 24 24 C 1.46925 * 120.62976 * 174.35236 * 10 8 7 25 25 H 1.09009 * 109.46724 * 270.13108 * 1 2 3 26 26 H 1.09001 * 109.47501 * 30.12502 * 1 2 3 27 27 H 1.09000 * 109.47476 * 150.13372 * 1 2 3 28 28 H 1.08000 * 125.57282 * 179.73226 * 5 3 2 29 29 H 1.08004 * 126.83388 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.58715 * 353.37940 * 11 10 8 31 31 H 1.09003 * 109.58366 * 113.65692 * 11 10 8 32 32 H 1.09001 * 109.49703 * 65.39096 * 12 11 10 33 33 H 1.08993 * 109.49454 * 185.48513 * 12 11 10 34 34 H 1.08999 * 109.34725 * 301.12895 * 13 12 11 35 35 H 0.97002 * 119.99850 * 264.79344 * 14 13 12 36 36 H 0.96996 * 119.99574 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.49836 * 178.75133 * 23 13 12 38 38 H 1.09000 * 109.52213 * 58.66636 * 23 13 12 39 39 H 1.09002 * 109.58032 * 246.19575 * 24 10 8 40 40 H 1.08999 * 109.58939 * 6.47741 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0010 5 6 3.6095 0.7275 -0.0067 6 6 3.6882 -0.6151 -0.0055 7 6 2.3071 -1.1092 0.0025 8 6 1.8702 -2.5155 0.0062 9 8 0.9159 -2.8541 0.6801 10 7 2.5279 -3.4275 -0.7370 11 6 3.6030 -3.0148 -1.6495 12 6 3.3025 -3.5605 -3.0490 13 6 3.0901 -5.0742 -2.9669 14 7 2.8316 -5.6037 -4.3082 15 6 3.8780 -5.9231 -5.1316 16 1 4.8939 -5.7843 -4.7924 17 6 3.6330 -6.4253 -6.4023 18 7 2.3949 -6.5950 -6.8155 19 14 5.0606 -6.8604 -7.5258 20 1 6.3418 -6.5784 -6.8301 21 1 4.9935 -8.3020 -7.8758 22 1 4.9811 -6.0460 -8.7651 23 6 1.8955 -5.3780 -2.0598 24 6 2.1836 -4.8532 -0.6497 25 1 -0.3633 0.0024 1.0278 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3634 -0.8912 -0.5117 28 1 4.4497 1.4061 -0.0122 29 1 4.5890 -1.2109 -0.0092 30 1 3.6547 -1.9266 -1.6848 31 1 4.5542 -3.4146 -1.2979 32 1 2.3997 -3.0889 -3.4372 33 1 4.1404 -3.3438 -3.7116 34 1 3.9851 -5.5427 -2.5578 35 1 1.9191 -5.7281 -4.6129 36 1 2.2239 -6.9463 -7.7033 37 1 1.7329 -6.4551 -2.0209 38 1 1.0047 -4.8896 -2.4548 39 1 3.0187 -5.4049 -0.2181 40 1 1.3004 -4.9782 -0.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990857094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = -3.580925 kcal Electronic energy + Delta-G solvation = -21650.136166 eV Core-core repulsion = 18464.655295 eV Total energy + Delta-G solvation = -3185.480871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20937 -40.60033 -38.54198 -36.09390 -33.87581 -32.62763 -32.49779 -31.41457 -30.82640 -27.49473 -26.44785 -24.64811 -24.29840 -22.75000 -21.60727 -21.20519 -19.48157 -18.96915 -18.52120 -17.41427 -16.68020 -16.58986 -16.21385 -15.48599 -15.42827 -15.26444 -15.03884 -14.56811 -14.51563 -14.43781 -13.81063 -13.65837 -13.51594 -13.42386 -13.25772 -13.00967 -12.85038 -12.60086 -12.49362 -12.16589 -12.08794 -11.97645 -11.67471 -11.29369 -10.97698 -10.80944 -9.72296 -9.53939 -9.04972 -8.98312 -7.91641 -5.20562 0.89357 1.49454 1.50031 1.59119 1.60137 2.00293 2.37304 2.51094 2.58842 3.41892 3.74623 3.86148 3.93783 4.02862 4.16830 4.22858 4.31008 4.39518 4.41333 4.43680 4.66294 4.68183 4.68822 4.85409 4.87731 4.90757 4.99317 5.06882 5.07554 5.10344 5.22307 5.34845 5.52072 5.56511 5.68770 5.84380 6.04717 6.30041 6.53387 6.73745 7.28573 7.35795 8.11261 8.35051 9.32503 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.003969 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.861791 B = 7053.457533 C = 7468.196977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 N -0.538 5.538 4 H 0.433 0.567 5 C 0.003 3.997 6 C -0.189 4.189 7 C -0.263 4.263 8 C 0.585 3.415 9 O -0.592 6.592 10 N -0.603 5.603 11 C 0.116 3.884 12 C -0.138 4.138 13 C 0.174 3.826 14 N -0.739 5.739 15 C -0.234 4.234 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.973 5.973 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.126 4.126 24 C 0.122 3.878 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.209 0.791 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 17.919 15.894 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.125 4.125 6 C -0.213 4.213 7 C -0.273 4.273 8 C 0.377 3.623 9 O -0.475 6.475 10 N -0.334 5.334 11 C -0.007 4.007 12 C -0.179 4.179 13 C 0.066 3.934 14 N -0.378 5.378 15 C -0.366 4.366 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.625 5.625 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.224 1.224 22 H -0.223 1.223 23 C -0.165 4.165 24 C 0.000 4.000 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.226 0.774 29 H 0.172 0.828 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.398 17.842 16.190 24.211 hybrid contribution -0.091 -0.417 -1.221 1.294 sum 2.307 17.425 14.968 23.087 Atomic orbital electron populations 1.20398 0.86836 1.03549 1.03600 1.20349 0.94123 0.86186 1.02744 1.41538 1.05982 1.08542 1.57487 0.72723 1.22313 0.86401 0.96153 1.07677 1.22241 0.94799 0.94749 1.09471 1.20168 0.95542 0.91084 1.20537 1.17932 0.80881 0.85405 0.78070 1.90692 1.29668 1.81808 1.45327 1.48029 1.36805 1.07044 1.41545 1.22008 0.89331 1.01845 0.87491 1.22439 1.00973 0.97983 0.96459 1.20421 0.96118 0.92234 0.84675 1.42688 1.05547 1.76676 1.12897 1.19698 0.88772 1.33202 0.94909 0.90185 1.25560 0.98600 1.03342 0.99542 1.69842 1.19696 1.53608 1.19327 0.85087 0.79322 0.76788 0.78676 1.18641 1.22353 1.22320 1.22038 0.98223 1.01158 0.95091 1.21514 1.02002 0.80323 0.96209 0.89962 0.88765 0.92232 0.77426 0.82763 0.87552 0.89905 0.94379 0.91559 0.93092 0.79937 0.94205 0.90810 0.93550 0.89729 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.88 71.24 0.70 -0.94 16 2 C 0.08 1.80 7.17 41.78 0.30 2.10 16 3 N -0.54 -7.18 5.90 -182.72 -1.08 -8.26 16 4 H 0.43 2.50 8.96 -92.71 -0.83 1.66 16 5 C 0.00 0.03 11.89 83.12 0.99 1.02 16 6 C -0.19 -3.71 8.69 23.62 0.21 -3.51 16 7 C -0.26 -6.94 5.32 -19.04 -0.10 -7.04 16 8 C 0.59 19.12 7.31 86.61 0.63 19.75 16 9 O -0.59 -22.82 15.79 -4.13 -0.07 -22.89 16 10 N -0.60 -18.38 2.97 -822.94 -2.45 -20.83 16 11 C 0.12 3.16 5.54 86.36 0.48 3.64 16 12 C -0.14 -4.82 5.67 30.68 0.17 -4.65 16 13 C 0.17 6.86 2.73 45.03 0.12 6.98 16 14 N -0.74 -37.62 5.12 -322.76 -1.65 -39.27 16 15 C -0.23 -12.88 9.92 84.03 0.83 -12.05 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 18 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 19 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 24 C 0.12 3.74 6.44 86.36 0.56 4.30 16 25 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.47 7.67 -2.39 -0.02 1.45 16 28 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.15 2.65 7.47 -2.91 -0.02 2.63 16 30 H 0.11 2.62 4.74 -2.39 -0.01 2.61 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.98 8.08 -2.39 -0.02 1.97 16 35 H 0.37 20.58 7.80 -92.71 -0.72 19.86 16 36 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.65 6.99 -2.39 -0.02 2.63 16 Total: -1.00 -74.49 326.37 2.10 -72.39 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.49 Total: 29.59 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.53 Total: 1.29 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -4.90 Total: -128.40 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.49 2.10 -72.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990857094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.810 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds