Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39838 * 126.45451 * 2 1 4 4 C 1.35452 * 107.86074 * 180.26892 * 3 2 1 5 5 N 1.35531 * 108.87201 * 359.74227 * 4 3 2 6 6 H 0.97006 * 125.67630 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64656 * 359.97438 * 5 4 3 8 8 C 1.46678 * 126.23791 * 179.97438 * 7 5 4 9 9 O 1.21690 * 120.00213 * 221.54878 * 8 7 5 10 10 N 1.34775 * 119.99699 * 41.54327 * 8 7 5 11 11 C 1.46930 * 120.63340 * 176.03942 * 10 8 7 12 12 C 1.53189 * 108.89546 * 233.51614 * 11 10 8 13 13 C 1.53069 * 109.29706 * 305.57712 * 12 11 10 14 14 N 1.46500 * 109.44479 * 181.23439 * 13 12 11 15 15 C 1.36941 * 119.99593 * 84.79601 * 14 13 12 16 16 H 1.07991 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99237 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00358 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99495 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47094 * 89.99370 * 19 17 15 21 21 H 1.48502 * 109.47097 * 209.99735 * 19 17 15 22 22 H 1.48499 * 109.47028 * 329.99452 * 19 17 15 23 23 C 1.53038 * 109.65733 * 61.14868 * 13 12 11 24 24 C 1.46932 * 120.63372 * 356.01656 * 10 8 7 25 25 H 1.09007 * 109.46535 * 270.17970 * 1 2 3 26 26 H 1.08997 * 109.47072 * 30.17592 * 1 2 3 27 27 H 1.08994 * 109.47220 * 150.17984 * 1 2 3 28 28 H 1.08001 * 126.07069 * 0.02562 * 3 2 1 29 29 H 1.08001 * 125.56038 * 179.72521 * 4 3 2 30 30 H 1.09004 * 109.58141 * 353.37868 * 11 10 8 31 31 H 1.08999 * 109.58498 * 113.65300 * 11 10 8 32 32 H 1.09001 * 109.49854 * 65.38274 * 12 11 10 33 33 H 1.08998 * 109.49965 * 185.47701 * 12 11 10 34 34 H 1.09000 * 109.34568 * 301.12691 * 13 12 11 35 35 H 0.96999 * 119.99651 * 264.79649 * 14 13 12 36 36 H 0.97002 * 119.99842 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.49742 * 178.75184 * 23 13 12 38 38 H 1.09000 * 109.52538 * 58.67381 * 23 13 12 39 39 H 1.08995 * 109.58575 * 246.20213 * 24 10 8 40 40 H 1.09007 * 109.58236 * 6.48172 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6929 -0.0061 5 7 3.6284 -0.6624 -0.0041 6 1 4.4191 -1.2243 -0.0070 7 6 2.3263 -1.1089 0.0039 8 6 1.8899 -2.5092 0.0079 9 8 0.9518 -2.8561 -0.6852 10 7 2.5279 -3.4116 0.7793 11 6 2.0493 -4.7984 0.8607 12 6 1.8468 -5.1677 2.3336 13 6 3.1416 -4.9002 3.1048 14 7 2.9607 -5.2799 4.5081 15 6 3.1482 -6.5800 4.8952 16 1 3.4290 -7.3254 4.1660 17 6 2.9763 -6.9399 6.2248 18 7 2.6336 -6.0315 7.1134 19 14 3.2313 -8.7135 6.7528 20 1 4.6507 -8.9155 7.1399 21 1 2.3541 -9.0159 7.9123 22 1 2.8919 -9.6191 5.6259 23 6 3.4934 -3.4132 3.0203 24 6 3.7155 -3.0276 1.5545 25 1 -0.3633 0.0032 1.0278 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5110 28 1 2.0137 2.1549 0.0004 29 1 4.4972 1.3253 -0.0118 30 1 1.1031 -4.8903 0.3274 31 1 2.7865 -5.4661 0.4146 32 1 1.0438 -4.5617 2.7534 33 1 1.5856 -6.2230 2.4115 34 1 3.9490 -5.4896 2.6703 35 1 2.7081 -4.6104 5.1630 36 1 2.5138 -6.2830 8.0426 37 1 4.4036 -3.2218 3.5887 38 1 2.6760 -2.8215 3.4323 39 1 4.5896 -3.5511 1.1673 40 1 3.8701 -1.9513 1.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991926373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = 24.987824 kcal Electronic energy + Delta-G solvation = -21709.851243 eV Core-core repulsion = 18525.609206 eV Total energy + Delta-G solvation = -3184.242037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58553 -39.44718 -37.35243 -34.59067 -32.73695 -32.04639 -31.15733 -29.79616 -29.05789 -26.98709 -24.94388 -23.33163 -22.85777 -21.55653 -20.91138 -19.67714 -18.92436 -17.93184 -17.02801 -16.47031 -15.53414 -15.30249 -14.85032 -14.25152 -13.98635 -13.87121 -13.72809 -13.60198 -13.23344 -13.19318 -12.91115 -12.68800 -12.43200 -12.29551 -12.00208 -11.61313 -11.54008 -10.97441 -10.93529 -10.84602 -10.47598 -10.28202 -10.02939 -9.81827 -9.71301 -8.95040 -8.84918 -8.62464 -8.18485 -7.01799 -5.81128 -3.10626 1.53807 2.58874 2.87417 2.91449 3.40272 3.41422 3.45956 3.47491 4.53017 4.55147 4.86168 4.89050 5.08218 5.14382 5.20878 5.30594 5.36093 5.51351 5.56191 5.65773 5.72490 5.79975 5.82560 5.86362 5.91758 6.04913 6.14859 6.22725 6.27061 6.39334 6.49479 6.52649 6.68553 6.85562 6.87634 7.00163 7.24998 7.43615 7.65247 8.16253 8.36983 9.48383 10.05038 10.39800 11.41409 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.003819 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.609198 B = 7329.247185 C = 7556.110345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.089 4.089 3 C -0.207 4.207 4 C 0.013 3.987 5 N -0.540 5.540 6 H 0.418 0.582 7 C -0.045 4.045 8 C 0.588 3.412 9 O -0.533 6.533 10 N -0.602 5.602 11 C 0.113 3.887 12 C -0.150 4.150 13 C 0.180 3.820 14 N -0.724 5.724 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.137 4.137 24 C 0.099 3.901 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.170 0.830 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 13.115 -14.727 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.231 4.231 4 C -0.122 4.122 5 N -0.139 5.139 6 H 0.258 0.742 7 C -0.158 4.158 8 C 0.376 3.624 9 O -0.410 6.410 10 N -0.335 5.335 11 C -0.009 4.009 12 C -0.191 4.191 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.176 4.176 24 C -0.025 4.025 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.187 0.813 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.705 12.577 -15.056 19.803 hybrid contribution 0.580 -0.923 0.766 1.333 sum 3.285 11.654 -14.289 18.730 Atomic orbital electron populations 1.20324 0.89632 1.03035 1.02038 1.19855 0.95695 0.90782 1.03372 1.20753 0.91827 0.98632 1.11923 1.21966 0.99515 0.83037 1.07668 1.42331 1.07101 1.07255 1.57195 0.74223 1.20158 0.83872 0.93621 1.18125 1.17165 0.82583 0.83034 0.79612 1.90794 1.29186 1.79102 1.41931 1.48147 1.29314 1.11030 1.44989 1.21740 1.00455 0.80006 0.98681 1.22679 1.01408 1.02297 0.92734 1.20159 0.94161 0.91654 0.87106 1.42421 1.83023 1.08409 1.02579 1.19231 1.39395 0.85996 0.92643 0.91151 1.24744 1.02337 0.97663 0.96053 1.69658 1.53984 1.32333 1.02044 0.86205 0.77484 0.84557 0.78030 1.21719 1.21749 1.20723 1.22169 1.02632 0.98875 0.93963 1.22038 0.87257 1.00421 0.92802 0.91711 0.91717 0.90526 0.84135 0.81320 0.89466 0.91695 0.92162 0.90509 0.93472 0.78259 0.93462 0.90491 0.91572 0.91193 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.19 36.01 0.37 -0.76 16 2 C -0.09 -1.14 6.20 -104.16 -0.65 -1.79 16 3 C -0.21 -2.14 10.76 -39.98 -0.43 -2.57 16 4 C 0.01 0.11 11.89 -16.91 -0.20 -0.09 16 5 N -0.54 -5.22 4.64 -9.39 -0.04 -5.27 16 6 H 0.42 3.03 7.41 -40.82 -0.30 2.73 16 7 C -0.05 -0.60 6.07 -81.98 -0.50 -1.09 16 8 C 0.59 9.07 7.44 -12.85 -0.10 8.98 16 9 O -0.53 -9.74 15.12 5.20 0.08 -9.66 16 10 N -0.60 -8.58 2.97 -174.31 -0.52 -9.10 16 11 C 0.11 1.71 6.42 -3.71 -0.02 1.68 16 12 C -0.15 -2.65 5.67 -26.60 -0.15 -2.80 16 13 C 0.18 3.38 2.73 -67.88 -0.19 3.19 16 14 N -0.72 -17.62 5.12 -53.37 -0.27 -17.90 16 15 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 24 C 0.10 1.20 5.78 -3.71 -0.02 1.18 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.06 6.74 -51.93 -0.35 0.71 16 28 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.09 1.37 7.03 -51.93 -0.36 1.00 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 35 H 0.38 10.03 7.80 -40.82 -0.32 9.72 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.85 4.34 -51.93 -0.23 0.62 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -32.63 324.69 -8.20 -40.82 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.75 Total: 9.72 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.28 Total: -3.46 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.11 Total: -59.36 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.63 -8.20 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991926373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.810 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds