Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39838 * 126.45451 * 2 1 4 4 C 1.35452 * 107.86074 * 180.26892 * 3 2 1 5 5 N 1.35531 * 108.87201 * 359.74227 * 4 3 2 6 6 H 0.97006 * 125.67630 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64656 * 359.97438 * 5 4 3 8 8 C 1.46678 * 126.23791 * 179.97438 * 7 5 4 9 9 O 1.21690 * 120.00213 * 221.54878 * 8 7 5 10 10 N 1.34775 * 119.99699 * 41.54327 * 8 7 5 11 11 C 1.46930 * 120.63340 * 176.03942 * 10 8 7 12 12 C 1.53189 * 108.89546 * 233.51614 * 11 10 8 13 13 C 1.53069 * 109.29706 * 305.57712 * 12 11 10 14 14 N 1.46500 * 109.44479 * 181.23439 * 13 12 11 15 15 C 1.36941 * 119.99593 * 84.79601 * 14 13 12 16 16 H 1.07991 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99237 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00358 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99495 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47094 * 89.99370 * 19 17 15 21 21 H 1.48502 * 109.47097 * 209.99735 * 19 17 15 22 22 H 1.48499 * 109.47028 * 329.99452 * 19 17 15 23 23 C 1.53038 * 109.65733 * 61.14868 * 13 12 11 24 24 C 1.46932 * 120.63372 * 356.01656 * 10 8 7 25 25 H 1.09007 * 109.46535 * 270.17970 * 1 2 3 26 26 H 1.08997 * 109.47072 * 30.17592 * 1 2 3 27 27 H 1.08994 * 109.47220 * 150.17984 * 1 2 3 28 28 H 1.08001 * 126.07069 * 0.02562 * 3 2 1 29 29 H 1.08001 * 125.56038 * 179.72521 * 4 3 2 30 30 H 1.09004 * 109.58141 * 353.37868 * 11 10 8 31 31 H 1.08999 * 109.58498 * 113.65300 * 11 10 8 32 32 H 1.09001 * 109.49854 * 65.38274 * 12 11 10 33 33 H 1.08998 * 109.49965 * 185.47701 * 12 11 10 34 34 H 1.09000 * 109.34568 * 301.12691 * 13 12 11 35 35 H 0.96999 * 119.99651 * 264.79649 * 14 13 12 36 36 H 0.97002 * 119.99842 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.49742 * 178.75184 * 23 13 12 38 38 H 1.09000 * 109.52538 * 58.67381 * 23 13 12 39 39 H 1.08995 * 109.58575 * 246.20213 * 24 10 8 40 40 H 1.09007 * 109.58236 * 6.48172 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6929 -0.0061 5 7 3.6284 -0.6624 -0.0041 6 1 4.4191 -1.2243 -0.0070 7 6 2.3263 -1.1089 0.0039 8 6 1.8899 -2.5092 0.0079 9 8 0.9518 -2.8561 -0.6852 10 7 2.5279 -3.4116 0.7793 11 6 2.0493 -4.7984 0.8607 12 6 1.8468 -5.1677 2.3336 13 6 3.1416 -4.9002 3.1048 14 7 2.9607 -5.2799 4.5081 15 6 3.1482 -6.5800 4.8952 16 1 3.4290 -7.3254 4.1660 17 6 2.9763 -6.9399 6.2248 18 7 2.6336 -6.0315 7.1134 19 14 3.2313 -8.7135 6.7528 20 1 4.6507 -8.9155 7.1399 21 1 2.3541 -9.0159 7.9123 22 1 2.8919 -9.6191 5.6259 23 6 3.4934 -3.4132 3.0203 24 6 3.7155 -3.0276 1.5545 25 1 -0.3633 0.0032 1.0278 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5110 28 1 2.0137 2.1549 0.0004 29 1 4.4972 1.3253 -0.0118 30 1 1.1031 -4.8903 0.3274 31 1 2.7865 -5.4661 0.4146 32 1 1.0438 -4.5617 2.7534 33 1 1.5856 -6.2230 2.4115 34 1 3.9490 -5.4896 2.6703 35 1 2.7081 -4.6104 5.1630 36 1 2.5138 -6.2830 8.0426 37 1 4.4036 -3.2218 3.5887 38 1 2.6760 -2.8215 3.4323 39 1 4.5896 -3.5511 1.1673 40 1 3.8701 -1.9513 1.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991926373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = 3.537686 kcal Electronic energy + Delta-G solvation = -21710.781391 eV Core-core repulsion = 18525.609206 eV Total energy + Delta-G solvation = -3185.172185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.46669 -40.58439 -38.71283 -36.23222 -33.99378 -33.45055 -32.37837 -31.24921 -30.24593 -27.99875 -26.53279 -24.74229 -24.27323 -22.74394 -21.79511 -20.98946 -19.85796 -19.30953 -18.69373 -17.59587 -16.73719 -16.58760 -16.33795 -15.53048 -15.44527 -15.23512 -15.03093 -14.80653 -14.46790 -14.32212 -14.01861 -13.74232 -13.70601 -13.26545 -13.19367 -13.08815 -12.84998 -12.65653 -12.51203 -12.24864 -12.18965 -11.98497 -11.71601 -11.46893 -11.06820 -10.91219 -9.83045 -9.64693 -9.05120 -9.03015 -7.94884 -5.23783 0.59673 1.47494 1.48664 1.56904 1.69003 1.86272 2.03564 2.47833 2.56498 3.38354 3.53795 3.76348 3.78401 4.07637 4.09354 4.21855 4.29273 4.32338 4.32627 4.43327 4.53928 4.64111 4.77184 4.79475 4.83918 4.86385 4.91736 5.02667 5.08227 5.15397 5.25183 5.42929 5.45348 5.51330 5.53017 5.84472 6.00473 6.26858 6.31117 6.60467 7.01121 7.33224 8.08390 8.31271 9.28688 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.003819 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.609198 B = 7329.247185 C = 7556.110345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.107 4.107 3 C -0.226 4.226 4 C 0.042 3.958 5 N -0.530 5.530 6 H 0.431 0.569 7 C -0.079 4.079 8 C 0.586 3.414 9 O -0.573 6.573 10 N -0.602 5.602 11 C 0.122 3.878 12 C -0.138 4.138 13 C 0.174 3.826 14 N -0.737 5.737 15 C -0.238 4.238 16 H 0.078 0.922 17 C -0.075 4.075 18 N -0.971 5.971 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.270 1.270 23 C -0.128 4.128 24 C 0.106 3.894 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.160 0.840 29 H 0.215 0.785 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 14.217 -16.097 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.249 4.249 4 C -0.094 4.094 5 N -0.130 5.130 6 H 0.273 0.727 7 C -0.192 4.192 8 C 0.375 3.625 9 O -0.452 6.452 10 N -0.334 5.334 11 C -0.001 4.001 12 C -0.179 4.179 13 C 0.066 3.934 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.096 0.904 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.226 1.226 22 H -0.195 1.195 23 C -0.167 4.167 24 C -0.017 4.017 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.177 0.823 29 H 0.232 0.768 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.994 13.669 -16.473 21.980 hybrid contribution -0.120 -1.168 1.130 1.630 sum 4.874 12.500 -15.343 20.382 Atomic orbital electron populations 1.20299 0.90112 1.02756 1.01797 1.20183 0.96014 0.91976 1.03444 1.21068 0.92253 0.98892 1.12699 1.22697 1.00402 0.82597 1.03725 1.42312 1.06235 1.07982 1.56475 0.72732 1.19856 0.85693 0.92329 1.21295 1.17525 0.81917 0.83984 0.79031 1.90764 1.30911 1.79922 1.43650 1.48194 1.29790 1.10478 1.44946 1.21571 1.00956 0.81221 0.96314 1.22466 1.00005 1.00909 0.94558 1.20415 0.94544 0.94116 0.84345 1.42650 1.83014 1.07357 1.04626 1.19631 1.37366 0.87263 0.92755 0.90403 1.25530 1.03360 1.01446 0.96392 1.69815 1.56167 1.34199 1.01985 0.85188 0.77145 0.80293 0.77438 1.21269 1.22579 1.19452 1.22040 1.02199 0.95901 0.96555 1.22154 0.87206 1.02263 0.90073 0.91954 0.89709 0.93022 0.82262 0.76839 0.90424 0.89453 0.94438 0.92006 0.92776 0.79772 0.94118 0.89781 0.93303 0.88177 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 10.19 71.24 0.73 -1.53 16 2 C -0.11 -2.63 6.20 -19.56 -0.12 -2.76 16 3 C -0.23 -3.98 10.76 22.01 0.24 -3.75 16 4 C 0.04 0.53 11.89 83.48 0.99 1.52 16 5 N -0.53 -8.42 4.64 -183.63 -0.85 -9.27 16 6 H 0.43 4.44 7.41 -92.70 -0.69 3.76 16 7 C -0.08 -1.98 6.07 40.35 0.24 -1.74 16 8 C 0.59 17.84 7.44 86.45 0.64 18.48 16 9 O -0.57 -21.43 15.12 -4.32 -0.07 -21.50 16 10 N -0.60 -16.44 2.97 -823.60 -2.45 -18.89 16 11 C 0.12 3.60 6.42 86.36 0.55 4.15 16 12 C -0.14 -4.94 5.67 30.68 0.17 -4.77 16 13 C 0.17 6.46 2.73 45.03 0.12 6.58 16 14 N -0.74 -36.24 5.12 -322.77 -1.65 -37.89 16 15 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 16 H 0.08 4.02 7.83 -2.92 -0.02 4.00 16 17 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.13 -3.78 5.55 30.67 0.17 -3.61 16 24 C 0.11 2.29 5.78 86.36 0.50 2.79 16 25 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.50 6.74 -2.39 -0.02 1.48 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.08 2.47 7.03 -2.39 -0.02 2.45 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 35 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.81 4.34 -2.38 -0.01 1.80 16 Total: -1.00 -72.92 324.69 2.49 -70.44 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.35 Total: 28.83 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.54 Total: -0.49 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -4.67 Total: -124.91 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.92 2.49 -70.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991926373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.975 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds