Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.88993 * 2 1 4 4 C 1.55133 * 111.19467 * 236.06723 * 2 1 3 5 5 N 1.47426 * 104.72113 * 279.19513 * 4 2 1 6 6 C 1.34781 * 125.64755 * 155.81427 * 5 4 2 7 7 O 1.21697 * 119.99708 * 359.71632 * 6 5 4 8 8 C 1.46678 * 119.99795 * 179.71029 * 6 5 4 9 9 C 1.37871 * 126.22782 * 179.97438 * 8 6 5 10 10 C 1.39834 * 107.08165 * 180.02562 * 9 8 6 11 11 C 1.35452 * 107.86685 * 0.02562 * 10 9 8 12 12 N 1.35535 * 108.86987 * 359.97438 * 11 10 9 13 13 H 0.97003 * 125.67591 * 180.02562 * 12 11 10 14 14 C 1.47017 * 108.70260 * 335.55114 * 5 4 2 15 15 C 1.54321 * 107.27482 * 1.28781 * 14 5 4 16 16 H 1.08995 * 110.72140 * 140.73538 * 15 14 5 17 17 N 1.46506 * 110.72080 * 263.83151 * 15 14 5 18 18 C 1.36930 * 120.00045 * 273.54200 * 17 15 14 19 19 H 1.08002 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00255 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99715 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47130 * 89.99390 * 22 20 18 24 24 H 1.48500 * 109.47029 * 209.99709 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00137 * 22 20 18 26 26 H 1.08996 * 109.47026 * 296.12001 * 1 2 3 27 27 H 1.09001 * 109.47024 * 56.11950 * 1 2 3 28 28 H 1.08999 * 109.47159 * 176.11803 * 1 2 3 29 29 H 1.08993 * 109.47338 * 183.87866 * 3 2 1 30 30 H 1.09000 * 109.46891 * 303.88201 * 3 2 1 31 31 H 1.09003 * 109.46878 * 63.87597 * 3 2 1 32 32 H 1.08994 * 110.49832 * 160.34870 * 4 2 1 33 33 H 1.08998 * 110.33987 * 37.95621 * 4 2 1 34 34 H 1.07994 * 126.46177 * 0.04932 * 9 8 6 35 35 H 1.08002 * 126.07015 * 179.97438 * 10 9 8 36 36 H 1.08006 * 125.56278 * 180.26333 * 11 10 9 37 37 H 1.09004 * 109.88476 * 120.71048 * 14 5 4 38 38 H 1.09010 * 109.87996 * 241.71423 * 14 5 4 39 39 H 0.96999 * 119.99774 * 93.54259 * 17 15 14 40 40 H 0.96995 * 119.99505 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0909 -0.8074 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 1.9419 -3.1242 -2.7993 8 6 1.8806 -4.6370 -1.0314 9 6 1.8086 -5.8133 -1.7469 10 6 1.7627 -6.8571 -0.8175 11 6 1.8059 -6.3123 0.4218 12 7 1.8779 -4.9639 0.3057 13 1 1.9205 -4.3341 1.0422 14 6 2.0284 -2.2644 0.6968 15 6 2.0861 -0.8075 1.2026 16 1 1.4548 -0.6792 2.0817 17 7 3.4667 -0.4151 1.4964 18 6 4.0065 -0.6796 2.7267 19 1 3.4146 -1.1778 3.4803 20 6 5.3148 -0.3082 3.0051 21 7 5.8338 -0.5629 4.1875 22 14 6.3387 0.5529 1.7014 23 1 6.1587 2.0221 1.8211 24 1 7.7714 0.2125 1.8925 25 1 5.8997 0.1088 0.3540 26 1 -0.3633 0.4524 0.9227 27 1 -0.3633 0.5729 -0.8532 28 1 -0.3633 -1.0253 -0.0696 29 1 3.1630 1.4033 -0.0695 30 1 1.6698 1.9731 -0.8532 31 1 1.7823 1.9302 0.9227 32 1 3.1253 -0.5271 -1.3986 33 1 1.4765 -0.6457 -2.0858 34 1 1.7914 -5.9103 -2.8223 35 1 1.7025 -7.9107 -1.0472 36 1 1.7906 -6.8629 1.3509 37 1 1.1217 -2.7476 1.0609 38 1 2.9048 -2.8137 1.0410 39 1 3.9983 0.0320 0.8195 40 1 6.7479 -0.3030 4.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995443568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = 35.004442 kcal Electronic energy + Delta-G solvation = -22345.613107 eV Core-core repulsion = 19161.805423 eV Total energy + Delta-G solvation = -3183.807684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29583 -39.74367 -37.82878 -34.21775 -33.47412 -31.24953 -30.94417 -29.36962 -28.46572 -27.01065 -26.28652 -24.01854 -22.25288 -21.07698 -20.56911 -19.94683 -19.19619 -17.70396 -17.37463 -16.10407 -15.95042 -15.12218 -14.71300 -14.56547 -14.19323 -13.96049 -13.68852 -13.36244 -13.04590 -12.84208 -12.69862 -12.56106 -12.32018 -12.19914 -12.16725 -11.92390 -11.75433 -11.38902 -11.08943 -10.76425 -10.67020 -10.39101 -10.06806 -9.91951 -9.72674 -9.15065 -8.96399 -8.54630 -8.11644 -7.50236 -5.95138 -3.33057 1.59730 2.80732 3.05561 3.26032 3.28894 3.33078 3.35470 3.55160 4.43515 4.46662 4.80029 4.86330 4.95558 5.10711 5.14240 5.35071 5.38914 5.39707 5.46555 5.51098 5.69420 5.73680 5.80809 5.90349 5.94632 6.03593 6.06785 6.10899 6.12957 6.18314 6.31031 6.40601 6.49039 6.57886 6.79283 6.99970 7.44158 7.66985 7.77709 8.23408 8.29517 8.99844 9.72643 9.90748 11.22209 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.006395 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.757288 B = 4377.559648 C = 5266.674865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.600 3.400 7 O -0.543 6.543 8 C -0.047 4.047 9 C -0.115 4.115 10 C -0.216 4.216 11 C 0.017 3.983 12 N -0.538 5.538 13 H 0.422 0.578 14 C 0.059 3.941 15 C 0.188 3.812 16 H 0.082 0.918 17 N -0.735 5.735 18 C -0.256 4.256 19 H 0.092 0.908 20 C 0.014 3.986 21 N -0.926 5.926 22 Si 0.879 3.121 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.277 1.277 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.365 0.635 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 -4.913 -7.325 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.002 4.002 5 N -0.341 5.341 6 C 0.391 3.609 7 O -0.421 6.421 8 C -0.161 4.161 9 C -0.142 4.142 10 C -0.240 4.240 11 C -0.120 4.120 12 N -0.138 5.138 13 H 0.265 0.735 14 C -0.067 4.067 15 C 0.076 3.924 16 H 0.099 0.901 17 N -0.378 5.378 18 C -0.386 4.386 19 H 0.110 0.890 20 C -0.183 4.183 21 N -0.573 5.573 22 Si 0.709 3.291 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.203 1.203 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.199 0.801 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.900 -4.777 -7.623 14.133 hybrid contribution 1.048 0.632 -0.339 1.270 sum -9.852 -4.145 -7.962 13.328 Atomic orbital electron populations 1.21671 0.93360 1.01731 1.01942 1.22091 0.95861 0.95933 0.95368 1.21601 1.01203 0.93873 1.01828 1.22337 1.00959 0.79607 0.97301 1.48315 1.72199 1.06293 1.07284 1.16758 0.76643 0.82026 0.85513 1.90800 1.52305 1.85422 1.13567 1.20394 1.17904 0.94408 0.83371 1.21251 1.03470 0.90015 0.99418 1.20850 1.12127 0.99212 0.91815 1.22090 1.06771 0.82997 1.00113 1.42852 1.55354 1.08073 1.07561 0.73466 1.23405 1.00229 1.03644 0.79430 1.21150 0.87875 0.88542 0.94866 0.90053 1.42817 1.09468 1.71041 1.14440 1.19010 0.96407 1.33787 0.89349 0.88992 1.24651 0.96902 1.00448 0.96312 1.69684 1.15377 1.51597 1.20618 0.86653 0.80523 0.80141 0.81822 1.20708 1.21533 1.20327 0.91991 0.92501 0.92744 0.92248 0.92971 0.91491 0.91461 0.90583 0.83782 0.84159 0.81329 0.92551 0.90225 0.80050 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.59 37.16 0.32 -1.20 16 2 C -0.09 -1.28 0.83 -152.24 -0.13 -1.41 16 3 C -0.13 -1.76 8.22 37.16 0.31 -1.45 16 4 C 0.12 1.87 5.82 -2.41 -0.01 1.86 16 5 N -0.61 -9.94 3.31 -171.92 -0.57 -10.51 16 6 C 0.60 10.64 7.82 -12.85 -0.10 10.54 16 7 O -0.54 -10.98 17.14 5.19 0.09 -10.89 16 8 C -0.05 -0.74 6.89 -81.98 -0.56 -1.31 16 9 C -0.11 -1.66 10.65 -39.12 -0.42 -2.08 16 10 C -0.22 -2.60 10.81 -39.98 -0.43 -3.03 16 11 C 0.02 0.20 11.89 -16.91 -0.20 -0.01 16 12 N -0.54 -7.17 5.61 -9.39 -0.05 -7.22 16 13 H 0.42 5.28 4.92 -40.82 -0.20 5.08 16 14 C 0.06 0.92 4.53 -3.07 -0.01 0.91 16 15 C 0.19 3.12 2.86 -66.09 -0.19 2.93 16 16 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 17 N -0.74 -15.46 4.42 -51.65 -0.23 -15.69 16 18 C -0.26 -6.53 10.46 -15.06 -0.16 -6.68 16 19 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.01 0.38 5.50 -17.43 -0.10 0.29 16 21 N -0.93 -27.49 13.97 55.49 0.78 -26.72 16 22 Si 0.88 21.12 27.74 -169.99 -4.71 16.40 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 29 H 0.06 0.92 6.38 -51.93 -0.33 0.59 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 33 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.17 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.06 0.74 7.09 -51.93 -0.37 0.37 16 38 H 0.08 1.38 7.13 -51.92 -0.37 1.01 16 39 H 0.36 7.80 3.96 -40.82 -0.16 7.64 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -31.29 322.27 -7.17 -38.46 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.64 Total: 11.97 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.69 Total: -0.65 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.07 Total: -60.14 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.29 -7.17 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995443568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.465 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds