Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.88993 * 2 1 4 4 C 1.55133 * 111.19467 * 236.06723 * 2 1 3 5 5 N 1.47426 * 104.72113 * 279.19513 * 4 2 1 6 6 C 1.34781 * 125.64755 * 155.81427 * 5 4 2 7 7 O 1.21697 * 119.99708 * 359.71632 * 6 5 4 8 8 C 1.46678 * 119.99795 * 179.71029 * 6 5 4 9 9 C 1.37871 * 126.22782 * 179.97438 * 8 6 5 10 10 C 1.39834 * 107.08165 * 180.02562 * 9 8 6 11 11 C 1.35452 * 107.86685 * 0.02562 * 10 9 8 12 12 N 1.35535 * 108.86987 * 359.97438 * 11 10 9 13 13 H 0.97003 * 125.67591 * 180.02562 * 12 11 10 14 14 C 1.47017 * 108.70260 * 335.55114 * 5 4 2 15 15 C 1.54321 * 107.27482 * 1.28781 * 14 5 4 16 16 H 1.08995 * 110.72140 * 140.73538 * 15 14 5 17 17 N 1.46506 * 110.72080 * 263.83151 * 15 14 5 18 18 C 1.36930 * 120.00045 * 273.54200 * 17 15 14 19 19 H 1.08002 * 119.99709 * 0.02562 * 18 17 15 20 20 C 1.38817 * 120.00255 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99715 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47130 * 89.99390 * 22 20 18 24 24 H 1.48500 * 109.47029 * 209.99709 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00137 * 22 20 18 26 26 H 1.08996 * 109.47026 * 296.12001 * 1 2 3 27 27 H 1.09001 * 109.47024 * 56.11950 * 1 2 3 28 28 H 1.08999 * 109.47159 * 176.11803 * 1 2 3 29 29 H 1.08993 * 109.47338 * 183.87866 * 3 2 1 30 30 H 1.09000 * 109.46891 * 303.88201 * 3 2 1 31 31 H 1.09003 * 109.46878 * 63.87597 * 3 2 1 32 32 H 1.08994 * 110.49832 * 160.34870 * 4 2 1 33 33 H 1.08998 * 110.33987 * 37.95621 * 4 2 1 34 34 H 1.07994 * 126.46177 * 0.04932 * 9 8 6 35 35 H 1.08002 * 126.07015 * 179.97438 * 10 9 8 36 36 H 1.08006 * 125.56278 * 180.26333 * 11 10 9 37 37 H 1.09004 * 109.88476 * 120.71048 * 14 5 4 38 38 H 1.09010 * 109.87996 * 241.71423 * 14 5 4 39 39 H 0.96999 * 119.99774 * 93.54259 * 17 15 14 40 40 H 0.96995 * 119.99505 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0909 -0.8074 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 1.9419 -3.1242 -2.7993 8 6 1.8806 -4.6370 -1.0314 9 6 1.8086 -5.8133 -1.7469 10 6 1.7627 -6.8571 -0.8175 11 6 1.8059 -6.3123 0.4218 12 7 1.8779 -4.9639 0.3057 13 1 1.9205 -4.3341 1.0422 14 6 2.0284 -2.2644 0.6968 15 6 2.0861 -0.8075 1.2026 16 1 1.4548 -0.6792 2.0817 17 7 3.4667 -0.4151 1.4964 18 6 4.0065 -0.6796 2.7267 19 1 3.4146 -1.1778 3.4803 20 6 5.3148 -0.3082 3.0051 21 7 5.8338 -0.5629 4.1875 22 14 6.3387 0.5529 1.7014 23 1 6.1587 2.0221 1.8211 24 1 7.7714 0.2125 1.8925 25 1 5.8997 0.1088 0.3540 26 1 -0.3633 0.4524 0.9227 27 1 -0.3633 0.5729 -0.8532 28 1 -0.3633 -1.0253 -0.0696 29 1 3.1630 1.4033 -0.0695 30 1 1.6698 1.9731 -0.8532 31 1 1.7823 1.9302 0.9227 32 1 3.1253 -0.5271 -1.3986 33 1 1.4765 -0.6457 -2.0858 34 1 1.7914 -5.9103 -2.8223 35 1 1.7025 -7.9107 -1.0472 36 1 1.7906 -6.8629 1.3509 37 1 1.1217 -2.7476 1.0609 38 1 2.9048 -2.8137 1.0410 39 1 3.9983 0.0320 0.8195 40 1 6.7479 -0.3030 4.3820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995443568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = 14.664305 kcal Electronic energy + Delta-G solvation = -22346.495121 eV Core-core repulsion = 19161.805423 eV Total energy + Delta-G solvation = -3184.689699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40100 -40.97292 -39.19402 -35.91806 -34.81071 -33.09772 -31.99961 -30.47033 -29.87897 -28.14631 -27.45416 -25.67815 -23.66359 -22.38566 -21.60506 -21.03966 -20.61193 -19.45313 -18.57115 -17.45461 -17.26022 -16.57302 -16.23287 -16.03067 -15.41746 -15.23263 -14.94121 -14.54445 -14.49503 -14.37755 -13.88488 -13.69561 -13.63415 -13.45765 -13.29034 -13.17061 -12.94280 -12.84187 -12.77808 -12.29911 -12.00066 -11.93824 -11.65673 -11.40513 -11.26510 -11.03349 -10.02546 -9.83797 -9.39156 -9.17600 -8.05190 -5.38153 0.43372 1.34327 1.35313 1.41410 1.80274 1.84290 2.27433 2.31421 2.43874 3.23337 3.26310 3.44110 3.65707 3.72512 3.91787 4.15000 4.26819 4.30826 4.37496 4.42289 4.48336 4.53860 4.62985 4.73626 4.84206 4.87998 4.98810 5.02802 5.06931 5.14252 5.20923 5.27694 5.34275 5.46251 5.75626 5.77113 5.96053 6.18875 6.35709 6.48267 6.97074 7.04047 7.79314 7.96563 9.15383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.006395 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.757288 B = 4377.559648 C = 5266.674865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.608 5.608 6 C 0.595 3.405 7 O -0.579 6.579 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.221 4.221 11 C 0.034 3.966 12 N -0.539 5.539 13 H 0.424 0.576 14 C 0.069 3.931 15 C 0.177 3.823 16 H 0.090 0.910 17 N -0.739 5.739 18 C -0.224 4.224 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.976 5.976 22 Si 0.935 3.065 23 H -0.274 1.274 24 H -0.302 1.302 25 H -0.265 1.265 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.209 0.791 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.364 0.636 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -5.430 -7.826 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.185 4.185 4 C -0.006 4.006 5 N -0.340 5.340 6 C 0.387 3.613 7 O -0.460 6.460 8 C -0.198 4.198 9 C -0.149 4.149 10 C -0.244 4.244 11 C -0.104 4.104 12 N -0.139 5.139 13 H 0.267 0.733 14 C -0.056 4.056 15 C 0.067 3.933 16 H 0.108 0.892 17 N -0.381 5.381 18 C -0.355 4.355 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.626 5.626 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.229 1.229 25 H -0.190 1.190 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.226 0.774 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.199 0.801 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.628 -5.284 -8.153 15.933 hybrid contribution 1.455 0.677 -0.178 1.615 sum -11.174 -4.607 -8.331 14.679 Atomic orbital electron populations 1.21647 0.90953 1.02118 1.03398 1.22056 0.97516 0.95433 0.92838 1.21610 0.99992 0.93855 1.03033 1.22415 1.00323 0.79557 0.98335 1.48359 1.71719 1.06443 1.07439 1.17091 0.76051 0.82955 0.85225 1.90762 1.54261 1.86067 1.14955 1.20253 1.21066 0.93746 0.84691 1.21508 1.02882 0.90645 0.99913 1.21215 1.11722 1.00092 0.91383 1.22828 1.03779 0.82161 1.01590 1.42864 1.55357 1.08996 1.06679 0.73252 1.23225 1.00833 1.02538 0.79035 1.21428 0.85709 0.89658 0.96461 0.89244 1.42827 1.11256 1.71183 1.12859 1.19032 0.95664 1.30581 0.90174 0.90901 1.25276 0.98480 1.02627 0.98014 1.69829 1.15542 1.54470 1.22803 0.85722 0.78263 0.79431 0.80180 1.20019 1.22878 1.19002 0.90722 0.90864 0.92945 0.94243 0.90379 0.91471 0.93070 0.89937 0.84010 0.81421 0.77431 0.89626 0.92136 0.80126 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.59 71.98 0.62 -1.89 16 2 C -0.08 -2.00 0.83 -50.71 -0.04 -2.05 16 3 C -0.13 -3.23 8.22 71.98 0.59 -2.64 16 4 C 0.12 3.48 5.82 86.93 0.51 3.98 16 5 N -0.61 -19.37 3.31 -816.04 -2.70 -22.07 16 6 C 0.59 20.97 7.82 86.45 0.68 21.65 16 7 O -0.58 -23.71 17.14 -4.34 -0.07 -23.78 16 8 C -0.08 -2.60 6.89 40.35 0.28 -2.32 16 9 C -0.12 -3.41 10.65 22.57 0.24 -3.17 16 10 C -0.22 -4.71 10.81 22.01 0.24 -4.48 16 11 C 0.03 0.66 11.89 83.48 0.99 1.65 16 12 N -0.54 -13.32 5.61 -183.62 -1.03 -14.35 16 13 H 0.42 9.83 4.92 -92.71 -0.46 9.37 16 14 C 0.07 2.06 4.53 86.73 0.39 2.45 16 15 C 0.18 5.62 2.86 46.18 0.13 5.75 16 16 H 0.09 2.74 8.03 -2.39 -0.02 2.72 16 17 N -0.74 -30.42 4.42 -317.32 -1.40 -31.82 16 18 C -0.22 -11.39 10.46 84.04 0.88 -10.51 16 19 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 20 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 21 N -0.98 -59.24 13.97 21.65 0.30 -58.94 16 22 Si 0.94 44.03 27.74 68.60 1.90 45.93 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.26 -11.70 6.52 99.48 0.65 -11.06 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.10 7.91 -2.39 -0.02 1.08 16 29 H 0.04 1.16 6.38 -2.39 -0.02 1.14 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.69 7.99 -2.39 -0.02 1.67 16 33 H 0.08 2.37 7.95 -2.39 -0.02 2.35 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.09 2.06 7.09 -2.39 -0.02 2.04 16 38 H 0.06 2.06 7.13 -2.38 -0.02 2.04 16 39 H 0.36 15.22 3.96 -92.71 -0.37 14.86 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -68.92 322.27 3.14 -65.78 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.17 Total: 33.22 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.97 Total: 6.04 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -4.83 Total: -127.19 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -68.92 3.14 -65.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995443568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.449 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds