Wall clock time and date at job start Mon Mar 30 2020 02:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.88484 * 2 1 4 4 C 1.55134 * 111.19172 * 236.06983 * 2 1 3 5 5 N 1.47423 * 104.71999 * 279.19186 * 4 2 1 6 6 C 1.34783 * 125.64379 * 155.81982 * 5 4 2 7 7 O 1.21695 * 120.00227 * 359.71520 * 6 5 4 8 8 C 1.46681 * 119.99436 * 179.71350 * 6 5 4 9 9 C 1.37877 * 126.22976 * 180.02562 * 8 6 5 10 10 C 1.39828 * 107.08388 * 179.72578 * 9 8 6 11 11 C 1.35452 * 107.86747 * 0.41582 * 10 9 8 12 12 N 1.35535 * 108.86977 * 359.57414 * 11 10 9 13 13 H 0.97002 * 125.67831 * 180.28608 * 12 11 10 14 14 C 1.47017 * 108.70325 * 335.54936 * 5 4 2 15 15 C 1.54317 * 107.27451 * 1.29437 * 14 5 4 16 16 H 1.09004 * 110.71742 * 263.82645 * 15 14 5 17 17 N 1.46490 * 110.72556 * 140.55422 * 15 14 5 18 18 C 1.36938 * 120.00472 * 86.44998 * 17 15 14 19 19 H 1.07999 * 119.99491 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00474 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99649 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47351 * 59.99676 * 22 20 18 24 24 H 1.48499 * 109.47303 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46976 * 299.99536 * 22 20 18 26 26 H 1.09005 * 109.47389 * 296.11607 * 1 2 3 27 27 H 1.08997 * 109.47291 * 56.11553 * 1 2 3 28 28 H 1.09000 * 109.47532 * 176.11800 * 1 2 3 29 29 H 1.09002 * 109.47063 * 183.87869 * 3 2 1 30 30 H 1.08996 * 109.47677 * 303.88420 * 3 2 1 31 31 H 1.09000 * 109.46844 * 63.88719 * 3 2 1 32 32 H 1.08996 * 110.49560 * 160.34744 * 4 2 1 33 33 H 1.09002 * 110.33811 * 37.95394 * 4 2 1 34 34 H 1.08002 * 126.45587 * 0.02562 * 9 8 6 35 35 H 1.08007 * 126.07028 * 180.27296 * 10 9 8 36 36 H 1.08002 * 125.56918 * 179.84904 * 11 10 9 37 37 H 1.09009 * 109.87731 * 120.70920 * 14 5 4 38 38 H 1.08994 * 109.88681 * 241.86949 * 14 5 4 39 39 H 0.97005 * 120.00100 * 266.45521 * 17 15 14 40 40 H 0.97006 * 119.99392 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2161 -0.7726 6 6 1.9470 -3.2834 -1.5930 7 8 1.9419 -3.1242 -2.7995 8 6 1.8806 -4.6369 -1.0315 9 6 1.8096 -5.8133 -1.7470 10 6 1.7702 -6.8575 -0.8178 11 6 1.8074 -6.3124 0.4216 12 7 1.8783 -4.9639 0.3055 13 1 1.9206 -4.3341 1.0421 14 6 2.0285 -2.2644 0.6967 15 6 2.0861 -0.8076 1.2025 16 1 3.1133 -0.5155 1.4211 17 7 1.2343 -0.6341 2.3816 18 6 1.7296 -0.9030 3.6297 19 1 2.7484 -1.2425 3.7446 20 6 0.9224 -0.7392 4.7470 21 7 -0.3190 -0.3249 4.6069 22 14 1.5984 -1.1053 6.4494 23 1 2.7654 -0.2271 6.7181 24 1 0.5450 -0.8525 7.4652 25 1 2.0222 -2.5268 6.5185 26 1 -0.3634 0.4524 0.9228 27 1 -0.3634 0.5729 -0.8531 28 1 -0.3634 -1.0253 -0.0696 29 1 3.1629 1.4034 -0.0695 30 1 1.6697 1.9732 -0.8531 31 1 1.7823 1.9301 0.9228 32 1 3.1252 -0.5271 -1.3986 33 1 1.4763 -0.6456 -2.0858 34 1 1.7930 -5.9103 -2.8225 35 1 1.7170 -7.9115 -1.0476 36 1 1.7885 -6.8627 1.3507 37 1 1.1218 -2.7476 1.0608 38 1 2.9063 -2.8112 1.0410 39 1 0.3194 -0.3289 2.2784 40 1 -0.8830 -0.2100 5.3877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995443571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:06 Heat of formation + Delta-G solvation = 31.047547 kcal Electronic energy + Delta-G solvation = -22203.497155 eV Core-core repulsion = 19019.517887 eV Total energy + Delta-G solvation = -3183.979268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25416 -39.63133 -37.76303 -34.27225 -33.34156 -31.07662 -30.80047 -29.34319 -27.72710 -27.07148 -26.23099 -24.17350 -22.47105 -20.94743 -20.52040 -19.90161 -18.85340 -17.39863 -17.30881 -16.09229 -15.95727 -15.00163 -14.79356 -14.29323 -14.10948 -13.83729 -13.67347 -13.35413 -13.14236 -12.77443 -12.64443 -12.49952 -12.28756 -12.20613 -12.06184 -11.61097 -11.34688 -11.15180 -10.99559 -10.67249 -10.58963 -10.35732 -10.05072 -9.89897 -9.75186 -9.12321 -8.93542 -8.52051 -8.08905 -7.22854 -5.97395 -3.28969 1.62341 2.83487 3.07799 3.30125 3.35486 3.37177 3.37806 3.56873 4.40625 4.59888 4.91294 4.96633 5.11238 5.16153 5.38352 5.42012 5.45215 5.50332 5.54464 5.63511 5.76050 5.88558 5.94674 5.97886 6.03384 6.14571 6.16750 6.22187 6.28621 6.32014 6.48301 6.51064 6.65375 6.77315 6.82557 7.03311 7.48335 7.50275 7.69124 8.20414 8.31369 9.32772 9.85983 10.21190 11.24216 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.006195 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.230481 B = 4518.711642 C = 5980.728742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.612 5.612 6 C 0.600 3.400 7 O -0.543 6.543 8 C -0.049 4.049 9 C -0.115 4.115 10 C -0.217 4.217 11 C 0.018 3.982 12 N -0.538 5.538 13 H 0.424 0.576 14 C 0.061 3.939 15 C 0.183 3.817 16 H 0.069 0.931 17 N -0.710 5.710 18 C -0.256 4.256 19 H 0.071 0.929 20 C -0.004 4.004 21 N -0.927 5.927 22 Si 0.908 3.092 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.391 0.609 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -5.223 -8.454 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.390 3.610 7 O -0.422 6.422 8 C -0.163 4.163 9 C -0.142 4.142 10 C -0.241 4.241 11 C -0.119 4.119 12 N -0.138 5.138 13 H 0.268 0.732 14 C -0.065 4.065 15 C 0.070 3.930 16 H 0.087 0.913 17 N -0.353 5.353 18 C -0.387 4.387 19 H 0.089 0.911 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.738 3.262 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.186 0.814 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.228 0.772 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.164 -5.040 -8.818 10.977 hybrid contribution 0.047 -0.086 1.495 1.498 sum 4.212 -5.126 -7.323 9.881 Atomic orbital electron populations 1.21653 0.93462 1.01838 1.02077 1.22020 0.96574 0.95461 0.94621 1.21645 1.00271 0.94459 1.02294 1.22371 1.00711 0.79531 0.97735 1.48383 1.72262 1.06343 1.07507 1.16778 0.76612 0.82065 0.85509 1.90796 1.52332 1.85470 1.13571 1.20409 1.18039 0.94423 0.83392 1.21246 1.03559 0.90011 0.99384 1.20845 1.12255 0.99193 0.91808 1.22101 1.06677 0.83049 1.00102 1.42914 1.55114 1.08123 1.07641 0.73225 1.23508 1.00478 1.04107 0.78450 1.21178 0.95712 0.88988 0.87104 0.91336 1.42549 1.13202 1.79213 1.00301 1.19198 0.96810 1.39001 0.83665 0.91073 1.24765 0.95934 1.01452 0.98008 1.69643 1.06569 1.51648 1.29517 0.86273 0.77797 0.78058 0.84030 1.21073 1.21572 1.21198 0.90832 0.93083 0.92836 0.92749 0.92926 0.91272 0.91447 0.90542 0.83786 0.84187 0.81373 0.90878 0.92492 0.77184 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.94 37.16 0.30 -1.81 16 2 C -0.09 -1.30 0.87 -152.24 -0.13 -1.43 16 3 C -0.13 -1.75 8.68 37.16 0.32 -1.43 16 4 C 0.12 1.78 5.85 -2.41 -0.01 1.76 16 5 N -0.61 -9.93 3.31 -171.92 -0.57 -10.50 16 6 C 0.60 10.57 7.82 -12.85 -0.10 10.47 16 7 O -0.54 -10.83 17.14 5.19 0.09 -10.74 16 8 C -0.05 -0.78 6.89 -81.98 -0.56 -1.35 16 9 C -0.12 -1.68 10.65 -39.12 -0.42 -2.10 16 10 C -0.22 -2.68 10.81 -39.98 -0.43 -3.11 16 11 C 0.02 0.21 11.89 -16.91 -0.20 0.01 16 12 N -0.54 -7.53 5.61 -9.39 -0.05 -7.58 16 13 H 0.42 5.83 4.92 -40.82 -0.20 5.63 16 14 C 0.06 1.00 4.54 -3.07 -0.01 0.98 16 15 C 0.18 3.22 2.84 -66.10 -0.19 3.04 16 16 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 17 N -0.71 -15.63 5.08 -51.66 -0.26 -15.89 16 18 C -0.26 -6.35 9.98 -15.06 -0.15 -6.50 16 19 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 20 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 21 N -0.93 -25.89 13.06 55.49 0.72 -25.17 16 22 Si 0.91 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.07 1.30 6.34 -51.93 -0.33 0.97 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 29 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 33 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.07 1.28 6.97 -51.92 -0.36 0.92 16 38 H 0.06 0.88 7.23 -51.93 -0.38 0.50 16 39 H 0.39 9.20 5.26 -40.82 -0.21 8.99 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -29.30 324.76 -7.53 -36.84 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.64 Total: 14.08 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.69 Total: -1.68 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.16 Total: -59.14 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.30 -7.53 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995443571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds