Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.88484 * 2 1 4 4 C 1.55134 * 111.19172 * 236.06983 * 2 1 3 5 5 N 1.47423 * 104.71999 * 279.19186 * 4 2 1 6 6 C 1.34783 * 125.64379 * 155.81982 * 5 4 2 7 7 O 1.21695 * 120.00227 * 359.71520 * 6 5 4 8 8 C 1.46681 * 119.99436 * 179.71350 * 6 5 4 9 9 C 1.37877 * 126.22976 * 180.02562 * 8 6 5 10 10 C 1.39828 * 107.08388 * 179.72578 * 9 8 6 11 11 C 1.35452 * 107.86747 * 0.41582 * 10 9 8 12 12 N 1.35535 * 108.86977 * 359.57414 * 11 10 9 13 13 H 0.97002 * 125.67831 * 180.28608 * 12 11 10 14 14 C 1.47017 * 108.70325 * 335.54936 * 5 4 2 15 15 C 1.54317 * 107.27451 * 1.29437 * 14 5 4 16 16 H 1.09004 * 110.71742 * 263.82645 * 15 14 5 17 17 N 1.46490 * 110.72556 * 140.55422 * 15 14 5 18 18 C 1.36938 * 120.00472 * 86.44998 * 17 15 14 19 19 H 1.07999 * 119.99491 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00474 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99649 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47351 * 59.99676 * 22 20 18 24 24 H 1.48499 * 109.47303 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46976 * 299.99536 * 22 20 18 26 26 H 1.09005 * 109.47389 * 296.11607 * 1 2 3 27 27 H 1.08997 * 109.47291 * 56.11553 * 1 2 3 28 28 H 1.09000 * 109.47532 * 176.11800 * 1 2 3 29 29 H 1.09002 * 109.47063 * 183.87869 * 3 2 1 30 30 H 1.08996 * 109.47677 * 303.88420 * 3 2 1 31 31 H 1.09000 * 109.46844 * 63.88719 * 3 2 1 32 32 H 1.08996 * 110.49560 * 160.34744 * 4 2 1 33 33 H 1.09002 * 110.33811 * 37.95394 * 4 2 1 34 34 H 1.08002 * 126.45587 * 0.02562 * 9 8 6 35 35 H 1.08007 * 126.07028 * 180.27296 * 10 9 8 36 36 H 1.08002 * 125.56918 * 179.84904 * 11 10 9 37 37 H 1.09009 * 109.87731 * 120.70920 * 14 5 4 38 38 H 1.08994 * 109.88681 * 241.86949 * 14 5 4 39 39 H 0.97005 * 120.00100 * 266.45521 * 17 15 14 40 40 H 0.97006 * 119.99392 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2161 -0.7726 6 6 1.9470 -3.2834 -1.5930 7 8 1.9419 -3.1242 -2.7995 8 6 1.8806 -4.6369 -1.0315 9 6 1.8096 -5.8133 -1.7470 10 6 1.7702 -6.8575 -0.8178 11 6 1.8074 -6.3124 0.4216 12 7 1.8783 -4.9639 0.3055 13 1 1.9206 -4.3341 1.0421 14 6 2.0285 -2.2644 0.6967 15 6 2.0861 -0.8076 1.2025 16 1 3.1133 -0.5155 1.4211 17 7 1.2343 -0.6341 2.3816 18 6 1.7296 -0.9030 3.6297 19 1 2.7484 -1.2425 3.7446 20 6 0.9224 -0.7392 4.7470 21 7 -0.3190 -0.3249 4.6069 22 14 1.5984 -1.1053 6.4494 23 1 2.7654 -0.2271 6.7181 24 1 0.5450 -0.8525 7.4652 25 1 2.0222 -2.5268 6.5185 26 1 -0.3634 0.4524 0.9228 27 1 -0.3634 0.5729 -0.8531 28 1 -0.3634 -1.0253 -0.0696 29 1 3.1629 1.4034 -0.0695 30 1 1.6697 1.9732 -0.8531 31 1 1.7823 1.9301 0.9228 32 1 3.1252 -0.5271 -1.3986 33 1 1.4763 -0.6456 -2.0858 34 1 1.7930 -5.9103 -2.8225 35 1 1.7170 -7.9115 -1.0476 36 1 1.7885 -6.8627 1.3507 37 1 1.1218 -2.7476 1.0608 38 1 2.9063 -2.8112 1.0410 39 1 0.3194 -0.3289 2.2784 40 1 -0.8830 -0.2100 5.3877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995443571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = 13.090248 kcal Electronic energy + Delta-G solvation = -22204.275842 eV Core-core repulsion = 19019.517887 eV Total energy + Delta-G solvation = -3184.757955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38382 -40.90246 -39.14785 -35.93121 -34.75161 -32.74600 -31.95413 -30.47354 -29.26642 -28.33346 -27.41028 -25.93188 -23.82614 -22.26745 -21.58191 -21.01228 -20.22549 -19.16598 -18.57488 -17.41171 -17.31697 -16.46322 -16.22902 -15.77941 -15.55793 -15.19797 -14.78609 -14.65796 -14.46903 -14.28938 -13.88125 -13.63150 -13.58687 -13.40620 -13.17555 -12.99670 -12.84193 -12.83115 -12.57935 -12.17286 -12.12496 -11.91928 -11.56280 -11.39873 -11.23414 -10.93514 -10.01828 -9.80975 -9.18213 -9.07775 -7.95174 -5.25029 0.44179 1.50077 1.51461 1.57380 1.81630 1.83187 2.27453 2.32321 2.56000 3.30465 3.35436 3.68538 3.71046 3.79481 4.10138 4.15396 4.27832 4.32830 4.33749 4.42692 4.48563 4.60808 4.65795 4.74099 4.81996 4.95566 5.01763 5.04852 5.11252 5.15136 5.20108 5.28695 5.39079 5.47673 5.53703 5.77602 5.97264 6.25328 6.35713 6.46669 6.98846 7.34528 8.05667 8.30526 9.27337 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.006195 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.230481 B = 4518.711642 C = 5980.728742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.120 3.880 5 N -0.611 5.611 6 C 0.596 3.404 7 O -0.575 6.575 8 C -0.086 4.086 9 C -0.121 4.121 10 C -0.219 4.219 11 C 0.029 3.971 12 N -0.541 5.541 13 H 0.423 0.577 14 C 0.076 3.924 15 C 0.176 3.824 16 H 0.073 0.927 17 N -0.720 5.720 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.965 5.965 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.302 1.302 25 H -0.276 1.276 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.381 0.619 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 -6.298 -8.573 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.343 5.343 6 C 0.388 3.612 7 O -0.457 6.457 8 C -0.198 4.198 9 C -0.148 4.148 10 C -0.242 4.242 11 C -0.108 4.108 12 N -0.141 5.141 13 H 0.266 0.734 14 C -0.051 4.051 15 C 0.065 3.935 16 H 0.091 0.909 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.099 0.901 20 C -0.258 4.258 21 N -0.615 5.615 22 Si 0.796 3.204 23 H -0.206 1.206 24 H -0.228 1.228 25 H -0.202 1.202 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.222 0.778 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.217 0.783 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.531 -6.120 -8.961 12.180 hybrid contribution -0.338 0.183 1.458 1.507 sum 5.193 -5.938 -7.504 10.887 Atomic orbital electron populations 1.21579 0.94081 1.00907 1.01839 1.21972 0.95990 0.96375 0.93496 1.21613 1.01270 0.93061 1.02231 1.22455 1.01705 0.78735 0.97327 1.48380 1.71870 1.06761 1.07241 1.17048 0.76066 0.82873 0.85227 1.90762 1.54123 1.86040 1.14735 1.20331 1.21003 0.93990 0.84520 1.21517 1.02849 0.90490 0.99961 1.21211 1.11608 1.00148 0.91261 1.22806 1.04132 0.82234 1.01604 1.42932 1.55308 1.08989 1.06855 0.73356 1.23201 1.00410 1.02907 0.78560 1.21358 0.95273 0.90192 0.86645 0.90903 1.42651 1.13270 1.79273 1.00882 1.19592 0.96895 1.36491 0.84646 0.90101 1.25459 0.96323 1.02776 1.01247 1.69795 1.07855 1.54181 1.29677 0.85324 0.76767 0.78209 0.80082 1.20616 1.22828 1.20234 0.92996 0.90901 0.94459 0.91260 0.90764 0.93218 0.89735 0.90488 0.83707 0.81343 0.77822 0.92224 0.91251 0.78299 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 7.94 71.98 0.57 -3.42 16 2 C -0.08 -2.26 0.87 -50.71 -0.04 -2.30 16 3 C -0.12 -3.15 8.68 71.98 0.62 -2.53 16 4 C 0.12 3.40 5.85 86.93 0.51 3.91 16 5 N -0.61 -19.35 3.31 -816.05 -2.70 -22.05 16 6 C 0.60 20.83 7.82 86.45 0.68 21.50 16 7 O -0.58 -22.99 17.14 -4.33 -0.07 -23.06 16 8 C -0.09 -2.67 6.89 40.35 0.28 -2.39 16 9 C -0.12 -3.39 10.65 22.57 0.24 -3.15 16 10 C -0.22 -4.82 10.81 22.01 0.24 -4.58 16 11 C 0.03 0.62 11.89 83.48 0.99 1.62 16 12 N -0.54 -14.32 5.61 -183.61 -1.03 -15.36 16 13 H 0.42 11.11 4.92 -92.71 -0.46 10.65 16 14 C 0.08 2.40 4.54 86.73 0.39 2.79 16 15 C 0.18 6.06 2.84 46.18 0.13 6.19 16 16 H 0.07 2.47 8.02 -2.38 -0.02 2.45 16 17 N -0.72 -31.65 5.08 -317.35 -1.61 -33.26 16 18 C -0.24 -12.01 9.98 84.03 0.84 -11.17 16 19 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 21 N -0.97 -54.96 13.06 21.65 0.28 -54.68 16 22 Si 0.97 42.62 29.55 68.60 2.03 44.64 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 H 0.05 1.87 6.34 -2.38 -0.02 1.86 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.27 7.91 -2.39 -0.02 1.25 16 29 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.14 7.99 -2.39 -0.02 2.12 16 33 H 0.08 2.21 7.95 -2.39 -0.02 2.19 16 34 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.06 2.09 6.97 -2.38 -0.02 2.07 16 38 H 0.07 2.04 7.23 -2.39 -0.02 2.02 16 39 H 0.38 18.31 5.26 -92.70 -0.49 17.82 16 40 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -63.25 324.76 2.92 -60.33 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: 0.11 Total: 39.89 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.92 Total: 3.53 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.06 Total: -125.34 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.07 Total: -23.06 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.25 2.92 -60.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995443571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.425 kcal (2) G-P(sol) polarization free energy of solvation -63.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds