Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34663 * 125.79830 * 2 1 4 4 H 0.96993 * 124.85435 * 0.02562 * 3 2 1 5 5 C 1.36449 * 110.29332 * 180.29284 * 3 2 1 6 6 C 1.34483 * 108.85856 * 359.75146 * 5 3 2 7 7 C 1.36769 * 125.80648 * 179.86789 * 2 1 3 8 8 C 1.47266 * 126.93739 * 359.97438 * 7 2 1 9 9 O 1.21620 * 120.00183 * 34.30960 * 8 7 2 10 10 N 1.34773 * 119.99687 * 214.31581 * 8 7 2 11 11 C 1.46497 * 120.00566 * 5.86469 * 10 8 7 12 12 C 1.46510 * 120.00047 * 185.86997 * 10 8 7 13 13 C 1.53776 * 113.69061 * 82.45129 * 12 10 8 14 14 C 1.53780 * 87.08249 * 89.13006 * 13 12 10 15 15 N 1.46504 * 113.61312 * 270.88128 * 14 13 12 16 16 C 1.36933 * 119.99663 * 185.70679 * 15 14 13 17 17 H 1.07996 * 120.00308 * 4.55098 * 16 15 14 18 18 C 1.38814 * 119.99699 * 184.54816 * 16 15 14 19 19 N 1.31622 * 120.00139 * 174.82284 * 18 16 15 20 20 Si 1.86798 * 120.00102 * 354.82267 * 18 16 15 21 21 H 1.48500 * 109.47260 * 95.09952 * 20 18 16 22 22 H 1.48506 * 109.47383 * 215.09881 * 20 18 16 23 23 H 1.48503 * 109.47075 * 335.10181 * 20 18 16 24 24 C 1.53772 * 113.61438 * 179.97438 * 12 10 8 25 25 H 1.08995 * 109.47322 * 270.13300 * 1 2 3 26 26 H 1.09004 * 109.47025 * 30.13882 * 1 2 3 27 27 H 1.09002 * 109.47026 * 150.13138 * 1 2 3 28 28 H 1.08002 * 125.56752 * 179.73202 * 5 3 2 29 29 H 1.08000 * 126.83370 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.47555 * 275.28032 * 11 10 8 31 31 H 1.08998 * 109.47074 * 35.27547 * 11 10 8 32 32 H 1.08994 * 109.47624 * 155.27515 * 11 10 8 33 33 H 1.09004 * 112.84212 * 311.18326 * 12 10 8 34 34 H 1.08999 * 113.61236 * 203.68228 * 13 12 10 35 35 H 1.09004 * 113.61291 * 334.57843 * 13 12 10 36 36 H 1.08992 * 113.68819 * 139.99090 * 14 13 12 37 37 H 0.96995 * 119.99854 * 5.71432 * 15 14 13 38 38 H 0.96995 * 120.00143 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61766 * 25.34838 * 24 12 10 40 40 H 1.09002 * 113.61538 * 156.25061 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0065 6 6 3.6882 -0.6150 -0.0054 7 6 2.3071 -1.1092 0.0026 8 6 1.8703 -2.5156 0.0063 9 8 0.8588 -2.8398 -0.5862 10 7 2.5913 -3.4433 0.6665 11 6 3.7355 -3.0356 1.4855 12 6 2.2309 -4.8598 0.5650 13 6 2.7786 -5.5478 -0.6965 14 6 4.0386 -5.8725 0.1230 15 7 5.0645 -4.8285 0.0605 16 6 6.2856 -5.0327 0.6455 17 1 6.5189 -5.9895 1.0886 18 6 7.2237 -4.0098 0.6688 19 7 8.3569 -4.1707 1.3188 20 14 6.8780 -2.4049 -0.2223 21 1 6.3075 -1.4213 0.7328 22 1 8.1429 -1.8699 -0.7873 23 1 5.9088 -2.6475 -1.3209 24 6 3.1502 -5.7888 1.3751 25 1 -0.3634 0.0024 1.0276 26 1 -0.3633 0.8888 -0.5160 27 1 -0.3633 -0.8912 -0.5118 28 1 4.4496 1.4061 -0.0121 29 1 4.5890 -1.2108 -0.0090 30 1 4.6194 -2.9427 0.8544 31 1 3.5222 -2.0755 1.9554 32 1 3.9163 -3.7850 2.2560 33 1 1.1692 -5.0395 0.7345 34 1 2.2116 -6.4300 -0.9937 35 1 2.9605 -4.8619 -1.5239 36 1 4.4375 -6.8695 -0.0635 37 1 4.8786 -3.9926 -0.3951 38 1 9.0125 -3.4561 1.3348 39 1 3.6323 -5.2976 2.2203 40 1 2.6850 -6.7371 1.6444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998607850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = 77.003303 kcal Electronic energy + Delta-G solvation = -22854.557473 eV Core-core repulsion = 19672.570997 eV Total energy + Delta-G solvation = -3181.986477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20660 -39.82512 -37.59546 -34.01737 -33.35172 -31.55467 -30.95182 -30.38928 -26.83590 -26.29283 -25.11747 -24.30803 -23.04370 -21.32514 -20.72138 -18.81647 -17.92803 -17.74496 -17.23799 -16.21333 -15.56760 -15.07181 -14.91384 -14.64904 -14.23490 -13.89047 -13.73888 -13.34180 -12.87265 -12.83126 -12.61021 -12.55499 -12.37004 -12.12548 -11.83743 -11.51473 -11.20306 -11.09206 -10.84103 -10.73311 -10.27205 -10.17638 -9.65255 -9.60335 -9.36740 -8.87533 -8.66422 -8.15467 -7.95157 -7.24515 -5.82925 -3.17772 1.96405 2.57242 3.14401 3.22042 3.33034 3.36977 3.55798 3.68147 4.49034 4.85226 4.92369 5.08060 5.14272 5.22296 5.30813 5.36076 5.43373 5.51242 5.66342 5.69986 5.78831 5.80650 5.93635 6.03867 6.12121 6.16032 6.21845 6.34670 6.38826 6.57984 6.60540 6.80540 6.85933 6.87948 6.99887 7.20871 7.49665 7.93380 7.97472 8.37433 8.67796 9.15468 9.87552 10.09340 11.34864 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.008457 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.660197 B = 3310.147892 C = 4673.296828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.089 3.911 3 N -0.554 5.554 4 H 0.413 0.587 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.224 4.224 8 C 0.591 3.409 9 O -0.557 6.557 10 N -0.584 5.584 11 C 0.075 3.925 12 C 0.130 3.870 13 C -0.162 4.162 14 C 0.169 3.831 15 N -0.733 5.733 16 C -0.240 4.240 17 H 0.093 0.907 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.861 3.139 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.274 1.274 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.365 0.635 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 8.767 -0.480 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 N -0.150 5.150 4 H 0.249 0.751 5 C -0.149 4.149 6 C -0.193 4.193 7 C -0.234 4.234 8 C 0.381 3.619 9 O -0.437 6.437 10 N -0.315 5.315 11 C -0.067 4.067 12 C 0.026 3.974 13 C -0.201 4.201 14 C 0.059 3.941 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.111 0.889 18 C -0.188 4.188 19 N -0.576 5.576 20 Si 0.693 3.307 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.200 1.200 24 C -0.221 4.221 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.186 0.814 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.201 0.799 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.054 8.621 -0.651 16.501 hybrid contribution 0.128 1.709 -0.608 1.818 sum -13.927 10.330 -1.260 17.385 Atomic orbital electron populations 1.20527 0.87333 1.04377 1.02965 1.20191 0.93400 0.85665 1.03544 1.41504 1.06129 1.08099 1.59258 0.75101 1.21699 0.85555 0.96425 1.11214 1.22603 0.96420 0.93893 1.06396 1.20142 0.93255 0.92204 1.17825 1.17370 0.82394 0.84094 0.78041 1.90675 1.25696 1.81897 1.45477 1.47361 1.30757 1.05612 1.47758 1.22392 0.88353 0.99941 0.96030 1.21751 0.97930 0.79966 0.97743 1.23693 0.98506 1.00530 0.97405 1.21088 0.87412 0.93058 0.92578 1.42887 1.12206 1.16180 1.66441 1.19074 0.89213 0.99617 1.29126 0.88898 1.24629 0.96655 0.97248 1.00229 1.69680 1.08834 1.33372 1.45735 0.87056 0.77260 0.85875 0.80540 1.19816 1.21810 1.20034 1.24104 0.98687 0.98370 1.00903 0.90926 0.91764 0.88129 0.81415 0.83531 0.90730 0.92691 0.89526 0.90155 0.89255 0.91632 0.92154 0.79902 0.92992 0.89660 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.20 36.00 0.37 -0.69 16 2 C 0.09 1.25 7.17 -81.88 -0.59 0.66 16 3 N -0.55 -6.30 5.90 -9.11 -0.05 -6.35 16 4 H 0.41 2.98 8.96 -40.82 -0.37 2.62 16 5 C -0.02 -0.30 11.89 -16.82 -0.20 -0.50 16 6 C -0.17 -2.96 9.07 -37.50 -0.34 -3.30 16 7 C -0.22 -3.93 5.36 -103.35 -0.55 -4.48 16 8 C 0.59 11.40 7.48 -12.59 -0.09 11.30 16 9 O -0.56 -11.47 15.35 5.26 0.08 -11.39 16 10 N -0.58 -10.93 2.72 -174.33 -0.47 -11.41 16 11 C 0.08 1.44 7.14 59.85 0.43 1.87 16 12 C 0.13 2.26 3.97 -67.12 -0.27 1.99 16 13 C -0.16 -2.82 7.57 -25.92 -0.20 -3.02 16 14 C 0.17 3.27 4.53 -67.13 -0.30 2.97 16 15 N -0.73 -16.91 3.06 -52.66 -0.16 -17.07 16 16 C -0.24 -6.46 10.34 -15.06 -0.16 -6.62 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 20 Si 0.86 20.95 23.27 -169.99 -3.95 17.00 16 21 H -0.27 -6.11 6.24 56.52 0.35 -5.76 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.27 -6.58 6.43 56.52 0.36 -6.22 16 24 C -0.18 -3.03 7.23 -25.94 -0.19 -3.22 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 1.35 6.52 -51.93 -0.34 1.01 16 28 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.15 2.88 2.76 -52.49 -0.15 2.74 16 30 H 0.07 1.59 1.49 -51.93 -0.08 1.52 16 31 H 0.05 0.99 6.59 -51.93 -0.34 0.64 16 32 H 0.09 1.66 5.31 -51.93 -0.28 1.38 16 33 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.37 8.61 4.02 -40.82 -0.16 8.45 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 1.55 5.53 -51.93 -0.29 1.27 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -32.33 304.02 -6.41 -38.74 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.19 Total: -2.90 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.09 Total: -62.10 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -3.95 Total: 17.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.33 -6.41 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998607850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.746 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds