Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34663 * 125.79830 * 2 1 4 4 H 0.96993 * 124.85435 * 0.02562 * 3 2 1 5 5 C 1.36449 * 110.29332 * 180.29284 * 3 2 1 6 6 C 1.34483 * 108.85856 * 359.75146 * 5 3 2 7 7 C 1.36769 * 125.80648 * 179.86789 * 2 1 3 8 8 C 1.47266 * 126.93739 * 359.97438 * 7 2 1 9 9 O 1.21620 * 120.00183 * 34.30960 * 8 7 2 10 10 N 1.34773 * 119.99687 * 214.31581 * 8 7 2 11 11 C 1.46497 * 120.00566 * 5.86469 * 10 8 7 12 12 C 1.46510 * 120.00047 * 185.86997 * 10 8 7 13 13 C 1.53776 * 113.69061 * 82.45129 * 12 10 8 14 14 C 1.53780 * 87.08249 * 89.13006 * 13 12 10 15 15 N 1.46504 * 113.61312 * 270.88128 * 14 13 12 16 16 C 1.36933 * 119.99663 * 185.70679 * 15 14 13 17 17 H 1.07996 * 120.00308 * 4.55098 * 16 15 14 18 18 C 1.38814 * 119.99699 * 184.54816 * 16 15 14 19 19 N 1.31622 * 120.00139 * 174.82284 * 18 16 15 20 20 Si 1.86798 * 120.00102 * 354.82267 * 18 16 15 21 21 H 1.48500 * 109.47260 * 95.09952 * 20 18 16 22 22 H 1.48506 * 109.47383 * 215.09881 * 20 18 16 23 23 H 1.48503 * 109.47075 * 335.10181 * 20 18 16 24 24 C 1.53772 * 113.61438 * 179.97438 * 12 10 8 25 25 H 1.08995 * 109.47322 * 270.13300 * 1 2 3 26 26 H 1.09004 * 109.47025 * 30.13882 * 1 2 3 27 27 H 1.09002 * 109.47026 * 150.13138 * 1 2 3 28 28 H 1.08002 * 125.56752 * 179.73202 * 5 3 2 29 29 H 1.08000 * 126.83370 * 180.02562 * 6 5 3 30 30 H 1.09004 * 109.47555 * 275.28032 * 11 10 8 31 31 H 1.08998 * 109.47074 * 35.27547 * 11 10 8 32 32 H 1.08994 * 109.47624 * 155.27515 * 11 10 8 33 33 H 1.09004 * 112.84212 * 311.18326 * 12 10 8 34 34 H 1.08999 * 113.61236 * 203.68228 * 13 12 10 35 35 H 1.09004 * 113.61291 * 334.57843 * 13 12 10 36 36 H 1.08992 * 113.68819 * 139.99090 * 14 13 12 37 37 H 0.96995 * 119.99854 * 5.71432 * 15 14 13 38 38 H 0.96995 * 120.00143 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61766 * 25.34838 * 24 12 10 40 40 H 1.09002 * 113.61538 * 156.25061 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0065 6 6 3.6882 -0.6150 -0.0054 7 6 2.3071 -1.1092 0.0026 8 6 1.8703 -2.5156 0.0063 9 8 0.8588 -2.8398 -0.5862 10 7 2.5913 -3.4433 0.6665 11 6 3.7355 -3.0356 1.4855 12 6 2.2309 -4.8598 0.5650 13 6 2.7786 -5.5478 -0.6965 14 6 4.0386 -5.8725 0.1230 15 7 5.0645 -4.8285 0.0605 16 6 6.2856 -5.0327 0.6455 17 1 6.5189 -5.9895 1.0886 18 6 7.2237 -4.0098 0.6688 19 7 8.3569 -4.1707 1.3188 20 14 6.8780 -2.4049 -0.2223 21 1 6.3075 -1.4213 0.7328 22 1 8.1429 -1.8699 -0.7873 23 1 5.9088 -2.6475 -1.3209 24 6 3.1502 -5.7888 1.3751 25 1 -0.3634 0.0024 1.0276 26 1 -0.3633 0.8888 -0.5160 27 1 -0.3633 -0.8912 -0.5118 28 1 4.4496 1.4061 -0.0121 29 1 4.5890 -1.2108 -0.0090 30 1 4.6194 -2.9427 0.8544 31 1 3.5222 -2.0755 1.9554 32 1 3.9163 -3.7850 2.2560 33 1 1.1692 -5.0395 0.7345 34 1 2.2116 -6.4300 -0.9937 35 1 2.9605 -4.8619 -1.5239 36 1 4.4375 -6.8695 -0.0635 37 1 4.8786 -3.9926 -0.3951 38 1 9.0125 -3.4561 1.3348 39 1 3.6323 -5.2976 2.2203 40 1 2.6850 -6.7371 1.6444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998607850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = 54.487966 kcal Electronic energy + Delta-G solvation = -22855.533812 eV Core-core repulsion = 19672.570997 eV Total energy + Delta-G solvation = -3182.962815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34307 -41.22662 -39.06744 -35.67660 -35.11143 -32.71818 -32.54214 -31.79609 -28.25621 -27.46502 -26.67659 -25.81867 -24.69593 -22.79766 -21.86578 -20.22728 -19.81113 -19.07936 -18.46879 -17.65314 -16.94095 -16.70686 -16.48580 -15.91182 -15.81850 -15.31266 -15.20316 -14.78220 -14.41677 -14.07622 -13.92769 -13.79616 -13.63518 -13.49056 -13.33713 -12.82383 -12.78776 -12.61451 -12.41419 -12.38168 -12.00662 -11.85676 -11.74683 -11.09934 -10.85606 -10.81465 -9.83010 -9.49895 -9.20940 -9.15061 -8.00696 -5.32666 0.78250 1.28930 1.36003 1.40034 1.42925 2.01605 2.30642 2.39846 2.44096 3.28012 3.53179 3.59022 3.78877 3.88184 3.98858 4.14540 4.24051 4.28231 4.31836 4.34322 4.56611 4.65947 4.70630 4.84662 4.87559 4.88675 4.95681 4.99829 5.04817 5.06955 5.21204 5.33830 5.40028 5.66867 5.71529 5.84482 5.94586 6.24230 6.49582 6.65897 7.07797 7.25945 7.84722 8.04416 9.20096 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.008457 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.660197 B = 3310.147892 C = 4673.296828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.103 3.897 3 N -0.531 5.531 4 H 0.437 0.563 5 C 0.000 4.000 6 C -0.214 4.214 7 C -0.267 4.267 8 C 0.585 3.415 9 O -0.579 6.579 10 N -0.588 5.588 11 C 0.085 3.915 12 C 0.125 3.875 13 C -0.149 4.149 14 C 0.148 3.852 15 N -0.735 5.735 16 C -0.220 4.220 17 H 0.065 0.935 18 C -0.050 4.050 19 N -0.976 5.976 20 Si 0.925 3.075 21 H -0.246 1.246 22 H -0.303 1.303 23 H -0.275 1.275 24 C -0.162 4.162 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.202 0.798 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.108 10.734 -0.657 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.017 4.017 3 N -0.128 5.128 4 H 0.278 0.722 5 C -0.128 4.128 6 C -0.238 4.238 7 C -0.277 4.277 8 C 0.377 3.623 9 O -0.461 6.461 10 N -0.318 5.318 11 C -0.057 4.057 12 C 0.022 3.978 13 C -0.188 4.188 14 C 0.039 3.961 15 N -0.380 5.380 16 C -0.351 4.351 17 H 0.083 0.917 18 C -0.242 4.242 19 N -0.626 5.626 20 Si 0.755 3.245 21 H -0.172 1.172 22 H -0.230 1.230 23 H -0.202 1.202 24 C -0.202 4.202 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.219 0.781 29 H 0.139 0.861 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.199 0.801 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.458 10.598 -0.825 19.593 hybrid contribution 0.791 1.033 -0.569 1.420 sum -15.668 11.631 -1.393 19.563 Atomic orbital electron populations 1.20570 0.85329 1.04878 1.04090 1.20515 0.94581 0.85364 1.01194 1.41461 1.05195 1.08857 1.57300 0.72229 1.22087 0.87047 0.95516 1.08139 1.22485 0.95615 0.95576 1.10076 1.20194 0.94193 0.92149 1.21177 1.17744 0.82050 0.85039 0.77506 1.90643 1.26638 1.82468 1.46401 1.47441 1.30463 1.06207 1.47711 1.22204 0.87847 1.00254 0.95425 1.21894 0.98676 0.79600 0.97631 1.23689 0.97430 1.01297 0.96388 1.21399 0.87554 0.92002 0.95146 1.42864 1.11824 1.17054 1.66217 1.18981 0.90456 0.98133 1.27506 0.91706 1.25241 0.96637 1.00683 1.01659 1.69842 1.10138 1.34561 1.48102 0.86071 0.76197 0.82580 0.79682 1.17195 1.23034 1.20186 1.23996 0.97534 0.99773 0.98895 0.89407 0.88289 0.90525 0.78136 0.86093 0.92789 0.91795 0.90074 0.88827 0.85878 0.93932 0.92079 0.80070 0.93355 0.91132 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 10.20 71.23 0.73 -1.04 16 2 C 0.10 2.59 7.17 41.78 0.30 2.89 16 3 N -0.53 -9.97 5.90 -182.72 -1.08 -11.04 16 4 H 0.44 4.13 8.96 -92.71 -0.83 3.30 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.21 -7.15 9.07 23.62 0.21 -6.93 16 7 C -0.27 -9.04 5.36 -19.04 -0.10 -9.14 16 8 C 0.59 22.26 7.48 86.62 0.65 22.91 16 9 O -0.58 -23.57 15.35 -4.09 -0.06 -23.63 16 10 N -0.59 -21.72 2.72 -823.72 -2.24 -23.96 16 11 C 0.09 3.27 7.14 127.77 0.91 4.18 16 12 C 0.13 4.18 3.97 45.51 0.18 4.36 16 13 C -0.15 -4.99 7.57 31.12 0.24 -4.76 16 14 C 0.15 5.63 4.53 45.50 0.21 5.84 16 15 N -0.74 -34.29 3.06 -320.51 -0.98 -35.27 16 16 C -0.22 -12.12 10.34 84.03 0.87 -11.26 16 17 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 18 C -0.05 -2.89 5.50 84.86 0.47 -2.42 16 19 N -0.98 -60.79 13.97 21.65 0.30 -60.49 16 20 Si 0.92 44.71 23.27 68.60 1.60 46.30 16 21 H -0.25 -10.79 6.24 99.48 0.62 -10.17 16 22 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 23 H -0.28 -13.16 6.43 99.48 0.64 -12.52 16 24 C -0.16 -5.22 7.23 31.11 0.22 -4.99 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 1.92 6.52 -2.39 -0.02 1.91 16 28 H 0.20 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.12 4.66 2.76 -2.91 -0.01 4.66 16 30 H 0.05 2.31 1.49 -2.38 0.00 2.31 16 31 H 0.06 2.28 6.59 -2.39 -0.02 2.27 16 32 H 0.08 3.13 5.31 -2.39 -0.01 3.11 16 33 H 0.09 2.91 8.05 -2.39 -0.02 2.89 16 34 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.36 17.32 4.02 -92.71 -0.37 16.95 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 39 H 0.07 2.53 5.53 -2.39 -0.01 2.51 16 40 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -73.17 304.02 3.15 -70.02 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.26 Total: 37.44 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.87 Total: 0.64 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -3.99 Total: -130.76 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.60 Total: 46.30 kcal Total: -73.17 3.15 -70.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998607850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.505 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds