Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39834 * 126.45918 * 2 1 4 4 C 1.35451 * 107.86565 * 180.26111 * 3 2 1 5 5 N 1.35537 * 108.86779 * 359.77603 * 4 3 2 6 6 H 0.97008 * 125.67605 * 179.97438 * 5 4 3 7 7 C 1.37644 * 108.64596 * 0.02562 * 5 4 3 8 8 C 1.46684 * 126.23384 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00052 * 154.13661 * 8 7 5 10 10 N 1.34777 * 119.99708 * 334.14139 * 8 7 5 11 11 C 1.46499 * 120.00320 * 4.87705 * 10 8 7 12 12 C 1.46496 * 119.99892 * 184.87917 * 10 8 7 13 13 C 1.53778 * 113.61907 * 219.13338 * 12 10 8 14 14 C 1.53947 * 87.02393 * 220.04892 * 13 12 10 15 15 N 1.46497 * 113.53659 * 270.80937 * 14 13 12 16 16 C 1.36935 * 120.00025 * 252.49193 * 15 14 13 17 17 H 1.07997 * 120.00389 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00300 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99461 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47121 * 90.00291 * 20 18 16 22 22 H 1.48499 * 109.46849 * 210.00246 * 20 18 16 23 23 H 1.48495 * 109.46954 * 330.00130 * 20 18 16 24 24 C 1.53778 * 87.11192 * 25.35896 * 14 13 12 25 25 H 1.09003 * 109.46859 * 270.12180 * 1 2 3 26 26 H 1.09004 * 109.47363 * 30.11609 * 1 2 3 27 27 H 1.09000 * 109.47332 * 150.11985 * 1 2 3 28 28 H 1.07996 * 126.06621 * 0.03070 * 3 2 1 29 29 H 1.07994 * 125.56850 * 179.80593 * 4 3 2 30 30 H 1.08993 * 109.46944 * 95.64033 * 11 10 8 31 31 H 1.08997 * 109.46990 * 215.64570 * 11 10 8 32 32 H 1.09000 * 109.46737 * 335.64333 * 11 10 8 33 33 H 1.09001 * 112.85258 * 350.33166 * 12 10 8 34 34 H 1.09009 * 113.60925 * 334.56999 * 13 12 10 35 35 H 1.09002 * 113.61690 * 105.46606 * 13 12 10 36 36 H 1.09000 * 113.74369 * 139.94017 * 14 13 12 37 37 H 0.97001 * 120.00125 * 72.49595 * 15 14 13 38 38 H 0.97000 * 119.99702 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61802 * 220.09155 * 24 14 13 40 40 H 1.09009 * 113.61252 * 89.18594 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6283 -0.6626 -0.0046 6 1 4.4190 -1.2245 -0.0082 7 6 2.3262 -1.1089 0.0017 8 6 1.8897 -2.5093 0.0045 9 8 0.8054 -2.8077 0.4694 10 7 2.6896 -3.4654 -0.5077 11 6 4.0372 -3.1233 -0.9694 12 6 2.2115 -4.8469 -0.6029 13 6 3.2860 -5.8952 -0.2691 14 6 2.7201 -6.7286 -1.4332 15 7 1.6409 -7.6351 -1.0332 16 6 1.8675 -8.9841 -0.9716 17 1 2.8418 -9.3799 -1.2174 18 6 0.8451 -9.8431 -0.5921 19 7 -0.3422 -9.3607 -0.2920 20 14 1.1544 -11.6834 -0.5074 21 1 1.6263 -12.0438 0.8537 22 1 -0.1057 -12.4112 -0.8033 23 1 2.1884 -12.0580 -1.5052 24 6 2.2209 -5.4048 -2.0359 25 1 -0.3633 0.0022 1.0277 26 1 -0.3634 0.8890 -0.5156 27 1 -0.3634 -0.8910 -0.5120 28 1 2.0137 2.1548 0.0005 29 1 4.4972 1.3251 -0.0103 30 1 4.7558 -3.3268 -0.1756 31 1 4.2841 -3.7228 -1.8456 32 1 4.0741 -2.0658 -1.2306 33 1 1.2690 -5.0057 -0.0788 34 1 4.3045 -5.5451 -0.4374 35 1 3.1533 -6.3608 0.7075 36 1 3.4854 -7.2205 -2.0335 37 1 0.7659 -7.2797 -0.8121 38 1 -1.0567 -9.9609 -0.0272 39 1 1.2296 -5.4752 -2.4836 40 1 2.9477 -4.9205 -2.6881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998710099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = 62.830336 kcal Electronic energy + Delta-G solvation = -21436.900975 eV Core-core repulsion = 18254.299912 eV Total energy + Delta-G solvation = -3182.601063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63906 -39.63712 -37.80603 -35.05130 -33.13673 -32.47459 -30.19361 -29.43348 -27.60236 -26.69192 -25.16275 -24.52193 -23.18111 -21.46147 -20.89570 -19.02707 -18.31381 -17.86321 -17.34838 -16.46457 -15.74049 -15.57749 -14.86871 -14.27835 -14.05610 -14.02970 -13.75320 -13.41365 -13.01969 -12.96762 -12.77115 -12.67373 -12.32603 -12.11084 -12.03512 -11.94118 -11.60216 -11.53023 -10.87830 -10.77983 -10.28428 -10.17539 -9.93888 -9.70109 -9.59707 -8.92278 -8.90202 -8.55250 -8.19351 -7.02281 -5.79731 -3.10327 1.45881 2.58373 2.88678 3.04399 3.40150 3.42325 3.47000 3.49279 4.52953 4.55354 4.76843 4.83441 5.01916 5.06242 5.10685 5.21987 5.31441 5.33484 5.46037 5.46830 5.64214 5.80387 5.84714 5.85423 5.96311 6.04485 6.05970 6.17488 6.26823 6.37826 6.49728 6.65276 6.68921 6.74933 6.84453 7.00242 7.21334 7.49114 7.67966 8.24245 8.38147 9.48885 10.05113 10.39211 11.42266 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037720 B = 0.003519 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.134240 B = 7954.917027 C = 8462.930191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.083 4.083 3 C -0.209 4.209 4 C 0.011 3.989 5 N -0.545 5.545 6 H 0.420 0.580 7 C -0.048 4.048 8 C 0.582 3.418 9 O -0.521 6.521 10 N -0.601 5.601 11 C 0.056 3.944 12 C 0.126 3.874 13 C -0.182 4.182 14 C 0.173 3.827 15 N -0.705 5.705 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.168 4.168 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.169 0.831 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 20.872 -1.755 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.233 4.233 4 C -0.124 4.124 5 N -0.146 5.146 6 H 0.263 0.737 7 C -0.161 4.161 8 C 0.370 3.630 9 O -0.397 6.397 10 N -0.333 5.333 11 C -0.087 4.087 12 C 0.024 3.976 13 C -0.224 4.224 14 C 0.060 3.940 15 N -0.344 5.344 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.208 4.208 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.186 0.814 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.462 20.331 -1.512 22.915 hybrid contribution 0.496 -0.949 0.187 1.087 sum 10.958 19.381 -1.325 22.304 Atomic orbital electron populations 1.20246 0.89358 1.02247 1.02350 1.19931 0.95856 0.90790 1.02601 1.20771 0.91846 0.98658 1.12068 1.22005 0.99489 0.83334 1.07570 1.42808 1.07436 1.07260 1.57124 0.73742 1.20331 0.83656 0.93787 1.18314 1.17217 0.84648 0.82986 0.78146 1.90853 1.21737 1.81452 1.45611 1.47869 1.14534 1.09257 1.61685 1.22134 0.84245 1.01563 1.00807 1.22804 0.99808 0.77001 0.97996 1.24336 0.96963 0.97877 1.03264 1.20926 0.91796 0.88451 0.92833 1.42214 1.09568 1.02921 1.79649 1.19261 0.96646 0.82714 1.39214 0.90947 1.24796 0.95751 0.98214 1.01942 1.69675 1.02015 1.34086 1.51822 0.86164 0.76889 0.85236 0.77712 1.21646 1.21712 1.20695 1.23964 1.02201 0.98678 0.96003 0.91259 0.92050 0.91124 0.84148 0.81386 0.92406 0.89991 0.90708 0.86114 0.91182 0.90862 0.91369 0.77888 0.93317 0.90936 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.71 36.01 0.35 -0.70 16 2 C -0.08 -1.07 6.20 -104.16 -0.65 -1.72 16 3 C -0.21 -2.09 10.76 -39.98 -0.43 -2.52 16 4 C 0.01 0.09 11.89 -16.91 -0.20 -0.11 16 5 N -0.54 -5.06 4.78 -9.39 -0.04 -5.11 16 6 H 0.42 2.83 6.02 -40.82 -0.25 2.58 16 7 C -0.05 -0.64 6.42 -81.98 -0.53 -1.17 16 8 C 0.58 9.44 7.50 -12.85 -0.10 9.34 16 9 O -0.52 -10.44 15.06 5.19 0.08 -10.36 16 10 N -0.60 -8.65 3.08 -174.55 -0.54 -9.19 16 11 C 0.06 0.54 7.75 59.85 0.46 1.00 16 12 C 0.13 2.16 4.10 -67.12 -0.28 1.88 16 13 C -0.18 -3.10 7.39 -25.83 -0.19 -3.29 16 14 C 0.17 3.38 4.57 -67.03 -0.31 3.07 16 15 N -0.71 -17.70 5.31 -52.56 -0.28 -17.98 16 16 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.17 -2.81 7.39 -25.92 -0.19 -3.00 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.00 7.25 -51.93 -0.38 0.63 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 31 H 0.08 0.73 6.57 -51.93 -0.34 0.39 16 32 H 0.07 0.60 4.56 -51.93 -0.24 0.36 16 33 H 0.12 2.50 7.20 -51.93 -0.37 2.12 16 34 H 0.07 0.98 6.86 -51.92 -0.36 0.62 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.39 10.47 7.90 -40.82 -0.32 10.15 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.06 6.76 -51.92 -0.35 0.71 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -33.62 325.27 -8.00 -41.62 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.52 Total: 10.95 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.30 Total: -4.59 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.14 Total: -59.82 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.62 -8.00 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998710099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.449 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds