Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39834 * 126.45918 * 2 1 4 4 C 1.35451 * 107.86565 * 180.26111 * 3 2 1 5 5 N 1.35537 * 108.86779 * 359.77603 * 4 3 2 6 6 H 0.97008 * 125.67605 * 179.97438 * 5 4 3 7 7 C 1.37644 * 108.64596 * 0.02562 * 5 4 3 8 8 C 1.46684 * 126.23384 * 179.97438 * 7 5 4 9 9 O 1.21695 * 120.00052 * 154.13661 * 8 7 5 10 10 N 1.34777 * 119.99708 * 334.14139 * 8 7 5 11 11 C 1.46499 * 120.00320 * 4.87705 * 10 8 7 12 12 C 1.46496 * 119.99892 * 184.87917 * 10 8 7 13 13 C 1.53778 * 113.61907 * 219.13338 * 12 10 8 14 14 C 1.53947 * 87.02393 * 220.04892 * 13 12 10 15 15 N 1.46497 * 113.53659 * 270.80937 * 14 13 12 16 16 C 1.36935 * 120.00025 * 252.49193 * 15 14 13 17 17 H 1.07997 * 120.00389 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00300 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99461 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47121 * 90.00291 * 20 18 16 22 22 H 1.48499 * 109.46849 * 210.00246 * 20 18 16 23 23 H 1.48495 * 109.46954 * 330.00130 * 20 18 16 24 24 C 1.53778 * 87.11192 * 25.35896 * 14 13 12 25 25 H 1.09003 * 109.46859 * 270.12180 * 1 2 3 26 26 H 1.09004 * 109.47363 * 30.11609 * 1 2 3 27 27 H 1.09000 * 109.47332 * 150.11985 * 1 2 3 28 28 H 1.07996 * 126.06621 * 0.03070 * 3 2 1 29 29 H 1.07994 * 125.56850 * 179.80593 * 4 3 2 30 30 H 1.08993 * 109.46944 * 95.64033 * 11 10 8 31 31 H 1.08997 * 109.46990 * 215.64570 * 11 10 8 32 32 H 1.09000 * 109.46737 * 335.64333 * 11 10 8 33 33 H 1.09001 * 112.85258 * 350.33166 * 12 10 8 34 34 H 1.09009 * 113.60925 * 334.56999 * 13 12 10 35 35 H 1.09002 * 113.61690 * 105.46606 * 13 12 10 36 36 H 1.09000 * 113.74369 * 139.94017 * 14 13 12 37 37 H 0.97001 * 120.00125 * 72.49595 * 15 14 13 38 38 H 0.97000 * 119.99702 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61802 * 220.09155 * 24 14 13 40 40 H 1.09009 * 113.61252 * 89.18594 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6283 -0.6626 -0.0046 6 1 4.4190 -1.2245 -0.0082 7 6 2.3262 -1.1089 0.0017 8 6 1.8897 -2.5093 0.0045 9 8 0.8054 -2.8077 0.4694 10 7 2.6896 -3.4654 -0.5077 11 6 4.0372 -3.1233 -0.9694 12 6 2.2115 -4.8469 -0.6029 13 6 3.2860 -5.8952 -0.2691 14 6 2.7201 -6.7286 -1.4332 15 7 1.6409 -7.6351 -1.0332 16 6 1.8675 -8.9841 -0.9716 17 1 2.8418 -9.3799 -1.2174 18 6 0.8451 -9.8431 -0.5921 19 7 -0.3422 -9.3607 -0.2920 20 14 1.1544 -11.6834 -0.5074 21 1 1.6263 -12.0438 0.8537 22 1 -0.1057 -12.4112 -0.8033 23 1 2.1884 -12.0580 -1.5052 24 6 2.2209 -5.4048 -2.0359 25 1 -0.3633 0.0022 1.0277 26 1 -0.3634 0.8890 -0.5156 27 1 -0.3634 -0.8910 -0.5120 28 1 2.0137 2.1548 0.0005 29 1 4.4972 1.3251 -0.0103 30 1 4.7558 -3.3268 -0.1756 31 1 4.2841 -3.7228 -1.8456 32 1 4.0741 -2.0658 -1.2306 33 1 1.2690 -5.0057 -0.0788 34 1 4.3045 -5.5451 -0.4374 35 1 3.1533 -6.3608 0.7075 36 1 3.4854 -7.2205 -2.0335 37 1 0.7659 -7.2797 -0.8121 38 1 -1.0567 -9.9609 -0.0272 39 1 1.2296 -5.4752 -2.4836 40 1 2.9477 -4.9205 -2.6881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998710099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = 39.600163 kcal Electronic energy + Delta-G solvation = -21437.908311 eV Core-core repulsion = 18254.299912 eV Total energy + Delta-G solvation = -3183.608399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51536 -40.88147 -39.18777 -36.40219 -34.92566 -33.45111 -31.90899 -30.54691 -28.53887 -27.69720 -26.61488 -26.19630 -24.78896 -22.52713 -21.82289 -19.93744 -19.76730 -19.44019 -18.71282 -17.74346 -16.87406 -16.71481 -16.58539 -15.75543 -15.34238 -15.15994 -14.88574 -14.73597 -14.28695 -14.19882 -13.93014 -13.68683 -13.44385 -13.37497 -13.24768 -13.16690 -12.91573 -12.78240 -12.53354 -12.50560 -12.17790 -11.84456 -11.71346 -11.30899 -11.00372 -10.89087 -9.77888 -9.62832 -9.09366 -9.04744 -7.96637 -5.27485 0.50365 1.46562 1.49060 1.57549 1.79538 1.86917 2.10787 2.44377 2.54328 3.34939 3.51151 3.70727 3.80555 3.82901 4.02056 4.22092 4.23220 4.27387 4.30046 4.40956 4.49138 4.63422 4.72254 4.81484 4.82777 4.86038 4.98214 4.98985 5.08800 5.13823 5.20053 5.26835 5.42483 5.49782 5.63004 5.81627 5.98232 6.24753 6.36804 6.58729 7.06847 7.29267 8.04652 8.26668 9.26979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037720 B = 0.003519 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.134240 B = 7954.917027 C = 8462.930191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.102 4.102 3 C -0.226 4.226 4 C 0.045 3.955 5 N -0.531 5.531 6 H 0.433 0.567 7 C -0.082 4.082 8 C 0.572 3.428 9 O -0.580 6.580 10 N -0.598 5.598 11 C 0.046 3.954 12 C 0.128 3.872 13 C -0.159 4.159 14 C 0.155 3.845 15 N -0.724 5.724 16 C -0.244 4.244 17 H 0.085 0.915 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.978 3.022 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.263 1.263 24 C -0.148 4.148 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.162 0.838 29 H 0.219 0.781 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.370 0.630 38 H 0.251 0.749 39 H 0.048 0.952 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.041 22.855 -2.762 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.250 4.250 4 C -0.091 4.091 5 N -0.134 5.134 6 H 0.278 0.722 7 C -0.194 4.194 8 C 0.363 3.637 9 O -0.460 6.460 10 N -0.329 5.329 11 C -0.096 4.096 12 C 0.024 3.976 13 C -0.201 4.201 14 C 0.044 3.956 15 N -0.362 5.362 16 C -0.376 4.376 17 H 0.103 0.897 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.807 3.193 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.188 1.188 24 C -0.188 4.188 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.179 0.821 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.201 0.799 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.718 22.334 -2.555 26.869 hybrid contribution -0.695 -1.389 0.479 1.626 sum 14.023 20.945 -2.077 25.291 Atomic orbital electron populations 1.20207 0.90229 1.01878 1.01797 1.20237 0.95968 0.92183 1.02700 1.21085 0.92234 0.98833 1.12824 1.22791 1.00405 0.82783 1.03104 1.42765 1.06331 1.08055 1.56285 0.72155 1.19874 0.85730 0.92018 1.21815 1.17748 0.84064 0.84496 0.77376 1.90814 1.24340 1.82549 1.48320 1.47863 1.16255 1.07572 1.61188 1.22521 0.81664 1.03215 1.02197 1.22348 0.98166 0.79202 0.97850 1.24139 0.99037 0.96494 1.00424 1.21254 0.91006 0.88933 0.94410 1.42435 1.10357 1.03138 1.80252 1.19737 0.96809 0.83965 1.37038 0.89682 1.25685 0.95698 1.02872 1.02908 1.69861 1.03039 1.35330 1.54126 0.85069 0.76667 0.79693 0.77890 1.21508 1.22492 1.18767 1.23834 1.01971 0.96951 0.96026 0.92001 0.89665 0.94099 0.82081 0.76464 0.89888 0.88473 0.88785 0.91061 0.86646 0.93785 0.89937 0.79861 0.94058 0.93275 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.71 71.24 0.69 -1.48 16 2 C -0.10 -2.54 6.20 -19.57 -0.12 -2.66 16 3 C -0.23 -3.80 10.76 22.01 0.24 -3.56 16 4 C 0.05 0.51 11.89 83.48 0.99 1.51 16 5 N -0.53 -7.94 4.78 -183.63 -0.88 -8.81 16 6 H 0.43 3.86 6.02 -92.70 -0.56 3.30 16 7 C -0.08 -2.11 6.42 40.35 0.26 -1.85 16 8 C 0.57 19.13 7.50 86.45 0.65 19.78 16 9 O -0.58 -25.31 15.06 -4.33 -0.07 -25.38 16 10 N -0.60 -16.76 3.08 -824.37 -2.54 -19.30 16 11 C 0.05 0.70 7.75 127.77 0.99 1.69 16 12 C 0.13 4.47 4.10 45.52 0.19 4.66 16 13 C -0.16 -5.25 7.39 31.18 0.23 -5.02 16 14 C 0.15 5.93 4.57 45.57 0.21 6.14 16 15 N -0.72 -37.48 5.31 -320.19 -1.70 -39.18 16 16 C -0.24 -13.63 9.97 84.04 0.84 -12.79 16 17 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 19 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16 20 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 C -0.15 -4.84 7.39 31.12 0.23 -4.61 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.04 1.27 7.25 -2.39 -0.02 1.26 16 28 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.22 0.30 8.06 -2.91 -0.02 0.28 16 30 H 0.08 0.91 7.94 -2.39 -0.02 0.89 16 31 H 0.10 1.24 6.57 -2.39 -0.02 1.22 16 32 H 0.09 1.10 4.56 -2.39 -0.01 1.09 16 33 H 0.07 3.23 7.20 -2.39 -0.02 3.21 16 34 H 0.12 2.75 6.86 -2.38 -0.02 2.73 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 37 H 0.37 21.30 7.90 -92.71 -0.73 20.56 16 38 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 2.87 6.76 -2.38 -0.02 2.86 16 Total: -1.00 -80.02 325.27 2.76 -77.26 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.22 Total: 30.69 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.86 Total: -2.41 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -4.84 Total: -128.83 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -80.02 2.76 -77.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998710099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.855 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds