Wall clock time and date at job start Mon Mar 30 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34671 * 125.80059 * 2 1 4 4 H 0.96989 * 124.84978 * 0.02562 * 3 2 1 5 5 C 1.36441 * 110.29161 * 180.30420 * 3 2 1 6 6 C 1.34480 * 108.86377 * 359.73047 * 5 3 2 7 7 C 1.36765 * 125.80319 * 179.83684 * 2 1 3 8 8 C 1.47270 * 126.94176 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99761 * 320.92706 * 8 7 2 10 10 N 1.34770 * 120.00146 * 140.92606 * 8 7 2 11 11 C 1.46940 * 120.60581 * 354.61101 * 10 8 7 12 12 C 1.53193 * 108.76712 * 233.57379 * 11 10 8 13 13 C 1.53035 * 109.34476 * 305.41372 * 12 11 10 14 14 C 1.53041 * 109.53766 * 61.34596 * 13 12 11 15 15 H 1.09003 * 109.49398 * 58.58983 * 14 13 12 16 16 N 1.46497 * 109.49637 * 178.68505 * 14 13 12 17 17 C 1.36935 * 120.00051 * 205.00343 * 16 14 13 18 18 H 1.08002 * 120.00144 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00227 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00251 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46860 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47033 * 119.99892 * 21 19 17 24 24 H 1.48501 * 109.47084 * 239.99543 * 21 19 17 25 25 C 1.46926 * 120.62918 * 174.63082 * 10 8 7 26 26 H 1.09009 * 109.46972 * 270.16586 * 1 2 3 27 27 H 1.09008 * 109.47420 * 30.16084 * 1 2 3 28 28 H 1.08999 * 109.47484 * 150.16508 * 1 2 3 29 29 H 1.08002 * 125.56837 * 179.75138 * 5 3 2 30 30 H 1.07998 * 126.83909 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.56060 * 113.80648 * 11 10 8 32 32 H 1.08998 * 109.61439 * 353.37287 * 11 10 8 33 33 H 1.09007 * 109.49282 * 185.44316 * 12 11 10 34 34 H 1.09003 * 109.49802 * 65.38602 * 12 11 10 35 35 H 1.08995 * 109.46214 * 181.37491 * 13 12 11 36 36 H 1.09004 * 109.45374 * 301.33095 * 13 12 11 37 37 H 0.96998 * 120.00110 * 25.00118 * 16 14 13 38 38 H 0.96995 * 120.00724 * 180.02562 * 20 19 17 39 39 H 1.08993 * 109.58930 * 6.60099 * 25 10 8 40 40 H 1.09001 * 109.70209 * 246.24925 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6094 0.7274 -0.0068 6 6 3.6881 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0032 8 6 1.8702 -2.5156 0.0077 9 8 0.9091 -2.8517 0.6730 10 7 2.5353 -3.4302 -0.7254 11 6 3.6231 -3.0209 -1.6245 12 6 3.3361 -3.5681 -3.0263 13 6 3.1222 -5.0813 -2.9458 14 6 1.9151 -5.3808 -2.0539 15 1 1.0311 -4.8901 -2.4613 16 7 1.6921 -6.8278 -2.0027 17 6 0.4441 -7.3188 -1.7260 18 1 -0.3759 -6.6393 -1.5460 19 6 0.2328 -8.6899 -1.6770 20 7 1.2319 -9.5180 -1.8969 21 14 -1.4698 -9.3597 -1.3003 22 1 -2.4116 -8.2302 -1.0939 23 1 -1.9368 -10.1927 -2.4375 24 1 -1.4145 -10.1887 -0.0694 25 6 2.1862 -4.8549 -0.6409 26 1 -0.3633 0.0030 1.0278 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5112 29 1 4.4497 1.4060 -0.0121 30 1 4.5889 -1.2109 -0.0099 31 1 4.5682 -3.4243 -1.2611 32 1 3.6777 -1.9329 -1.6610 33 1 4.1816 -3.3544 -3.6803 34 1 2.4390 -3.0945 -3.4251 35 1 2.9420 -5.4763 -3.9455 36 1 4.0107 -5.5516 -2.5244 37 1 2.4284 -7.4380 -2.1648 38 1 1.0843 -10.4760 -1.8631 39 1 1.2931 -4.9765 -0.0281 40 1 3.0124 -5.4100 -0.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998856729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:56 Heat of formation + Delta-G solvation = 20.281271 kcal Electronic energy + Delta-G solvation = -21780.208393 eV Core-core repulsion = 18595.762265 eV Total energy + Delta-G solvation = -3184.446129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35126 -39.26924 -36.98636 -34.36523 -32.26954 -31.67123 -31.27403 -30.81073 -28.12943 -26.60695 -24.95882 -23.90993 -21.93078 -21.77934 -20.81441 -19.70030 -18.13789 -17.66992 -17.00750 -16.07205 -15.40017 -15.16854 -14.58121 -14.36489 -14.10683 -13.71006 -13.62461 -13.48866 -13.24733 -12.89702 -12.78745 -12.66324 -12.43525 -12.20178 -12.13092 -11.68205 -11.20726 -10.94357 -10.78305 -10.54563 -10.44880 -10.10158 -9.72470 -9.66667 -9.46018 -8.98903 -8.79363 -8.30623 -8.08077 -6.91872 -5.72517 -3.01694 1.89717 2.37110 3.01079 3.42705 3.49191 3.55048 3.57745 3.68008 4.64621 4.73552 4.82290 5.04753 5.09891 5.16279 5.27723 5.40156 5.47743 5.52884 5.57359 5.70069 5.78398 5.82043 5.87330 5.92576 6.01130 6.09263 6.18638 6.29010 6.33595 6.47153 6.61505 6.67542 6.82342 6.93721 6.96214 7.16973 7.32587 7.79034 7.92643 8.45846 8.68464 9.57743 10.12765 10.48228 11.50056 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.004373 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.333059 B = 6400.917619 C = 7144.009277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.089 3.911 3 N -0.555 5.555 4 H 0.413 0.587 5 C -0.020 4.020 6 C -0.168 4.168 7 C -0.220 4.220 8 C 0.585 3.415 9 O -0.548 6.548 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.094 3.906 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 23.501 0.375 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.148 4.148 6 C -0.193 4.193 7 C -0.230 4.230 8 C 0.373 3.627 9 O -0.427 6.427 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.168 4.168 13 C -0.164 4.164 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.031 4.031 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.241 23.369 0.755 24.200 hybrid contribution -0.518 -0.272 0.185 0.613 sum 5.723 23.097 0.940 23.814 Atomic orbital electron populations 1.20424 0.87254 1.03404 1.03525 1.20235 0.93551 0.85643 1.03329 1.41515 1.06185 1.08213 1.59230 0.75041 1.21683 0.85638 0.96369 1.11062 1.22058 0.95788 0.93400 1.08017 1.20243 0.93350 0.92338 1.17062 1.17467 0.82039 0.84061 0.79099 1.90768 1.27531 1.80980 1.43416 1.48057 1.35162 1.08010 1.42109 1.21927 0.89636 1.00804 0.89598 1.21885 1.01739 0.96932 0.96273 1.21822 0.99261 0.94467 1.00862 1.20489 0.95375 0.86649 0.91720 0.93206 1.42391 1.09796 0.99428 1.84392 1.19340 0.87293 0.90524 1.39820 0.90979 1.24731 0.97501 0.95949 1.02608 1.69669 1.30012 1.02009 1.56501 0.86127 0.83944 0.78793 0.77460 1.20431 1.21916 1.21835 1.22700 1.01522 0.77377 1.01457 0.90184 0.91853 0.89362 0.81514 0.83650 0.92020 0.88978 0.91280 0.91813 0.91614 0.92133 0.78126 0.93590 0.89213 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.87 36.00 0.36 -0.58 16 2 C 0.09 1.04 7.17 -81.88 -0.59 0.45 16 3 N -0.56 -4.55 5.90 -9.11 -0.05 -4.60 16 4 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 5 C -0.02 -0.17 11.88 -16.83 -0.20 -0.37 16 6 C -0.17 -1.84 8.67 -37.50 -0.33 -2.16 16 7 C -0.22 -3.11 5.35 -103.35 -0.55 -3.66 16 8 C 0.58 10.48 7.32 -12.59 -0.09 10.39 16 9 O -0.55 -11.84 15.75 5.25 0.08 -11.76 16 10 N -0.60 -10.20 2.97 -174.09 -0.52 -10.72 16 11 C 0.10 1.35 5.53 -3.70 -0.02 1.33 16 12 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 13 C -0.13 -2.09 5.36 -26.69 -0.14 -2.23 16 14 C 0.17 3.52 2.92 -67.81 -0.20 3.32 16 15 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.72 -18.44 5.12 -53.31 -0.27 -18.71 16 17 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 18 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 C 0.09 1.90 6.03 -3.71 -0.02 1.87 16 26 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.09 1.13 7.65 -51.93 -0.40 0.73 16 29 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.15 1.40 7.40 -52.49 -0.39 1.01 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.06 4.68 -51.93 -0.24 0.82 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 2.10 6.99 -51.93 -0.36 1.74 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -34.71 326.19 -8.19 -42.90 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.85 Total: 8.69 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.19 Total: -0.93 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.12 Total: -61.86 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.71 -8.19 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.180 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds