Wall clock time and date at job start Mon Mar 30 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34671 * 125.80059 * 2 1 4 4 H 0.96989 * 124.84978 * 0.02562 * 3 2 1 5 5 C 1.36441 * 110.29161 * 180.30420 * 3 2 1 6 6 C 1.34480 * 108.86377 * 359.73047 * 5 3 2 7 7 C 1.36765 * 125.80319 * 179.83684 * 2 1 3 8 8 C 1.47270 * 126.94176 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99761 * 320.92706 * 8 7 2 10 10 N 1.34770 * 120.00146 * 140.92606 * 8 7 2 11 11 C 1.46940 * 120.60581 * 354.61101 * 10 8 7 12 12 C 1.53193 * 108.76712 * 233.57379 * 11 10 8 13 13 C 1.53035 * 109.34476 * 305.41372 * 12 11 10 14 14 C 1.53041 * 109.53766 * 61.34596 * 13 12 11 15 15 H 1.09003 * 109.49398 * 58.58983 * 14 13 12 16 16 N 1.46497 * 109.49637 * 178.68505 * 14 13 12 17 17 C 1.36935 * 120.00051 * 205.00343 * 16 14 13 18 18 H 1.08002 * 120.00144 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00227 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00251 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46860 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47033 * 119.99892 * 21 19 17 24 24 H 1.48501 * 109.47084 * 239.99543 * 21 19 17 25 25 C 1.46926 * 120.62918 * 174.63082 * 10 8 7 26 26 H 1.09009 * 109.46972 * 270.16586 * 1 2 3 27 27 H 1.09008 * 109.47420 * 30.16084 * 1 2 3 28 28 H 1.08999 * 109.47484 * 150.16508 * 1 2 3 29 29 H 1.08002 * 125.56837 * 179.75138 * 5 3 2 30 30 H 1.07998 * 126.83909 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.56060 * 113.80648 * 11 10 8 32 32 H 1.08998 * 109.61439 * 353.37287 * 11 10 8 33 33 H 1.09007 * 109.49282 * 185.44316 * 12 11 10 34 34 H 1.09003 * 109.49802 * 65.38602 * 12 11 10 35 35 H 1.08995 * 109.46214 * 181.37491 * 13 12 11 36 36 H 1.09004 * 109.45374 * 301.33095 * 13 12 11 37 37 H 0.96998 * 120.00110 * 25.00118 * 16 14 13 38 38 H 0.96995 * 120.00724 * 180.02562 * 20 19 17 39 39 H 1.08993 * 109.58930 * 6.60099 * 25 10 8 40 40 H 1.09001 * 109.70209 * 246.24925 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6094 0.7274 -0.0068 6 6 3.6881 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0032 8 6 1.8702 -2.5156 0.0077 9 8 0.9091 -2.8517 0.6730 10 7 2.5353 -3.4302 -0.7254 11 6 3.6231 -3.0209 -1.6245 12 6 3.3361 -3.5681 -3.0263 13 6 3.1222 -5.0813 -2.9458 14 6 1.9151 -5.3808 -2.0539 15 1 1.0311 -4.8901 -2.4613 16 7 1.6921 -6.8278 -2.0027 17 6 0.4441 -7.3188 -1.7260 18 1 -0.3759 -6.6393 -1.5460 19 6 0.2328 -8.6899 -1.6770 20 7 1.2319 -9.5180 -1.8969 21 14 -1.4698 -9.3597 -1.3003 22 1 -2.4116 -8.2302 -1.0939 23 1 -1.9368 -10.1927 -2.4375 24 1 -1.4145 -10.1887 -0.0694 25 6 2.1862 -4.8549 -0.6409 26 1 -0.3633 0.0030 1.0278 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5112 29 1 4.4497 1.4060 -0.0121 30 1 4.5889 -1.2109 -0.0099 31 1 4.5682 -3.4243 -1.2611 32 1 3.6777 -1.9329 -1.6610 33 1 4.1816 -3.3544 -3.6803 34 1 2.4390 -3.0945 -3.4251 35 1 2.9420 -5.4763 -3.9455 36 1 4.0107 -5.5516 -2.5244 37 1 2.4284 -7.4380 -2.1648 38 1 1.0843 -10.4760 -1.8631 39 1 1.2931 -4.9765 -0.0281 40 1 3.0124 -5.4100 -0.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998856729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:56 Heat of formation + Delta-G solvation = -4.278633 kcal Electronic energy + Delta-G solvation = -21781.273391 eV Core-core repulsion = 18595.762265 eV Total energy + Delta-G solvation = -3185.511126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21276 -40.59918 -38.49733 -36.18505 -33.94586 -32.72833 -32.49101 -32.02160 -29.85543 -27.59173 -26.20058 -25.86965 -23.27670 -23.11822 -21.59898 -21.19979 -19.39990 -19.05265 -18.51109 -17.34996 -16.78455 -16.62598 -16.18539 -15.56124 -15.43790 -15.35133 -15.13800 -14.63282 -14.44524 -14.09866 -13.92583 -13.67689 -13.61382 -13.53284 -13.42746 -13.04884 -12.90888 -12.52630 -12.48336 -12.17115 -11.99421 -11.87092 -11.62928 -11.33903 -11.11856 -10.85539 -9.76231 -9.56333 -9.07811 -8.97662 -7.98843 -5.28135 0.88817 1.43544 1.45042 1.55397 1.60280 2.01726 2.36793 2.49770 2.55708 3.34239 3.77304 3.83166 3.94722 4.04481 4.14668 4.28500 4.31599 4.37974 4.39649 4.42331 4.65932 4.66577 4.69337 4.77673 4.90274 4.96418 5.01112 5.08353 5.09296 5.13518 5.24175 5.39600 5.44061 5.48616 5.66317 5.84009 6.04841 6.24243 6.59690 6.75711 7.30542 7.32265 8.02326 8.28803 9.24164 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.004373 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.333059 B = 6400.917619 C = 7144.009277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 N -0.536 5.536 4 H 0.434 0.566 5 C 0.009 3.991 6 C -0.189 4.189 7 C -0.259 4.259 8 C 0.576 3.424 9 O -0.602 6.602 10 N -0.601 5.601 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.117 4.117 14 C 0.168 3.832 15 H 0.028 0.972 16 N -0.730 5.730 17 C -0.246 4.246 18 H 0.063 0.937 19 C -0.067 4.067 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.290 1.290 25 C 0.109 3.891 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.213 0.787 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.378 0.622 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 26.764 -0.276 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.119 4.119 6 C -0.212 4.212 7 C -0.270 4.270 8 C 0.367 3.633 9 O -0.485 6.485 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.159 4.159 13 C -0.155 4.155 14 C 0.059 3.941 15 H 0.046 0.954 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.081 0.919 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.797 3.203 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.217 1.217 25 C -0.017 4.017 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.174 0.826 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.210 0.790 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.961 26.716 0.080 27.877 hybrid contribution -1.019 -1.162 0.406 1.598 sum 6.942 25.554 0.487 26.485 Atomic orbital electron populations 1.20387 0.87180 1.03525 1.03384 1.20261 0.93940 0.86255 1.02856 1.41518 1.05991 1.08407 1.57432 0.72620 1.22339 0.86332 0.95996 1.07279 1.22227 0.94471 0.94772 1.09753 1.20110 0.95913 0.90377 1.20557 1.18200 0.81151 0.85828 0.78089 1.90721 1.30026 1.82134 1.45645 1.48105 1.36105 1.06272 1.42780 1.22244 0.88766 1.02453 0.88506 1.21874 1.03191 0.93651 0.97141 1.21733 0.97037 0.97469 0.99292 1.20627 0.96703 0.83930 0.92863 0.95394 1.42512 1.08622 1.01362 1.84483 1.19557 0.88320 0.90784 1.39071 0.91852 1.25477 1.01095 0.96182 1.03194 1.69796 1.31775 1.02022 1.57824 0.85152 0.79900 0.78040 0.77163 1.19887 1.21270 1.21737 1.22155 0.99507 0.80056 0.99972 0.90518 0.88282 0.92594 0.77002 0.82557 0.90123 0.86530 0.87132 0.92474 0.91999 0.91380 0.78967 0.93782 0.93580 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.87 71.23 0.70 -1.10 16 2 C 0.09 1.86 7.17 41.78 0.30 2.16 16 3 N -0.54 -6.63 5.90 -182.73 -1.08 -7.71 16 4 H 0.43 2.00 8.96 -92.72 -0.83 1.17 16 5 C 0.01 0.10 11.88 83.12 0.99 1.09 16 6 C -0.19 -3.52 8.67 23.62 0.20 -3.32 16 7 C -0.26 -7.10 5.35 -19.04 -0.10 -7.21 16 8 C 0.58 21.44 7.32 86.62 0.63 22.07 16 9 O -0.60 -28.00 15.75 -4.13 -0.07 -28.07 16 10 N -0.60 -20.82 2.97 -822.94 -2.45 -23.27 16 11 C 0.10 2.44 5.53 86.36 0.48 2.92 16 12 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 13 C -0.12 -3.82 5.36 30.62 0.16 -3.66 16 14 C 0.17 7.31 2.92 45.07 0.13 7.44 16 15 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 16 N -0.73 -38.95 5.12 -322.58 -1.65 -40.61 16 17 C -0.25 -14.60 9.93 84.03 0.83 -13.76 16 18 H 0.06 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.96 -60.29 13.06 21.65 0.28 -60.01 16 21 Si 0.97 48.60 29.55 68.60 2.03 50.62 16 22 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 C 0.11 4.65 6.03 86.36 0.52 5.17 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.16 2.47 7.40 -2.91 -0.02 2.45 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 2.32 4.68 -2.39 -0.01 2.31 16 33 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.38 20.97 7.80 -92.71 -0.72 20.25 16 38 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.05 2.34 6.99 -2.39 -0.02 2.33 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -80.84 326.19 2.08 -78.76 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.49 Total: 24.71 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.51 Total: 5.57 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -4.89 Total: -131.60 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.07 Total: -28.07 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.62 kcal Total: -80.84 2.08 -78.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.483 kcal (2) G-P(sol) polarization free energy of solvation -80.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds