Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34653 * 125.80157 * 2 1 4 4 H 0.96999 * 124.85126 * 0.02562 * 3 2 1 5 5 C 1.36447 * 110.29538 * 180.29660 * 3 2 1 6 6 C 1.34484 * 108.85898 * 359.74572 * 5 3 2 7 7 C 1.36772 * 125.79487 * 179.86482 * 2 1 3 8 8 C 1.47250 * 126.94704 * 359.97438 * 7 2 1 9 9 O 1.21632 * 120.00149 * 320.91744 * 8 7 2 10 10 N 1.34778 * 120.00449 * 140.92177 * 8 7 2 11 11 C 1.46920 * 120.63520 * 174.63176 * 10 8 7 12 12 C 1.53194 * 108.77710 * 126.41022 * 11 10 8 13 13 C 1.53039 * 109.31144 * 54.63624 * 12 11 10 14 14 C 1.53044 * 109.53800 * 298.63194 * 13 12 11 15 15 H 1.09001 * 109.49806 * 301.38959 * 14 13 12 16 16 N 1.46494 * 109.49825 * 181.32136 * 14 13 12 17 17 C 1.36935 * 120.00257 * 155.00219 * 16 14 13 18 18 H 1.08001 * 119.99599 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99993 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00047 * 359.72643 * 19 17 16 21 21 Si 1.86800 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47296 * 89.99997 * 21 19 17 23 23 H 1.48500 * 109.47053 * 210.00072 * 21 19 17 24 24 H 1.48503 * 109.47234 * 329.99940 * 21 19 17 25 25 C 1.46932 * 120.62570 * 354.64576 * 10 8 7 26 26 H 1.09008 * 109.47254 * 270.13400 * 1 2 3 27 27 H 1.09010 * 109.47193 * 30.13427 * 1 2 3 28 28 H 1.09000 * 109.47635 * 150.13112 * 1 2 3 29 29 H 1.07996 * 125.57429 * 179.77306 * 5 3 2 30 30 H 1.08003 * 126.83928 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.58815 * 6.62287 * 11 10 8 32 32 H 1.09001 * 109.58534 * 246.19846 * 11 10 8 33 33 H 1.08995 * 109.49920 * 294.68138 * 12 11 10 34 34 H 1.09008 * 109.49740 * 174.58781 * 12 11 10 35 35 H 1.09003 * 109.45563 * 178.61392 * 13 12 11 36 36 H 1.08998 * 109.45256 * 58.64786 * 13 12 11 37 37 H 0.97004 * 120.00097 * 334.99739 * 16 14 13 38 38 H 0.97004 * 119.99612 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.58252 * 113.80717 * 25 10 8 40 40 H 1.08995 * 109.58744 * 353.38271 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 0.0004 5 6 3.6095 0.7273 -0.0066 6 6 3.6881 -0.6152 -0.0054 7 6 2.3069 -1.1094 0.0026 8 6 1.8701 -2.5156 0.0065 9 8 0.9091 -2.8521 0.6718 10 7 2.5351 -3.4300 -0.7271 11 6 2.1860 -4.8546 -0.6434 12 6 1.9152 -5.3798 -2.0568 13 6 3.1226 -5.0800 -2.9481 14 6 3.3365 -3.5667 -3.0280 15 1 2.4394 -3.0929 -3.4267 16 7 4.4730 -3.2792 -3.9065 17 6 4.5585 -2.0691 -4.5417 18 1 3.7879 -1.3267 -4.3952 19 6 5.6357 -1.7965 -5.3737 20 7 6.5775 -2.6992 -5.5480 21 14 5.7527 -0.1454 -6.2395 22 1 6.4931 0.8128 -5.3801 23 1 6.4715 -0.3121 -7.5282 24 1 4.3864 0.3756 -6.4987 25 6 3.6234 -3.0209 -1.6256 26 1 -0.3634 0.0024 1.0277 27 1 -0.3634 0.8888 -0.5160 28 1 -0.3634 -0.8911 -0.5118 29 1 4.4497 1.4058 -0.0116 30 1 4.5889 -1.2111 -0.0099 31 1 1.2926 -4.9765 -0.0309 32 1 3.0137 -5.4082 -0.2002 33 1 1.0314 -4.8890 -2.4642 34 1 1.7492 -6.4565 -2.0192 35 1 2.9425 -5.4745 -3.9481 36 1 4.0107 -5.5505 -2.5265 37 1 5.1650 -3.9461 -4.0383 38 1 7.3304 -2.5085 -6.1291 39 1 4.5683 -3.4250 -1.2626 40 1 3.6785 -1.9329 -1.6611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998856730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = 18.880595 kcal Electronic energy + Delta-G solvation = -22155.434461 eV Core-core repulsion = 18970.927594 eV Total energy + Delta-G solvation = -3184.506866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12998 -39.26109 -37.02858 -34.17913 -32.54469 -31.51156 -31.40115 -30.42986 -28.10394 -26.45866 -24.88537 -23.95066 -22.39601 -21.21479 -20.49061 -19.84657 -18.02417 -17.48281 -17.05494 -16.06698 -15.36545 -15.07308 -14.59500 -14.26249 -14.00443 -13.84705 -13.44929 -13.38229 -13.31180 -12.70116 -12.69018 -12.53099 -12.36476 -12.30089 -12.04674 -11.49087 -11.25102 -10.99032 -10.82618 -10.54562 -10.43683 -10.21685 -9.89118 -9.66470 -9.49403 -9.04273 -8.53069 -8.20571 -7.96644 -6.97615 -5.79254 -3.08331 2.05955 2.64597 3.19707 3.40319 3.45840 3.47653 3.50876 3.74973 4.56371 4.90616 5.00596 5.17556 5.26357 5.32485 5.35306 5.46527 5.51260 5.58164 5.71294 5.72646 5.86691 5.88589 5.94098 6.03502 6.08854 6.18722 6.24717 6.27519 6.40632 6.44700 6.51106 6.83570 6.90912 6.95483 7.05170 7.14358 7.56910 7.69035 7.91665 8.39122 8.65807 9.50712 10.06721 10.42305 11.43247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006832 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.345861 B = 4097.205509 C = 5615.404278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 N -0.554 5.554 4 H 0.413 0.587 5 C -0.017 4.017 6 C -0.157 4.157 7 C -0.223 4.223 8 C 0.593 3.407 9 O -0.565 6.565 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.128 4.128 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.049 0.951 16 N -0.719 5.719 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.083 3.917 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 3.226 11.185 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 N -0.150 5.150 4 H 0.249 0.751 5 C -0.145 4.145 6 C -0.181 4.181 7 C -0.233 4.233 8 C 0.383 3.617 9 O -0.445 6.445 10 N -0.333 5.333 11 C -0.010 4.010 12 C -0.167 4.167 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.067 0.933 16 N -0.359 5.359 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.042 4.042 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.186 0.814 30 H 0.165 0.835 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.194 3.333 11.420 15.035 hybrid contribution 0.606 1.165 -0.692 1.484 sum -8.588 4.497 10.728 14.459 Atomic orbital electron populations 1.20374 0.87505 1.03246 1.03102 1.20142 0.93353 0.85773 1.03754 1.41477 1.06233 1.08092 1.59221 0.75125 1.21707 0.85510 0.96508 1.10740 1.22086 0.95750 0.93490 1.06808 1.20071 0.93526 0.91971 1.17764 1.17467 0.81523 0.84354 0.78404 1.90695 1.28199 1.81308 1.44335 1.48061 1.36075 1.06616 1.42554 1.21534 1.01182 0.80871 0.97383 1.21869 0.99115 1.00467 0.95259 1.21831 0.97330 0.97727 0.99581 1.20499 0.92125 0.92497 0.89222 0.93281 1.42376 1.24262 1.17218 1.52082 1.19236 1.05155 0.92306 1.20225 0.91209 1.24716 0.97339 0.97984 1.00662 1.69657 1.12343 1.33966 1.42049 0.86230 0.77396 0.83775 0.79045 1.21734 1.21793 1.20828 1.23068 0.87887 1.02524 0.90722 0.90456 0.91875 0.89705 0.81421 0.83528 0.89529 0.91972 0.91764 0.91246 0.91617 0.92124 0.78093 0.93495 0.92298 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.87 36.01 0.36 -0.63 16 2 C 0.09 1.21 7.17 -81.89 -0.59 0.63 16 3 N -0.55 -6.33 5.90 -9.11 -0.05 -6.39 16 4 H 0.41 3.18 8.96 -40.82 -0.37 2.81 16 5 C -0.02 -0.22 11.89 -16.83 -0.20 -0.42 16 6 C -0.16 -2.40 8.67 -37.49 -0.33 -2.72 16 7 C -0.22 -3.69 5.35 -103.35 -0.55 -4.25 16 8 C 0.59 10.69 7.32 -12.60 -0.09 10.60 16 9 O -0.56 -11.12 15.75 5.25 0.08 -11.04 16 10 N -0.60 -10.23 2.97 -174.10 -0.52 -10.75 16 11 C 0.11 1.68 6.44 -3.71 -0.02 1.65 16 12 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 13 C -0.13 -2.10 5.35 -26.69 -0.14 -2.24 16 14 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 15 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.72 -17.46 5.12 -53.31 -0.27 -17.73 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.57 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 21 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.08 1.52 5.11 -3.71 -0.02 1.50 16 26 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.08 1.12 7.65 -51.93 -0.40 0.72 16 29 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.15 2.21 7.40 -52.48 -0.39 1.82 16 31 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.90 4.68 -51.93 -0.24 1.66 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -32.37 326.19 -8.19 -40.56 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.85 Total: 11.95 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.19 Total: -1.69 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.12 Total: -61.63 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.37 -8.19 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.436 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds