Wall clock time and date at job start Mon Mar 30 2020 01:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34653 * 125.80157 * 2 1 4 4 H 0.96999 * 124.85126 * 0.02562 * 3 2 1 5 5 C 1.36447 * 110.29538 * 180.29660 * 3 2 1 6 6 C 1.34484 * 108.85898 * 359.74572 * 5 3 2 7 7 C 1.36772 * 125.79487 * 179.86482 * 2 1 3 8 8 C 1.47250 * 126.94704 * 359.97438 * 7 2 1 9 9 O 1.21632 * 120.00149 * 320.91744 * 8 7 2 10 10 N 1.34778 * 120.00449 * 140.92177 * 8 7 2 11 11 C 1.46920 * 120.63520 * 174.63176 * 10 8 7 12 12 C 1.53194 * 108.77710 * 126.41022 * 11 10 8 13 13 C 1.53039 * 109.31144 * 54.63624 * 12 11 10 14 14 C 1.53044 * 109.53800 * 298.63194 * 13 12 11 15 15 H 1.09001 * 109.49806 * 301.38959 * 14 13 12 16 16 N 1.46494 * 109.49825 * 181.32136 * 14 13 12 17 17 C 1.36935 * 120.00257 * 155.00219 * 16 14 13 18 18 H 1.08001 * 119.99599 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99993 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00047 * 359.72643 * 19 17 16 21 21 Si 1.86800 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47296 * 89.99997 * 21 19 17 23 23 H 1.48500 * 109.47053 * 210.00072 * 21 19 17 24 24 H 1.48503 * 109.47234 * 329.99940 * 21 19 17 25 25 C 1.46932 * 120.62570 * 354.64576 * 10 8 7 26 26 H 1.09008 * 109.47254 * 270.13400 * 1 2 3 27 27 H 1.09010 * 109.47193 * 30.13427 * 1 2 3 28 28 H 1.09000 * 109.47635 * 150.13112 * 1 2 3 29 29 H 1.07996 * 125.57429 * 179.77306 * 5 3 2 30 30 H 1.08003 * 126.83928 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.58815 * 6.62287 * 11 10 8 32 32 H 1.09001 * 109.58534 * 246.19846 * 11 10 8 33 33 H 1.08995 * 109.49920 * 294.68138 * 12 11 10 34 34 H 1.09008 * 109.49740 * 174.58781 * 12 11 10 35 35 H 1.09003 * 109.45563 * 178.61392 * 13 12 11 36 36 H 1.08998 * 109.45256 * 58.64786 * 13 12 11 37 37 H 0.97004 * 120.00097 * 334.99739 * 16 14 13 38 38 H 0.97004 * 119.99612 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.58252 * 113.80717 * 25 10 8 40 40 H 1.08995 * 109.58744 * 353.38271 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 0.0004 5 6 3.6095 0.7273 -0.0066 6 6 3.6881 -0.6152 -0.0054 7 6 2.3069 -1.1094 0.0026 8 6 1.8701 -2.5156 0.0065 9 8 0.9091 -2.8521 0.6718 10 7 2.5351 -3.4300 -0.7271 11 6 2.1860 -4.8546 -0.6434 12 6 1.9152 -5.3798 -2.0568 13 6 3.1226 -5.0800 -2.9481 14 6 3.3365 -3.5667 -3.0280 15 1 2.4394 -3.0929 -3.4267 16 7 4.4730 -3.2792 -3.9065 17 6 4.5585 -2.0691 -4.5417 18 1 3.7879 -1.3267 -4.3952 19 6 5.6357 -1.7965 -5.3737 20 7 6.5775 -2.6992 -5.5480 21 14 5.7527 -0.1454 -6.2395 22 1 6.4931 0.8128 -5.3801 23 1 6.4715 -0.3121 -7.5282 24 1 4.3864 0.3756 -6.4987 25 6 3.6234 -3.0209 -1.6256 26 1 -0.3634 0.0024 1.0277 27 1 -0.3634 0.8888 -0.5160 28 1 -0.3634 -0.8911 -0.5118 29 1 4.4497 1.4058 -0.0116 30 1 4.5889 -1.2111 -0.0099 31 1 1.2926 -4.9765 -0.0309 32 1 3.0137 -5.4082 -0.2002 33 1 1.0314 -4.8890 -2.4642 34 1 1.7492 -6.4565 -2.0192 35 1 2.9425 -5.4745 -3.9481 36 1 4.0107 -5.5505 -2.5265 37 1 5.1650 -3.9461 -4.0383 38 1 7.3304 -2.5085 -6.1291 39 1 4.5683 -3.4250 -1.2626 40 1 3.6785 -1.9329 -1.6611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998856730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:58 Heat of formation + Delta-G solvation = -2.319161 kcal Electronic energy + Delta-G solvation = -22156.353751 eV Core-core repulsion = 18970.927594 eV Total energy + Delta-G solvation = -3185.426157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22197 -40.59779 -38.51949 -35.96920 -33.95251 -33.13675 -32.50693 -31.64318 -29.82089 -27.56371 -26.17256 -25.84486 -23.74885 -22.62347 -21.60373 -21.25374 -19.39285 -19.00307 -18.53347 -17.39216 -16.72397 -16.63671 -16.12110 -15.58494 -15.42323 -15.33869 -15.04477 -14.78158 -14.43287 -14.08941 -13.85594 -13.76102 -13.56361 -13.45440 -13.38037 -12.99626 -12.85929 -12.53992 -12.46492 -12.18436 -11.95741 -11.89230 -11.55997 -11.38468 -11.08920 -10.81204 -9.73950 -9.58859 -9.07927 -8.92287 -7.91995 -5.20884 0.88710 1.48499 1.49462 1.55160 1.57868 2.01979 2.37126 2.49054 2.59092 3.41663 3.68844 3.92366 3.97642 4.04027 4.09311 4.26030 4.32352 4.36329 4.43238 4.43827 4.64697 4.67315 4.70182 4.78293 4.95221 4.96223 4.97422 5.06548 5.07008 5.12082 5.21844 5.40410 5.47064 5.52824 5.68261 5.81712 6.02585 6.28967 6.51776 6.72084 7.28866 7.36709 8.08847 8.35048 9.31111 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006832 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.345861 B = 4097.205509 C = 5615.404278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 N -0.537 5.537 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.189 4.189 7 C -0.266 4.266 8 C 0.587 3.413 9 O -0.588 6.588 10 N -0.602 5.602 11 C 0.108 3.892 12 C -0.116 4.116 13 C -0.119 4.119 14 C 0.166 3.834 15 H 0.031 0.969 16 N -0.728 5.728 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.068 4.068 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.101 3.899 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.201 0.799 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.376 0.624 38 H 0.251 0.749 39 H 0.056 0.944 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 4.507 11.685 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.213 4.213 7 C -0.276 4.276 8 C 0.379 3.621 9 O -0.471 6.471 10 N -0.333 5.333 11 C -0.014 4.014 12 C -0.155 4.155 13 C -0.157 4.157 14 C 0.057 3.943 15 H 0.050 0.950 16 N -0.367 5.367 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.796 3.204 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.199 1.199 25 C -0.024 4.024 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.218 0.782 30 H 0.156 0.844 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.041 4.633 11.947 16.280 hybrid contribution 0.800 0.769 -0.789 1.362 sum -9.241 5.402 11.158 15.462 Atomic orbital electron populations 1.20408 0.85960 1.03748 1.03834 1.20460 0.94443 0.85817 1.02345 1.41473 1.05631 1.08687 1.57619 0.72668 1.22162 0.86669 0.96041 1.08246 1.22143 0.95122 0.94890 1.09113 1.20221 0.94814 0.91936 1.20616 1.17786 0.81146 0.85198 0.78002 1.90662 1.29200 1.81862 1.45341 1.48077 1.35577 1.07584 1.42073 1.21723 1.01827 0.79819 0.97991 1.21805 0.97334 1.02480 0.93876 1.21747 0.98850 0.95024 1.00125 1.20627 0.89818 0.94843 0.89044 0.95048 1.42491 1.25145 1.16279 1.52831 1.19509 1.04669 0.93045 1.19543 0.91232 1.25447 0.97379 1.01259 1.02005 1.69802 1.12964 1.35801 1.43152 0.85249 0.77544 0.80078 0.77569 1.21119 1.22368 1.19859 1.22644 0.88110 1.01722 0.89913 0.89562 0.88740 0.91755 0.78191 0.84446 0.89496 0.90402 0.92460 0.87879 0.92049 0.91507 0.79140 0.94018 0.92569 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.87 71.24 0.70 -1.06 16 2 C 0.09 2.34 7.17 41.78 0.30 2.64 16 3 N -0.54 -10.90 5.90 -182.73 -1.08 -11.98 16 4 H 0.43 5.17 8.96 -92.71 -0.83 4.33 16 5 C 0.00 -0.07 11.89 83.12 0.99 0.91 16 6 C -0.19 -5.70 8.67 23.62 0.20 -5.50 16 7 C -0.27 -8.76 5.35 -19.04 -0.10 -8.86 16 8 C 0.59 21.37 7.32 86.61 0.63 22.00 16 9 O -0.59 -23.30 15.75 -4.13 -0.07 -23.37 16 10 N -0.60 -20.48 2.97 -822.97 -2.45 -22.92 16 11 C 0.11 3.09 6.44 86.36 0.56 3.65 16 12 C -0.12 -3.09 6.08 30.67 0.19 -2.90 16 13 C -0.12 -3.86 5.35 30.62 0.16 -3.70 16 14 C 0.17 6.64 2.92 45.07 0.13 6.77 16 15 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 16 N -0.73 -35.77 5.12 -322.58 -1.65 -37.42 16 17 C -0.24 -12.79 9.93 84.03 0.83 -11.96 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 20 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 21 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.10 3.74 5.11 86.36 0.44 4.18 16 26 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.06 1.67 7.65 -2.39 -0.02 1.65 16 29 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.14 4.25 7.40 -2.91 -0.02 4.23 16 31 H 0.09 2.52 7.00 -2.39 -0.02 2.51 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 37 H 0.38 19.72 7.80 -92.71 -0.72 18.99 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 3.44 4.68 -2.39 -0.01 3.43 16 Total: -1.00 -70.20 326.19 2.08 -68.12 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.49 Total: 35.06 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.51 Total: 2.82 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -4.89 Total: -129.72 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.20 2.08 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998856730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.798 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds