Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39834 * 126.45702 * 2 1 4 4 C 1.35450 * 107.86522 * 180.30017 * 3 2 1 5 5 N 1.35537 * 108.87255 * 359.74791 * 4 3 2 6 6 H 0.96995 * 125.68087 * 179.97438 * 5 4 3 7 7 C 1.37649 * 108.64093 * 359.97438 * 5 4 3 8 8 C 1.46688 * 126.23408 * 180.02562 * 7 5 4 9 9 O 1.21691 * 119.99803 * 288.33988 * 8 7 5 10 10 N 1.34769 * 119.99948 * 108.33231 * 8 7 5 11 11 C 1.46939 * 120.60480 * 354.34493 * 10 8 7 12 12 C 1.53192 * 108.76967 * 233.57184 * 11 10 8 13 13 C 1.53036 * 109.34268 * 305.41691 * 12 11 10 14 14 C 1.53045 * 109.54023 * 61.34823 * 13 12 11 15 15 H 1.09000 * 109.49613 * 58.58463 * 14 13 12 16 16 N 1.46497 * 109.49793 * 178.68233 * 14 13 12 17 17 C 1.36940 * 119.99787 * 204.99749 * 16 14 13 18 18 H 1.08000 * 120.00284 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99688 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99918 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46924 * 90.00642 * 21 19 17 23 23 H 1.48508 * 109.46990 * 210.00001 * 21 19 17 24 24 H 1.48492 * 109.47536 * 330.00397 * 21 19 17 25 25 C 1.46928 * 120.62944 * 174.36232 * 10 8 7 26 26 H 1.08999 * 109.47231 * 270.13073 * 1 2 3 27 27 H 1.09002 * 109.47200 * 30.13513 * 1 2 3 28 28 H 1.09007 * 109.47161 * 150.13376 * 1 2 3 29 29 H 1.07999 * 126.06511 * 0.02728 * 3 2 1 30 30 H 1.07997 * 125.56734 * 179.77922 * 4 3 2 31 31 H 1.09003 * 109.56191 * 113.80550 * 11 10 8 32 32 H 1.08996 * 109.61507 * 353.37550 * 11 10 8 33 33 H 1.08997 * 109.49720 * 185.44423 * 12 11 10 34 34 H 1.09000 * 109.49640 * 65.38208 * 12 11 10 35 35 H 1.09001 * 109.46355 * 181.36896 * 13 12 11 36 36 H 1.08994 * 109.46060 * 301.32770 * 13 12 11 37 37 H 0.97000 * 120.00259 * 25.00806 * 16 14 13 38 38 H 0.96998 * 119.99774 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.58601 * 6.60843 * 25 10 8 40 40 H 1.08994 * 109.70557 * 246.24769 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 -0.0068 5 7 3.6284 -0.6625 -0.0054 6 1 4.4190 -1.2244 -0.0096 7 6 2.3263 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0077 9 8 2.0194 -3.1903 -0.9925 10 7 1.3454 -3.0417 1.1196 11 6 1.2953 -2.2721 2.3703 12 6 1.9335 -3.1041 3.4870 13 6 1.2442 -4.4685 3.5598 14 6 1.4360 -5.2102 2.2349 15 1 2.5010 -5.3293 2.0355 16 7 0.8028 -6.5288 2.3165 17 6 1.2429 -7.5503 1.5178 18 1 2.0571 -7.3840 0.8279 19 6 0.6425 -8.7995 1.5947 20 7 1.0658 -9.7815 0.8274 21 14 -0.7652 -9.0872 2.7884 22 1 -2.0541 -8.7843 2.1160 23 1 -0.7583 -10.5053 3.2294 24 1 -0.6025 -8.2010 3.9687 25 6 0.7913 -4.4025 1.1041 26 1 -0.3633 0.0023 1.0276 27 1 -0.3634 0.8888 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 2.0135 2.1548 0.0004 30 1 4.4972 1.3252 -0.0119 31 1 0.2576 -2.0550 2.6239 32 1 1.8466 -1.3398 2.2485 33 1 1.8165 -2.5862 4.4389 34 1 2.9939 -3.2431 3.2764 35 1 1.6805 -5.0531 4.3697 36 1 0.1796 -4.3280 3.7463 37 1 0.0717 -6.6782 2.9363 38 1 0.6460 -10.6543 0.8809 39 1 1.0102 -4.8752 0.1466 40 1 -0.2876 -4.3617 1.2533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999063073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 22.395196 kcal Electronic energy + Delta-G solvation = -21911.610988 eV Core-core repulsion = 18727.256526 eV Total energy + Delta-G solvation = -3184.354462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44160 -39.45123 -37.27598 -34.63443 -32.81357 -32.27681 -31.35919 -29.99501 -28.67919 -27.06567 -25.11382 -23.86104 -21.97128 -21.64082 -20.76346 -19.86854 -18.83664 -17.80501 -17.56487 -16.45992 -15.44172 -15.17085 -14.65471 -14.32245 -14.22553 -14.12378 -13.72134 -13.51684 -13.25379 -13.09768 -12.83603 -12.67939 -12.58459 -12.43949 -12.28998 -11.66074 -11.62189 -11.23785 -10.94207 -10.74931 -10.64550 -10.30083 -9.93168 -9.87184 -9.59989 -9.13342 -8.88562 -8.43020 -8.15840 -7.31878 -5.78657 -3.16396 1.80181 2.44635 2.70701 3.12291 3.35400 3.38003 3.43578 3.50803 4.56535 4.61378 4.83674 4.91247 5.01146 5.05216 5.17684 5.22581 5.36885 5.42876 5.55610 5.59191 5.65763 5.69994 5.77787 5.86634 5.90550 5.95172 6.00916 6.06041 6.17437 6.21571 6.36189 6.60919 6.69092 6.74042 6.86208 6.88846 7.32291 7.54972 7.96934 8.27225 8.40108 9.17017 9.88568 10.06954 11.39343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.004335 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.495010 B = 6458.092166 C = 6711.161118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.121 4.121 3 C -0.202 4.202 4 C 0.003 3.997 5 N -0.530 5.530 6 H 0.419 0.581 7 C -0.028 4.028 8 C 0.581 3.419 9 O -0.530 6.530 10 N -0.592 5.592 11 C 0.109 3.891 12 C -0.129 4.129 13 C -0.130 4.130 14 C 0.174 3.826 15 H 0.059 0.941 16 N -0.742 5.742 17 C -0.250 4.250 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.092 3.908 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 23.690 4.589 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C -0.226 4.226 4 C -0.131 4.131 5 N -0.124 5.124 6 H 0.256 0.744 7 C -0.143 4.143 8 C 0.367 3.633 9 O -0.406 6.406 10 N -0.325 5.325 11 C -0.014 4.014 12 C -0.167 4.167 13 C -0.168 4.168 14 C 0.063 3.937 15 H 0.077 0.923 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.578 5.578 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.033 4.033 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.447 22.997 3.885 23.451 hybrid contribution -0.609 -0.502 0.780 1.110 sum 1.839 22.495 4.665 23.047 Atomic orbital electron populations 1.20205 0.89846 1.02338 1.01808 1.19782 0.95362 0.90973 1.06769 1.20671 0.91786 0.98450 1.11736 1.21879 0.99451 0.82785 1.08994 1.41810 1.06902 1.07117 1.56566 0.74351 1.20089 0.84477 0.93692 1.16056 1.17231 0.78270 0.84437 0.83389 1.90874 1.55315 1.61247 1.33127 1.48151 1.58726 1.16305 1.09337 1.21744 1.01350 0.94618 0.83693 1.21868 1.00411 0.96433 0.98018 1.21872 1.00569 0.95273 0.99099 1.20444 0.96872 0.84929 0.91428 0.92335 1.42720 1.41268 1.06921 1.47496 1.19100 1.15089 0.88638 1.15102 0.89077 1.24682 0.99227 0.95832 0.99075 1.69709 1.43973 1.02371 1.41715 0.86559 0.83366 0.77213 0.81428 1.20981 1.21686 1.20290 1.22761 0.97566 0.79228 1.03703 0.91621 0.91571 0.92105 0.84312 0.81494 0.91370 0.89813 0.90862 0.91665 0.91319 0.92031 0.80420 0.92975 0.88571 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.20 36.00 0.37 -0.52 16 2 C -0.12 -1.44 5.75 -104.16 -0.60 -2.04 16 3 C -0.20 -1.99 10.76 -39.98 -0.43 -2.42 16 4 C 0.00 0.03 11.89 -16.91 -0.20 -0.17 16 5 N -0.53 -5.61 6.10 -9.39 -0.06 -5.66 16 6 H 0.42 3.69 8.96 -40.82 -0.37 3.33 16 7 C -0.03 -0.38 5.07 -81.98 -0.42 -0.79 16 8 C 0.58 9.70 7.18 -12.85 -0.09 9.61 16 9 O -0.53 -11.23 16.53 5.20 0.09 -11.14 16 10 N -0.59 -9.04 2.97 -174.30 -0.52 -9.56 16 11 C 0.11 1.26 6.26 -3.70 -0.02 1.24 16 12 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 13 C -0.13 -1.89 5.36 -26.69 -0.14 -2.03 16 14 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 15 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 16 N -0.74 -17.26 4.93 -53.31 -0.26 -17.52 16 17 C -0.25 -7.05 10.41 -15.06 -0.16 -7.21 16 18 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -29.40 13.97 55.49 0.78 -28.63 16 21 Si 0.88 21.89 27.73 -169.99 -4.71 17.17 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 25 C 0.09 1.68 6.03 -3.71 -0.02 1.66 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.89 6.10 -51.93 -0.32 0.58 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.10 2.12 6.99 -51.93 -0.36 1.76 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -34.46 327.75 -7.85 -42.32 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.93 Total: 9.15 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.17 Total: -1.06 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.06 Total: -61.37 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.46 -7.85 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999063073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.713 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds