Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39834 * 126.45702 * 2 1 4 4 C 1.35450 * 107.86522 * 180.30017 * 3 2 1 5 5 N 1.35537 * 108.87255 * 359.74791 * 4 3 2 6 6 H 0.96995 * 125.68087 * 179.97438 * 5 4 3 7 7 C 1.37649 * 108.64093 * 359.97438 * 5 4 3 8 8 C 1.46688 * 126.23408 * 180.02562 * 7 5 4 9 9 O 1.21691 * 119.99803 * 288.33988 * 8 7 5 10 10 N 1.34769 * 119.99948 * 108.33231 * 8 7 5 11 11 C 1.46939 * 120.60480 * 354.34493 * 10 8 7 12 12 C 1.53192 * 108.76967 * 233.57184 * 11 10 8 13 13 C 1.53036 * 109.34268 * 305.41691 * 12 11 10 14 14 C 1.53045 * 109.54023 * 61.34823 * 13 12 11 15 15 H 1.09000 * 109.49613 * 58.58463 * 14 13 12 16 16 N 1.46497 * 109.49793 * 178.68233 * 14 13 12 17 17 C 1.36940 * 119.99787 * 204.99749 * 16 14 13 18 18 H 1.08000 * 120.00284 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99688 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99918 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00058 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46924 * 90.00642 * 21 19 17 23 23 H 1.48508 * 109.46990 * 210.00001 * 21 19 17 24 24 H 1.48492 * 109.47536 * 330.00397 * 21 19 17 25 25 C 1.46928 * 120.62944 * 174.36232 * 10 8 7 26 26 H 1.08999 * 109.47231 * 270.13073 * 1 2 3 27 27 H 1.09002 * 109.47200 * 30.13513 * 1 2 3 28 28 H 1.09007 * 109.47161 * 150.13376 * 1 2 3 29 29 H 1.07999 * 126.06511 * 0.02728 * 3 2 1 30 30 H 1.07997 * 125.56734 * 179.77922 * 4 3 2 31 31 H 1.09003 * 109.56191 * 113.80550 * 11 10 8 32 32 H 1.08996 * 109.61507 * 353.37550 * 11 10 8 33 33 H 1.08997 * 109.49720 * 185.44423 * 12 11 10 34 34 H 1.09000 * 109.49640 * 65.38208 * 12 11 10 35 35 H 1.09001 * 109.46355 * 181.36896 * 13 12 11 36 36 H 1.08994 * 109.46060 * 301.32770 * 13 12 11 37 37 H 0.97000 * 120.00259 * 25.00806 * 16 14 13 38 38 H 0.96998 * 119.99774 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.58601 * 6.60843 * 25 10 8 40 40 H 1.08994 * 109.70557 * 246.24769 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 -0.0068 5 7 3.6284 -0.6625 -0.0054 6 1 4.4190 -1.2244 -0.0096 7 6 2.3263 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0077 9 8 2.0194 -3.1903 -0.9925 10 7 1.3454 -3.0417 1.1196 11 6 1.2953 -2.2721 2.3703 12 6 1.9335 -3.1041 3.4870 13 6 1.2442 -4.4685 3.5598 14 6 1.4360 -5.2102 2.2349 15 1 2.5010 -5.3293 2.0355 16 7 0.8028 -6.5288 2.3165 17 6 1.2429 -7.5503 1.5178 18 1 2.0571 -7.3840 0.8279 19 6 0.6425 -8.7995 1.5947 20 7 1.0658 -9.7815 0.8274 21 14 -0.7652 -9.0872 2.7884 22 1 -2.0541 -8.7843 2.1160 23 1 -0.7583 -10.5053 3.2294 24 1 -0.6025 -8.2010 3.9687 25 6 0.7913 -4.4025 1.1041 26 1 -0.3633 0.0023 1.0276 27 1 -0.3634 0.8888 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 2.0135 2.1548 0.0004 30 1 4.4972 1.3252 -0.0119 31 1 0.2576 -2.0550 2.6239 32 1 1.8466 -1.3398 2.2485 33 1 1.8165 -2.5862 4.4389 34 1 2.9939 -3.2431 3.2764 35 1 1.6805 -5.0531 4.3697 36 1 0.1796 -4.3280 3.7463 37 1 0.0717 -6.6782 2.9363 38 1 0.6460 -10.6543 0.8809 39 1 1.0102 -4.8752 0.1466 40 1 -0.2876 -4.3617 1.2533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999063073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = -2.524906 kcal Electronic energy + Delta-G solvation = -21912.691605 eV Core-core repulsion = 18727.256526 eV Total energy + Delta-G solvation = -3185.435079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35122 -40.67198 -38.70215 -36.35704 -34.11304 -33.49498 -32.96513 -31.16018 -30.05181 -28.02046 -26.27209 -25.68754 -23.17828 -23.02128 -21.71067 -21.15095 -19.80905 -19.57781 -18.86797 -17.72005 -16.77236 -16.58285 -16.26198 -15.72703 -15.46340 -15.14163 -15.06185 -14.78471 -14.48376 -14.23912 -14.10966 -13.86769 -13.82730 -13.57506 -13.34007 -13.13527 -12.98034 -12.61216 -12.46298 -12.11040 -11.96437 -11.89155 -11.80891 -11.42291 -11.26413 -11.07685 -9.90737 -9.65516 -9.30720 -9.01747 -8.06247 -5.43035 0.86527 1.32552 1.36489 1.42318 1.49080 1.87048 2.03095 2.46188 2.58150 3.24414 3.48783 3.57250 3.94044 4.01881 4.09169 4.22709 4.24978 4.29922 4.31544 4.46545 4.57188 4.65593 4.81660 4.84778 4.88134 4.89894 4.98098 5.08172 5.11056 5.18660 5.31918 5.39655 5.42202 5.44218 5.71898 5.92917 6.06197 6.17207 6.31510 6.59559 6.99332 7.03320 7.74715 7.97539 9.15616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.004335 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.495010 B = 6458.092166 C = 6711.161118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.117 4.117 3 C -0.214 4.214 4 C 0.028 3.972 5 N -0.531 5.531 6 H 0.424 0.576 7 C -0.069 4.069 8 C 0.579 3.421 9 O -0.594 6.594 10 N -0.587 5.587 11 C 0.107 3.893 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.171 3.829 15 H 0.028 0.972 16 N -0.742 5.742 17 C -0.241 4.241 18 H 0.043 0.957 19 C -0.063 4.063 20 N -0.985 5.985 21 Si 0.963 3.037 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.242 1.242 25 C 0.103 3.897 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.164 0.836 30 H 0.209 0.791 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.372 0.628 38 H 0.259 0.741 39 H 0.044 0.956 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 27.498 7.649 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.238 4.238 4 C -0.107 4.107 5 N -0.126 5.126 6 H 0.262 0.738 7 C -0.183 4.183 8 C 0.367 3.633 9 O -0.474 6.474 10 N -0.318 5.318 11 C -0.014 4.014 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.062 3.938 15 H 0.047 0.953 16 N -0.386 5.386 17 C -0.372 4.372 18 H 0.061 0.939 19 C -0.254 4.254 20 N -0.635 5.635 21 Si 0.789 3.211 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.166 1.166 25 C -0.022 4.022 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.182 0.818 30 H 0.226 0.774 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.206 0.794 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.515 26.888 7.006 27.827 hybrid contribution -0.201 -1.568 -0.263 1.602 sum 1.314 25.320 6.742 26.236 Atomic orbital electron populations 1.20263 0.89296 1.01901 1.02834 1.20094 0.95997 0.91138 1.05335 1.21012 0.91743 0.98987 1.12063 1.22616 1.00738 0.81950 1.05424 1.41905 1.06141 1.08081 1.56437 0.73784 1.19635 0.86245 0.91814 1.20610 1.17801 0.77210 0.85683 0.82577 1.90831 1.57853 1.63299 1.35434 1.48184 1.57764 1.15115 1.10772 1.22060 1.03147 0.94664 0.81563 1.21865 0.99421 0.94702 0.99838 1.21802 1.02304 0.96311 0.95463 1.20609 0.94759 0.83814 0.94627 0.95336 1.42624 1.41698 1.07422 1.46833 1.18955 1.13499 0.90250 1.14465 0.93886 1.25626 1.02840 0.95314 1.01668 1.69921 1.46213 1.03020 1.44356 0.85299 0.78906 0.77244 0.79631 1.20306 1.22149 1.16612 1.22282 0.98143 0.81053 1.00720 0.89818 0.89810 0.94690 0.81828 0.77445 0.89087 0.88111 0.86687 0.92467 0.91117 0.90117 0.79413 0.93189 0.93736 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 10.20 71.24 0.73 -0.90 16 2 C -0.12 -2.54 5.75 -19.57 -0.11 -2.65 16 3 C -0.21 -3.42 10.76 22.01 0.24 -3.18 16 4 C 0.03 0.38 11.89 83.48 0.99 1.37 16 5 N -0.53 -10.36 6.10 -183.61 -1.12 -11.48 16 6 H 0.42 7.12 8.96 -92.71 -0.83 6.29 16 7 C -0.07 -1.81 5.07 40.35 0.20 -1.60 16 8 C 0.58 20.18 7.18 86.45 0.62 20.80 16 9 O -0.59 -27.38 16.53 -4.32 -0.07 -27.45 16 10 N -0.59 -18.09 2.97 -823.58 -2.45 -20.54 16 11 C 0.11 2.17 6.26 86.36 0.54 2.71 16 12 C -0.12 -2.33 6.08 30.67 0.19 -2.14 16 13 C -0.12 -3.20 5.36 30.62 0.16 -3.03 16 14 C 0.17 6.63 2.92 45.07 0.13 6.76 16 15 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 16 N -0.74 -34.94 4.93 -322.56 -1.59 -36.53 16 17 C -0.24 -14.29 10.41 84.03 0.88 -13.41 16 18 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 19 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.99 -65.15 13.97 21.65 0.30 -64.84 16 21 Si 0.96 45.44 27.73 68.60 1.90 47.34 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.24 -9.94 6.52 99.48 0.65 -9.29 16 25 C 0.10 3.96 6.03 86.36 0.52 4.48 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.03 0.83 7.96 -2.38 -0.02 0.82 16 29 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.81 6.10 -2.39 -0.01 1.79 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.37 16.13 5.66 -92.71 -0.52 15.60 16 38 H 0.26 16.21 8.31 -92.71 -0.77 15.43 16 39 H 0.04 2.16 6.99 -2.39 -0.02 2.14 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -82.57 327.75 2.17 -80.40 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.36 Total: 27.25 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.55 Total: 5.86 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -4.86 Total: -133.40 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -82.57 2.17 -80.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999063073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.872 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds