Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39834 * 126.45903 * 2 1 4 4 C 1.35455 * 107.86876 * 180.26504 * 3 2 1 5 5 N 1.35532 * 108.86838 * 359.73879 * 4 3 2 6 6 H 0.97000 * 125.67981 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.64431 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23316 * 180.02562 * 7 5 4 9 9 O 1.21699 * 120.00067 * 288.32671 * 8 7 5 10 10 N 1.34782 * 120.00242 * 108.32529 * 8 7 5 11 11 C 1.46925 * 120.63077 * 174.36274 * 10 8 7 12 12 C 1.53186 * 108.77629 * 126.41310 * 11 10 8 13 13 C 1.53038 * 109.31320 * 54.63687 * 12 11 10 14 14 C 1.53049 * 109.53491 * 298.63546 * 13 12 11 15 15 H 1.08997 * 109.49309 * 301.38074 * 14 13 12 16 16 N 1.46503 * 109.49580 * 181.31556 * 14 13 12 17 17 C 1.36936 * 119.99870 * 154.99939 * 16 14 13 18 18 H 1.08000 * 119.99862 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00191 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99912 * 359.72384 * 19 17 16 21 21 Si 1.86797 * 120.00223 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47288 * 90.00162 * 21 19 17 23 23 H 1.48502 * 109.47166 * 210.00304 * 21 19 17 24 24 H 1.48511 * 109.47149 * 329.99912 * 21 19 17 25 25 C 1.46926 * 120.62850 * 354.38678 * 10 8 7 26 26 H 1.09004 * 109.47513 * 270.18214 * 1 2 3 27 27 H 1.09003 * 109.47595 * 30.18170 * 1 2 3 28 28 H 1.09001 * 109.47346 * 150.18395 * 1 2 3 29 29 H 1.08004 * 126.06996 * 0.02562 * 3 2 1 30 30 H 1.08000 * 125.56648 * 179.76440 * 4 3 2 31 31 H 1.09000 * 109.58818 * 6.62117 * 11 10 8 32 32 H 1.09005 * 109.58726 * 246.20197 * 11 10 8 33 33 H 1.08994 * 109.50015 * 294.67932 * 12 11 10 34 34 H 1.09001 * 109.49907 * 174.58417 * 12 11 10 35 35 H 1.08994 * 109.46582 * 178.61477 * 13 12 11 36 36 H 1.09000 * 109.45212 * 58.64095 * 13 12 11 37 37 H 0.97001 * 120.00301 * 334.99887 * 16 14 13 38 38 H 0.97002 * 119.99797 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.58346 * 113.80015 * 25 10 8 40 40 H 1.09000 * 109.58358 * 353.37025 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6625 -0.0039 6 1 4.4190 -1.2244 -0.0074 7 6 2.3262 -1.1089 0.0030 8 6 1.8898 -2.5092 0.0078 9 8 2.0206 -3.1907 -0.9920 10 7 1.3440 -3.0412 1.1194 11 6 0.7901 -4.4019 1.1038 12 6 1.4330 -5.2090 2.2360 13 6 1.2390 -4.4666 3.5601 14 6 1.9285 -3.1022 3.4876 15 1 2.9892 -3.2413 3.2788 16 7 1.7692 -2.4053 4.7664 17 6 2.6755 -1.4505 5.1433 18 1 3.5079 -1.2115 4.4982 19 6 2.5248 -0.7905 6.3552 20 7 1.5078 -1.0786 7.1395 21 14 3.7615 0.5115 6.8697 22 1 3.3173 1.8392 6.3750 23 1 3.8599 0.5428 8.3512 24 1 5.0908 0.1873 6.2922 25 6 1.2912 -2.2712 2.3696 26 1 -0.3634 0.0033 1.0277 27 1 -0.3634 0.8883 -0.5166 28 1 -0.3634 -0.8916 -0.5110 29 1 2.0136 2.1549 0.0004 30 1 4.4972 1.3253 -0.0111 31 1 1.0103 -4.8752 0.1469 32 1 -0.2889 -4.3590 1.2527 33 1 2.4982 -5.3283 2.0384 34 1 0.9617 -6.1900 2.2966 35 1 1.6740 -5.0507 4.3711 36 1 0.1740 -4.3258 3.7447 37 1 1.0217 -2.6202 5.3460 38 1 1.4027 -0.6176 7.9865 39 1 0.2532 -2.0545 2.6217 40 1 1.8423 -1.3387 2.2479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999063077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = -3.553993 kcal Electronic energy + Delta-G solvation = -22277.606654 eV Core-core repulsion = 19092.126951 eV Total energy + Delta-G solvation = -3185.479703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34292 -40.64304 -38.66052 -36.05065 -34.09190 -33.49818 -32.98783 -30.62186 -29.86755 -28.02549 -26.28032 -25.86459 -23.65965 -22.55753 -21.72145 -21.05214 -19.80053 -19.15094 -18.83298 -17.77228 -16.77289 -16.46963 -16.17019 -15.56677 -15.44622 -15.22213 -15.17105 -14.79591 -14.48262 -14.10749 -13.95334 -13.81524 -13.64742 -13.60094 -13.15816 -13.08914 -12.88453 -12.52892 -12.49265 -12.20770 -12.00054 -11.94481 -11.62078 -11.47225 -11.21002 -10.99343 -9.82070 -9.66638 -9.04224 -8.97392 -7.94791 -5.24060 0.86820 1.29736 1.47907 1.48932 1.56422 1.88148 2.05304 2.51932 2.59649 3.38917 3.50914 3.85788 3.93916 4.01520 4.18753 4.21499 4.27046 4.35728 4.37322 4.44119 4.58854 4.69691 4.78969 4.84502 4.88939 4.91277 4.96309 5.08085 5.08328 5.14019 5.35208 5.37858 5.42792 5.45628 5.54286 5.90446 6.05078 6.22060 6.28911 6.59228 6.96613 7.34152 8.05495 8.30881 9.27975 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.007010 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.957261 B = 3993.338763 C = 5350.901554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.127 4.127 3 C -0.221 4.221 4 C 0.021 3.979 5 N -0.529 5.529 6 H 0.425 0.575 7 C -0.070 4.070 8 C 0.591 3.409 9 O -0.578 6.578 10 N -0.586 5.586 11 C 0.106 3.894 12 C -0.116 4.116 13 C -0.120 4.120 14 C 0.167 3.833 15 H 0.034 0.966 16 N -0.727 5.727 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.965 3.035 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.272 1.272 25 C 0.110 3.890 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.157 0.843 30 H 0.206 0.794 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.063 0.937 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -1.380 -13.670 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C -0.245 4.245 4 C -0.114 4.114 5 N -0.124 5.124 6 H 0.263 0.737 7 C -0.184 4.184 8 C 0.378 3.622 9 O -0.458 6.458 10 N -0.318 5.318 11 C -0.016 4.016 12 C -0.155 4.155 13 C -0.158 4.158 14 C 0.057 3.943 15 H 0.052 0.948 16 N -0.367 5.367 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.260 4.260 20 N -0.615 5.615 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.197 1.197 25 C -0.016 4.016 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.175 0.825 30 H 0.222 0.778 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.658 -1.772 -14.160 14.286 hybrid contribution 0.687 0.571 0.871 1.248 sum 1.344 -1.201 -13.289 13.411 Atomic orbital electron populations 1.20208 0.89295 1.02466 1.01915 1.20117 0.96173 0.91511 1.05701 1.21017 0.92214 0.99077 1.12205 1.22530 1.00519 0.82424 1.05911 1.41812 1.06318 1.07802 1.56457 0.73677 1.19867 0.85884 0.93069 1.19563 1.17397 0.77157 0.85018 0.82585 1.90756 1.58089 1.62602 1.34382 1.48201 1.57652 1.16237 1.09681 1.21862 0.98572 0.80613 1.00534 1.21809 1.01352 0.99470 0.92850 1.21757 1.01028 0.95006 0.98001 1.20625 0.96902 0.91586 0.85152 0.94798 1.42496 1.30958 1.44799 1.18446 1.19472 1.04141 1.12218 1.01148 0.91243 1.25455 1.00233 1.02638 0.97693 1.69796 1.32543 1.46480 1.12664 0.85266 0.79057 0.79491 0.76718 1.21337 1.22287 1.19702 1.22470 1.01338 0.95316 0.82445 0.91804 0.89738 0.93126 0.82496 0.77772 0.89215 0.89556 0.92330 0.87545 0.91868 0.91243 0.79033 0.93968 0.91850 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 10.20 71.23 0.73 -1.43 16 2 C -0.13 -3.79 5.74 -19.57 -0.11 -3.90 16 3 C -0.22 -5.74 10.76 22.01 0.24 -5.51 16 4 C 0.02 0.48 11.89 83.48 0.99 1.47 16 5 N -0.53 -13.94 6.10 -183.62 -1.12 -15.06 16 6 H 0.43 9.37 8.96 -92.71 -0.83 8.53 16 7 C -0.07 -2.21 5.08 40.35 0.20 -2.01 16 8 C 0.59 20.01 7.18 86.45 0.62 20.63 16 9 O -0.58 -22.16 16.53 -4.35 -0.07 -22.24 16 10 N -0.59 -18.16 2.97 -823.62 -2.45 -20.61 16 11 C 0.11 2.69 6.44 86.36 0.56 3.24 16 12 C -0.12 -2.76 6.08 30.67 0.19 -2.57 16 13 C -0.12 -3.58 5.35 30.62 0.16 -3.41 16 14 C 0.17 6.29 2.92 45.07 0.13 6.42 16 15 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 16 N -0.73 -34.66 5.12 -322.56 -1.65 -36.32 16 17 C -0.24 -12.66 9.93 84.03 0.83 -11.83 16 18 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 19 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 20 N -0.96 -56.96 13.06 21.65 0.28 -56.68 16 21 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.11 3.81 5.84 86.36 0.50 4.31 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.36 7.96 -2.39 -0.02 1.34 16 29 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.21 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.09 2.33 6.99 -2.39 -0.02 2.31 16 32 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.38 19.23 7.80 -92.71 -0.72 18.51 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.71 6.10 -2.39 -0.01 2.69 16 Total: -1.00 -67.59 330.86 2.03 -65.56 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.50 Total: 36.34 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.51 Total: 2.16 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -4.94 Total: -128.66 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.24 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.59 2.03 -65.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999063077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds