Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34491 * 126.83437 * 2 1 4 4 N 1.36454 * 108.85348 * 180.25113 * 3 2 1 5 5 H 0.97000 * 124.84469 * 179.76573 * 4 3 2 6 6 C 1.34655 * 110.29786 * 359.74640 * 4 3 2 7 7 C 1.36768 * 108.39489 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.93440 * 179.97438 * 7 6 4 9 9 O 1.21631 * 119.99730 * 214.69700 * 8 7 6 10 10 N 1.34778 * 120.00424 * 34.69589 * 8 7 6 11 11 C 1.46496 * 119.99731 * 5.88306 * 10 8 7 12 12 C 1.46496 * 119.99812 * 185.87857 * 10 8 7 13 13 C 1.53778 * 113.68881 * 82.34685 * 12 10 8 14 14 C 1.53785 * 87.08246 * 89.12274 * 13 12 10 15 15 N 1.46500 * 113.61304 * 270.88509 * 14 13 12 16 16 C 1.36945 * 119.99775 * 185.83838 * 15 14 13 17 17 H 1.07997 * 119.99674 * 4.62310 * 16 15 14 18 18 C 1.38809 * 119.99732 * 184.62946 * 16 15 14 19 19 N 1.31618 * 119.99888 * 174.77523 * 18 16 15 20 20 Si 1.86802 * 120.00185 * 354.77969 * 18 16 15 21 21 H 1.48493 * 109.47262 * 94.99846 * 20 18 16 22 22 H 1.48499 * 109.46781 * 215.00090 * 20 18 16 23 23 H 1.48502 * 109.46769 * 334.99638 * 20 18 16 24 24 C 1.53772 * 87.08061 * 25.43400 * 14 13 12 25 25 H 1.08998 * 109.47324 * 270.15603 * 1 2 3 26 26 H 1.09008 * 109.46855 * 30.15116 * 1 2 3 27 27 H 1.09000 * 109.47270 * 150.14970 * 1 2 3 28 28 H 1.08005 * 125.57405 * 0.03570 * 3 2 1 29 29 H 1.07998 * 125.79433 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.47268 * 275.23485 * 11 10 8 31 31 H 1.09005 * 109.47467 * 35.23281 * 11 10 8 32 32 H 1.09003 * 109.47396 * 155.22976 * 11 10 8 33 33 H 1.09000 * 112.85765 * 311.07639 * 12 10 8 34 34 H 1.09004 * 113.61868 * 203.66857 * 13 12 10 35 35 H 1.08999 * 113.61604 * 334.57748 * 13 12 10 36 36 H 1.09007 * 113.69026 * 139.99379 * 14 13 12 37 37 H 0.96994 * 120.00460 * 5.83096 * 15 14 13 38 38 H 0.96998 * 120.00009 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61489 * 220.01898 * 24 14 13 40 40 H 1.08996 * 113.61802 * 89.11633 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0038 7 6 2.3863 -1.1740 0.0026 8 6 1.9749 -2.5880 0.0061 9 8 0.9707 -2.9306 -0.5885 10 7 2.7111 -3.5025 0.6682 11 6 3.8458 -3.0738 1.4897 12 6 2.3765 -4.9251 0.5663 13 6 2.9372 -5.6028 -0.6951 14 6 4.2026 -5.9046 0.1250 15 7 5.2093 -4.8420 0.0631 16 6 6.4348 -5.0250 0.6463 17 1 6.6863 -5.9787 1.0863 18 6 7.3535 -3.9848 0.6718 19 7 8.4897 -4.1261 1.3209 20 14 6.9772 -2.3844 -0.2151 21 1 6.3866 -1.4150 0.7422 22 1 8.2320 -1.8232 -0.7771 23 1 6.0141 -2.6429 -1.3155 24 6 3.3122 -5.8375 1.3769 25 1 -0.3634 0.0028 1.0276 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9868 2.1060 0.0005 29 1 4.5664 -1.2860 -0.0069 30 1 4.7294 -2.9658 0.8608 31 1 3.6143 -2.1172 1.9583 32 1 4.0379 -3.8192 2.2614 33 1 1.3183 -5.1243 0.7353 34 1 2.3866 -6.4953 -0.9926 35 1 3.1070 -4.9136 -1.5222 36 1 4.6198 -6.8943 -0.0616 37 1 5.0079 -4.0089 -0.3910 38 1 9.1318 -3.3993 1.3385 39 1 3.7847 -5.3376 2.2225 40 1 2.8641 -6.7940 1.6458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999825807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = 76.316596 kcal Electronic energy + Delta-G solvation = -22826.944197 eV Core-core repulsion = 19644.927942 eV Total energy + Delta-G solvation = -3182.016255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18940 -39.84823 -37.60350 -34.06710 -33.42263 -32.37464 -30.75788 -29.54689 -26.87043 -26.40253 -25.15252 -24.52134 -23.14721 -21.52356 -20.09199 -18.77880 -18.20524 -17.97124 -17.38040 -16.34434 -15.56866 -15.23117 -14.97440 -14.49307 -14.12622 -13.91062 -13.75384 -13.36783 -13.02268 -12.80862 -12.66302 -12.57696 -12.33610 -12.07568 -11.93121 -11.36637 -11.27529 -11.17685 -10.95373 -10.83811 -10.38273 -10.30267 -9.73272 -9.65120 -9.39268 -8.97991 -8.51889 -8.20203 -8.05373 -7.33241 -5.91903 -3.26143 2.00929 2.47114 3.00691 3.15967 3.19986 3.26451 3.44013 3.68836 4.36729 4.87587 4.98501 5.08081 5.11771 5.21764 5.26513 5.34781 5.44965 5.56792 5.64943 5.69241 5.75415 5.85958 5.95563 6.01610 6.10833 6.12009 6.26477 6.33357 6.34194 6.45717 6.53441 6.73108 6.82461 6.85097 6.98804 7.14771 7.48620 7.88060 7.89478 8.29095 8.65847 9.06564 9.78351 10.00455 11.26458 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.008385 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.459867 B = 3338.607089 C = 4699.488110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.117 4.117 3 C -0.027 4.027 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.041 3.959 7 C -0.221 4.221 8 C 0.590 3.410 9 O -0.549 6.549 10 N -0.588 5.588 11 C 0.071 3.929 12 C 0.130 3.870 13 C -0.162 4.162 14 C 0.169 3.831 15 N -0.733 5.733 16 C -0.238 4.238 17 H 0.095 0.905 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.857 3.143 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.179 4.179 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 7.858 -0.504 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C -0.154 4.154 4 N -0.146 5.146 5 H 0.253 0.747 6 C -0.095 4.095 7 C -0.231 4.231 8 C 0.379 3.621 9 O -0.428 6.428 10 N -0.320 5.320 11 C -0.071 4.071 12 C 0.027 3.973 13 C -0.201 4.201 14 C 0.058 3.942 15 N -0.377 5.377 16 C -0.367 4.367 17 H 0.113 0.887 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.689 3.311 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.220 4.220 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.199 0.801 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.012 7.685 -0.690 14.277 hybrid contribution 0.554 1.538 -0.600 1.742 sum -11.458 9.223 -1.290 14.765 Atomic orbital electron populations 1.20172 0.89545 1.02741 1.01546 1.20475 0.95367 0.90318 1.06251 1.21530 0.82458 0.99023 1.12417 1.41510 1.08284 1.06677 1.58111 0.74735 1.22455 0.99160 0.83826 1.04058 1.20330 0.92545 0.93001 1.17231 1.17409 0.82477 0.84013 0.78184 1.90691 1.25858 1.81264 1.44945 1.47415 1.31046 1.05669 1.47880 1.22407 0.88425 1.00123 0.96128 1.21751 0.98146 0.79745 0.97706 1.23695 0.98387 1.00647 0.97384 1.21111 0.87599 0.92825 0.92643 1.42878 1.12702 1.15568 1.66563 1.19106 0.89300 0.99369 1.28974 0.88736 1.24611 0.96773 0.96994 1.00330 1.69659 1.09352 1.32724 1.45746 0.87071 0.77662 0.86132 0.80239 1.20627 1.21509 1.19967 1.24104 0.98526 0.98556 1.00798 0.92183 0.92279 0.90390 0.81490 0.81343 0.91136 0.92757 0.89134 0.90065 0.89166 0.91639 0.92047 0.80110 0.92924 0.89685 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.29 36.00 0.37 -0.70 16 2 C -0.12 -1.75 6.35 -102.54 -0.65 -2.40 16 3 C -0.03 -0.32 11.82 -16.82 -0.20 -0.52 16 4 N -0.55 -7.02 5.90 -12.84 -0.08 -7.10 16 5 H 0.42 3.92 8.96 -40.82 -0.37 3.56 16 6 C 0.04 0.67 9.91 -16.84 -0.17 0.50 16 7 C -0.22 -3.88 5.43 -103.35 -0.56 -4.44 16 8 C 0.59 11.41 7.55 -12.59 -0.10 11.31 16 9 O -0.55 -11.62 15.83 5.25 0.08 -11.54 16 10 N -0.59 -10.79 2.71 -174.33 -0.47 -11.27 16 11 C 0.07 1.31 7.13 59.84 0.43 1.74 16 12 C 0.13 2.22 3.97 -67.12 -0.27 1.96 16 13 C -0.16 -2.76 7.57 -25.92 -0.20 -2.95 16 14 C 0.17 3.17 4.53 -67.12 -0.30 2.87 16 15 N -0.73 -16.38 3.07 -52.64 -0.16 -16.54 16 16 C -0.24 -6.21 10.34 -15.06 -0.16 -6.36 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -27.38 13.97 55.49 0.78 -26.61 16 20 Si 0.86 19.94 23.39 -169.99 -3.98 15.96 16 21 H -0.28 -5.90 6.41 56.52 0.36 -5.53 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.21 6.44 56.52 0.36 -5.85 16 24 C -0.18 -2.94 7.23 -25.92 -0.19 -3.13 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 1.17 6.99 -51.93 -0.36 0.81 16 28 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.17 3.03 2.98 -52.49 -0.16 2.88 16 30 H 0.07 1.43 1.45 -51.93 -0.08 1.36 16 31 H 0.05 0.92 6.59 -51.93 -0.34 0.58 16 32 H 0.09 1.67 5.31 -51.93 -0.28 1.39 16 33 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.36 8.23 4.02 -40.82 -0.16 8.07 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.08 1.51 5.53 -51.93 -0.29 1.22 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -31.43 305.62 -6.35 -37.77 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -5.04 Total: 16.70 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.08 Total: -1.99 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.07 Total: -61.51 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -3.98 Total: 15.96 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.43 -6.35 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999825807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.089 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds